Letter


Nature Chemical Biology 2, 369 - 374 (2006)
Published online: 11 June 2006 | Corrected online: 1 October 0613 | doi:10.1038/nchembio800



There is a Corrigendum (February 2007) associated with this Letter.

There is a Retraction (July 2008) associated with this Letter.

Small molecule–based reversible reprogramming of cellular lifespan

Jaejoon Won1, Mina Kim1,2,5, Nuri Kim1,5, Jin Hee Ahn3, Woo Gil Lee3, Sung Soo Kim3, Ki-Young Chang1, Yong-Weon Yi1 & Tae Kook Kim1,4


Most somatic cells encounter an inevitable destiny, senescence1, 2. Little progress has been made in identifying small molecules that extend the finite lifespan of normal human cells. Here we show that the intrinsic 'senescence clock' can be reset in a reversible manner by selective modulation of the ataxia telangiectasia–mutated (ATM) protein and ATM- and Rad3-related (ATR) protein with a small molecule, CGK733. This compound was identified by a high-throughput phenotypic screen with automated imaging. Employing a magnetic nanoprobe technology, magnetism-based interaction capture (MAGIC)3, we identified ATM as the molecular target of CGK733 from a genome-wide screen. CGK733 inhibits ATM and ATR kinase activities and blocks their checkpoint signaling pathways with great selectivity. Consistently, siRNA-mediated knockdown of ATM and ATR induced the proliferation of senescent cells, although with lesser efficiency than CGK733. These results might reflect the specific targeting of the kinase activities of ATM and ATR by CGK733 without affecting any other domains required for cell proliferation.


Despite increasing understanding of the mechanisms underlying senescence1, 2, 4, 5, 6, there has been little progress in identifying a small molecule capable of extending the normal lifespan of human cells. For pharmacological control of cellular lifespan7, 8, we performed a chemical screening for the modulator of cellular senescence (Fig. 1). A telomeric protein, telomere repeat factor-2 (TRF2), is essential for telomeric t-loop formation, and overexpression of a dominant-negative form of the protein (TRF2DeltaBDeltaM; Fig. 1a) elicits a senescence response9, 10. To exploit the senescence induced by TRF2DeltaBDeltaM for image-based chemical screening, we generated a retrovirus that produces TRF2DeltaBDeltaM together with enhanced green fluorescent protein (EGFP) from an internal ribosome entry site (IRES) for facile monitoring of cells stably expressing TRF2DeltaBDeltaM (Fig. 1a). Retroviral overexpression of TRF2DeltaBDeltaM in primary human BJ fibroblasts established senescence (Supplementary Fig. 1 online).

Figure 1: Identification of a small molecule that reverses senescence.

Figure 1 : Identification of a small molecule that reverses senescence.

(a) Dominant-negative TRF2 expression construct used to elicit cellular senescence. (b) Experimental outline and reference time frame. (c) Live-cell imaging–based high-throughput screen for small molecules that reverse the senescent phenotype elicited by TRF2DeltaBDeltaM. BJ cells were induced to enter into senescence by infection with the retrovirus depicted in a, plated in 96-well plates and treated with the compounds in a chemical library at a concentration of 1 mug ml-1. Live-cell images of EGFP-positive cells were captured by automated fluorescence microscopy at the indicated times. Enlarged views of the images taken 1 d after compound treatment are also shown; cells escaping senescence and cells still in a senescent state are marked with red and yellow arrowheads, respectively. (d,e) Quantitative analysis of the effects of CGK733 on the growth (d) and mean size (e) of cells with TRF2DeltaBDeltaM-induced senescence. (f) Reversible changes in cell morphology and SA–beta-gal expression by CGK733 in cells with TRF2DeltaBDeltaM-induced senescence. In cf, CGK733 was provided at 1 mug ml-1. Scale bars, 200 mum (c,f). (g) Growth response of cells with of TRF2DeltaBDeltaM-induced senescence to various doses of CGK733. The increase in cell number over 6 d after CGK733 treatment is shown as a ratio. Average of three experiments are shown; error bars, s.d. (h) Reversible manipulation of cellular lifespan by CGK733. BJ cells were cultured until replicative senescence and were serially passaged with or without 2 muM CGK733. Red and blue arrowheads indicate the times of addition and withdrawal of CGK733, respectively. The asterisk indicates the PD level at which the cell population was almost completely senescent.

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Cells with TRF2DeltaBDeltaM-induced senescence were dispensed into 96-well plates. After addition of each compound in a library of approx20,000 synthetic organic molecules, phenotypes were monitored by automated fluorescence microscopy for 6 d (Fig. 1b). A small molecule, CGK733 (11; Fig. 2b), conferred robust growth to senescent cells that had ceased proliferation (Fig. 1c,d). Consistently, the average cell size decreased markedly upon treatment with CGK733 (Fig. 1c,e). In addition, senescence-associated beta-galactosidase (SA–beta-gal) activity disappeared in CGK733-treated cells (Fig. 1f). Notably, these senescence-reversal effects were reversible upon removal and readdition of CGK733. These phenotypic alterations were observed in a wide range of CGK733 concentrations (Fig. 1g).

Figure 2: Molecular target identification based on MAGIC technology.

Figure 2 : Molecular target identification based on MAGIC technology.

(a) Schematic of the retroviral vector constructs used to make an expression library. The cDNAs prepared from BJ fibroblasts with TRF2DeltaBDeltaM-induced senescence were fused to the 5' or 3' end of the EGFP gene of pMAGIC-N or pMAGIC-C vector, respectively. The mRFP translated from an IRES served as an internal negative control for magnetic field–directed translocation. (b) Chemical structures of CGK733 and its biotinylated derivative. CGK733-biotin (22) was designed and synthesized on the basis of our studies on the structure-activity relationship of CGK733 (data not shown; see Supplementary Fig. 6 online). CGK733-biotin was used to coat MNP. (c,d) Visual screening based on MAGIC technology. HeLa cells were infected with the retroviral EGFP-fusion protein expression library described in a. These cells were incubated with MNPs coated with CGK733 and TAT-HA2 (2:1 ratio) in the presence of 100 muM chloroquine for 12 h, and then the subcellular localization of EGFP was examined after application (first row), removal (second row) and reapplication (third row) of an external magnetic field ('MF'). To address potential false positives, mRFP, bicistronically coexpressed with EGFP-fusion protein, was simultaneously monitored. Live-cell confocal images were taken with the focal plane at the cellular basal surface ('Bottom') or with the pinhole size increased to collect whole cell images ('Whole'). Arrowheads indicate positive clones. RT-PCR and sequence analysis of mRNAs from these cells identified ATM. Scale bars, 100 mum.

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We speculated on whether CGK733 could counter the replicative senescence. Replicatively senescent BJ cells resumed robust growth upon treatment with CGK733 (Fig. 1h and Supplementary Fig. 2 online). Removal of CGK733 induced the senescent phenotype within a few days, and this was effectively reversed again by subsequent readdition of CGK733. Yet we did not detect any increase in the chromosomal abnormalities in cells that resumed replication by CGK733 (Supplementary Fig. 3 online). Together with the repeated reversibility of the senescent phenotype by CGK733, these results indicate that CGK733-induced senescence reversal is not elicited by chromosomal aberrations. We also observed the senescence-reversal effects of CGK733 with another type of primary human cells, human mammary epithelial cells (HMECs) (Supplementary Fig. 2).

A primary challenge was to identify the molecular target or targets of CGK733 responsible for the phenotypic changes in the senescence process11, 12. We have recently proposed a magnetic nanoprobe technology, MAGIC, as a tool for molecular target identification in living human cells3. For genome-wide screening of molecular target(s) of CGK733 with MAGIC technology, we generated a retroviral EGFP-tagged protein expression library (Fig. 2a), which we stably expressed in HeLa cells by retroviral transduction. We incubated the resulting cells with superparamagnetic nanoparticles (MNPs) coated with CGK733 and the transducible, fusogenic TAT-HA2 peptide. After 12 h of incubation to allow the intracellular uptake and cytosolic release of these nanoprobes, we applied a magnetic field on the basal side of the cells and examined, at the single-cell level, the subcellular localization of proteins expressed from cDNA-EGFP fusions. We identified two positive clones that showed specific translocation of EGFP in the direction of magnetic field, whereas the subcellular localization of mRFP remained unchanged (Fig. 2c,d). RT-PCR and BLAST analysis of mRNAs from these clones identified truncated transcripts of ATM. These two fragments overlap (amino acids 1823–3056 and 2375–3056) and both include the kinase domain, suggesting that CGK733 might act through this domain, as is the case for most kinase inhibitors13.

ATM, along with ATR and DNA-dependent protein kinase (DNA-PK), has important roles in the checkpoint response as a DNA damage sensor and apical kinase that phosphorylates a host of downstream effectors including p53 (refs. 1416). On the basis of structural conservation, ATM belongs to the family of phosphatidylinositol 3-kinase (PI3K)-like kinases (PIKKs). CGK733 exerted inhibitory effects on the kinase activity of ATM in vitro (Fig. 3a, consistent with their physical interactions (Fig. 2). Comparable inhibitory effects were observed with CGK733 in phosphorylation of p53 by ATR (Fig. 3b). CGK733 had a half-maximal inhibitory concentration (IC50) of approx200 nM for ATM and ATR, showing greater potency than LY294002 (IC50, approx5 muM for ATM and ATR), a pan-inhibitor of PI3K and PIKKs (Fig. 3a–c). Under these conditions, CGK733 did not have any substantial effects on DNA-PK (Fig. 3d), although it is a PIKK member structurally related to ATM and ATR. In addition, CGK733 had almost no effect on other kinases that are known to phosphorylate p53 (ref. 16) (Fig. 4a), indicative of a high level of selectivity for ATM and ATR.

Figure 3: Effects of CGK733 on ATM and ATR and related kinase signaling pathways.

Figure 3 : Effects of CGK733 on ATM and ATR and related kinase signaling pathways.

(a–c) Effects of CGK733 and other inhibitors on the kinase activities of ATM and ATR in vitro, using GST-p53 as substrate. The inhibitor concentrations used in a and b are as follows: CGK733 (0.02, 0.2, 2 muM), wortmannin (WN; 5, 10 muM), U0126 (50 muM), SB202190 (50 muM), SB202474 (50 muM) and SB203580 (50 muM). (d) Effects of CGK733 on DNA-PK activity in vitro.

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Figure 4: Effects of CGK733 on kinase signaling pathways related to ATM and ATR.

Figure 4 : Effects of CGK733 on kinase signaling pathways related to ATM and ATR.

(a) Effects of CGK733 on a panel of kinases that can phosphorylate p53. CGK733 concentrations (left to right) were 0, 2, 4, 8, 16 and 32 muM. (b) Effects of CGK733 on activation-associated phosphorylation of ATM and p53 and upregulation of p53 and p21 in cells with TRF2DeltaBDeltaM-induced senescence, as determined by immunoblot analysis. (c,d) Effects of CGK733 on the nuclear focus (NF) and nuclear body (NB) formation associated with TRF2DeltaBDeltaM-induced senescence, as detected by immunostaining with antibodies against phospho-ATM(Ser1981) or phospho-p53(Ser15), respectively. DNA was counterstained with Hoechst 33342. Scale bar, 20 mum. Quantitative data are shown in d; >200 cells were scored. (e) Effects of CGK733 on ATR kinase activities inside cells. After incubation of U2OS cells with 5 muM CGK733 for 4 h, these cells were stimulated with 2 mM hydroxyurea (HU) or 5 mug ml-1 aphidicolin (Aph) for 24 h or 2 h, respectively, and analyzed by immunoblotting. (f) Effects of CGK733 on PI3K activity in vitro, as determined by kinase assays with purified PI3K in the absence or presence of CGK733 or LY294002. (g) Effects of CGK733 on PI3K activity in live cells. BJ cells were transfected with the expression plasmid for PH-EGFP, incubated in a serum-reduced medium (0.5% FBS) for 40 h, and then treated with LY294002 (25 muM) or CGK733 (100 muM) 2 h before stimulation with 20 ng ml-1 PDGF. After stimulation with PDGF, spatial distribution of PH-GFP was monitored by confocal microscopy. Scale bar, 100 mum. (h) Effects of CGK733 on intracellular Akt activation. BJ cells were incubated in a serum-reduced medium (0.5% FBS) for 40 h and then treated with LY294002 or CGK733 (25, 50, and 100 muM) 2 h before stimulation with 20 ng ml-1 PDGF. After stimulation with PDGF for 10 min, the cells were analyzed by immunoblotting. (i) Effects of siRNAs against ATM and ATR on the proliferation of senescent cells. BJ cells with TRF2DeltaBDeltaM-induced senescence were transfected with the siRNAs indicated, and cell numbers and protein levels were determined after 3 d. Averages of three experiments are shown; error bars, s.d. Protein levels of ATM and ATR were quantified and normalized with respect to actin.

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We next assessed whether CGK733 affects the ATM-p53 signaling pathway in cells with TRF2DeltaBDeltaM-induced senescence. These cells showed marked phosphorylation of ATM on Ser1981, along with phosphorylation of Ser15 and stabilization of p53 with a concomitant increase in its downstream effector p21 (Fig. 4b). Notably, all of these markers for stimulation of the ATM-p53 pathway disappeared with CGK733 treatment. Cells with TRF2DeltaBDeltaM-induced senescence showed a punctate distribution of phospho-p53(Ser15) to nuclear bodies, which have been implicated in diverse stress responses17, in addition to phospho-ATM(Ser1981) nuclear foci10 (Fig. 4c). The fraction of cells positive for phospho-ATM(Ser1981) nuclear foci or phospho-p53(Ser15) nuclear bodies greatly increased in the senescent cultures, with most of them containing more than four nuclear foci or nuclear bodies (Fig. 4d). Under these conditions, a marked decrease in the number of cells positive for nuclear foci and nuclear bodies, as well as in the number of nuclear foci and nuclear bodies per cell, was observed after CGK733 treatment (Fig. 4c,d).

The inhibitory effect of CGK733 on intracellular ATM kinase activity was further confirmed by its marked inhibition of ATM's phosphorylation of the kinase Chk2 on Thr68, stimulated by ionizing radiation14, 15, 16 (Supplementary Fig. 4 online). To evaluate the effects of CGK733 on ATR kinase activity inside cells, we examined the phosphorylation of the kinase Chk1 on Ser345, which is known to be directed by ATR, after stimulation of cells with hydroxyurea, aphidicolin or UV light14, 15, 16 (Fig. 4e and Supplementary Fig. 4). CGK733 partially inhibited the phosphorylation of Chk1 that was induced by these stimuli.

Some members of the PIKK family (such as PI3K) are critical for cell growth and survival14, 18, 19. We observed marked adverse effects on cell growth with wortmannin, LY294002 and 2-aminopurine (data not shown), which are known to inhibit all PIKK family members, including ATM, ATR and PI3K. Thus, we further addressed whether the selectivity of CGK733 may account for its astonishing cell growth-promoting activity. CGK733 had a marked selectivity for ATM and ATR over PI3K in vitro (Fig. 4f), although PI3K is highly related structurally to ATM and ATR.

To examine the effects of CGK733 on intracellular PI3K signaling, we transfected BJ cells with the expression plasmid for a fusion of EGFP to the pleckstrin homology (PH) domain of Akt (which binds phosphatidylinositol 3,4,5-triphosphate (PIP3) produced by PI3K), serum starved the cells for 40 h and stimulated them with platelet-derived growth factor (PDGF). Whereas LY294002 strongly suppressed PH-EGFP redistribution to the plasma membrane by PDGF, higher concentrations of CGK733 did not interfere with this movement (Fig. 4g), indicating that CGK733 does not inhibit PI3K.

Phosphorylation of two residues, Thr308 by PDK1 and Ser473 by the mTOR-rictor complex, is critical for activation of Akt, an apical transducer of PI3K activity18, 20. Whereas 25 muM LY294002 suppressed the phosphorylation of Thr308 and Ser473 of Akt almost completely, CGK733 did not change their phosphorylation substantially even at 100 muM (Fig. 4h), indicative of its selectivity for ATM and ATR versus intracellular PI3K, PDK1 and in particular mTOR, another member of the PIKK family.

Several lines of evidence have suggested that the concerted activities of ATM and ATR may be crucial for cellular aging10, 21, 22. Thus, we examined whether separate and combined inhibition of ATM and ATR produce phenotypic consequences in the senescence process that are similar to those of CGK733 (Fig. 4i and Supplementary Fig. 5 online). Notably, siRNA-mediated knockdown of ATR alone did not effectively induce cell division in senescent cells. Under these conditions, ATM siRNA markedly induced the proliferation of senescent cells and ATR siRNA slightly potentiated the effects of ATM siRNA.

Previous studies have shown that the senescence process is dependent on ATM and ATR signaling10, 23 and that the senescence can be bypassed by microinjection of kinase-dead constructs of ATM and ATR24. Yet CGK733-induced effective reversal of senescence, elicited by either continued replication or dominant-negative TRF2, is quite remarkable, as there has been no report of any successful attempts to reverse the established senescence to sustain proliferation for an extended period of time and previous attempts resulted only in the entry of senescent cells into S phase, from which they did not emerge21, 24.

We also observed senescence reversal effects with a recently described ATM inhibitor, KU-55933 (33), which suppresses ATM but not ATR25 (Supplementary Figs. 6 and 7 online). Combined with the data from siRNA experiments (Fig. 4i), these results indicate that ATM might be important in the senescence process, whereas ATR has a supplementary role.

Using a small molecule–based approach implemented with MAGIC technology, our studies revealed the double-edged role of ATM and ATR. Abrogation of the ATM gene, as in individuals with ataxia telangiectasia, leads to accelerated senescence, which is thought to be associated with telomere instability or elevated reactive oxygen species (ROS)-induced DNA damage26, 27. In addition, ATR-null cells are not viable because of the essential role of ATR in S-phase progression28, 29. In marked contrast to those observations, our selective pharmacological blockade of the kinase activities of ATM and ATR produced an opposite outcome—reversal of senescence and lifespan extension. It is conceivable that these results might reflect a unique feature of a small molecule operating as a cellular 'dimmer switch' set by its dosage, in contrast to the simple binary 'on-off switch' nature of genetic inactivation7, 8, 11. By adjusting the concentration of CGK733, elevated kinase activities of ATM and ATR in senescent cells may be fine-tuned to a level below a certain threshold for senescence response24 but sufficient for their basal physiological functions such as telomere maintenance, ROS control and DNA replication fork progression, which are served at low levels of activity of ATM and ATR26, 27, 28, 29. ATM and ATR siRNAs consistently induced the growth of senescent cells at concentrations inducing moderate knockdown of ATM and ATR, whereas they produced deleterious effects at concentrations that reduced ATM and ATR to undetectable levels (Fig. 4i). Notably, only modest inhibition of ATR was detected at the CGK733 concentrations eliciting marked senescence reversal, and growth restimulation effects were compromised at higher concentrations of CGK733 (Figs. 1g and 4e and data not shown). Thus, it is probable that the inhibitory activity of CGK733 on ATM could have a major role in the senescence reversal, and that its activity on ATR might contribute in a more confined concentration range and, if excessive, could produce undesirable collateral effects. In addition, higher senescence-reversal activity of CGK733 as compared with ATM and ATR siRNAs (Supplementary Fig. 5) raises the possibilities that (i) CGK733 might act only on the kinase activities of ATM and ATR and not affect other as-yet-unidentified domains or functions needed for cell survival or (ii) some off-target effects of CGK733 could contribute to its effects on cellular lifespan.

It was previously shown that overexpression of TRF2DeltaBDeltaM causes chromosomal end-to-end fusions and anaphase bridges in tumor cells9. Thus, enforced division of cells with TRF2DeltaBDeltaM-induced senescence by inhibition of the ATM-ATR-p53 DNA damage checkpoint function might impair chromosomal integrity. Our karyotyping analysis shows a slight increase in the chromosomal abnormalities in the TRF2DeltaBDeltaM-expressing cells induced to proliferate by CGK733 (Supplementary Fig. 3). These results indicate that these cells might tolerate a certain degree of chromosomal abnormalities to sustain cell proliferation for extended period of time and/or that some DNA repair mechanism(s) could compensate for the loss of ATM and ATR checkpoint function. In addition, we cannot exclude the possibility that a population of cells that do not have significant chromosomal aberrations could have been selected.

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Methods

Screening for small molecules that reverse cellular senescence.

BJ cells (approxPD37) were induced to enter into senescence by infection with the retrovirus expressing TRF2DeltaBDeltaM together with EGFP, and then plated into 96-well plates. Next, compounds in a selected set of the chemical library were added to the plates at a final concentration of 1 mug ml-1. Live-cell images of EGFP-positive BJ cells were captured at 24-h intervals for 6 d by automated fluorescence microscopy (IN Cell Analyzer 1000 autofocusing microscope, Amersham Biosciences).

Labeling of MNPs.

MNPs were labeled with CGK733 and TAT-HA2 by incubation of streptavidin-conjugated superparamagnetic nanoparticles with CGK733-biotin and biotin–TAT-HA2 (2:1 ratio) at room temperature for 1.5 h. The synthesis of CGK733-biotin is described in the Supplementary Methods online, and that of biotin–TAT-HA2 was described previously3.

EGFP-fusion protein expression library construction.

Poly(A)+ RNAs were purified from BJ cells with TRF2DeltaBDeltaM-induced senescence using a Poly-A-Pure kit (Ambion) according to the manufacturer's instructions. Fusions of cDNAs to the 5' and 3' end of EGFP of pMAGIC-N and pMAGIC-C, respectively, were created essentially as described previously3. The cDNA fragments were inserted into the AscI and NotI sites of pMAGIC-N or pMAGIC-C and the ligated DNAs were transformed into MAX Efficiency DH10B competent cells (Invitrogen).

Target identification based on MAGIC technology.

Cells infected with the retroviral EGFP-fusion protein expression library were grown in a 16-well Lab-Tek chamber slide (Nunc). These cells were washed once with serum-free DMEM and incubated in Opti-MEM (Invitrogen) with MNPs coated with CGK733 and TAT-HA2. Chloroquine was added at 100 muM to further increase the endosomal escape of MNP. After 12 h, the microscope slide was removed from the chamber, sealed with a coverslip and placed upside down (such that the coverslip faces the objective lens) on the stage of a Zeiss LSM 510 Axiovert 100M inverted confocal microscope. A magnetic field was exerted on the cells by placing a permanent magnet (approx1.1 T) onto the microscope slide. Cells showing magnetic field–dependent EGFP translocation were isolated using pipette tips. RNA isolation, RT-PCR, sequence determination and BLAST analysis were done as described previously3.

Kinase assays.

In vitro kinase assays were performed with the purified Flag-tagged ATM, ATR, DNA-PK or other kinases—extracellular signal–regulated kinase (ERK), casein kinase-1 (CK1), cyclin-dependent kinase-2 (CDK2), c-Jun N-terminal kinase (JNK), protein kinase C (PKC), CDK-activating kinase (CAK), checkpoint kinase-1 (Chk1), double-stranded RNA-activated protein kinase (PKR), and p38—using GST-p53 as a substrate in the absence or presence of inhibitors.

Immunofluorescence.

Immunofluorescence analysis was carried out essentially as described previously21. Briefly, the cells grown on chamber slide were washed twice with PBS and fixed with 4% paraformaldehyde in PBS for 20 min. After permeabilization for 20 min with TBS with 0.2% Triton X-100 (TBST), the cells were blocked with 1% BSA in TBS for 1 h and then incubated with antibodies diluted in TBS for 12 h. Samples were washed three times with TBS and then incubated with FITC-labeled secondary antibodies for 1 h. After three washes with TBS, DNA was counterstained with Hoechst 33342. For immunofluorescence assays with the cells with TRF2DeltaBDeltaM-induced senescence, TRF2DeltaBDeltaM was expressed without bicistronic expression of EGFP to prevent cross-talk with the FITC signal from secondary antibodies.

Microscopy.

For high-throughput chemical library screening, fluorescent images were collected using an automated image acquisition system (IN Cell Analyzer 1000 autofocusing microscope, Amersham Biosciences). Cells were excited at 475 nm for EGFP and emission was captured with a BP 510-560 filter. The number and size of cells were quantified with the IN Cell Analyzer object-intensity analysis module (Amersham Biosciences) or LaserPix software (Bio-Rad). Cells stained for SA–beta-gal activity were observed and photographed with an Olympus 1X51 microscope equipped with a UPlanFL times 10, 0.30 Ph1 objective. For MAGIC experiments, confocal laser scanning microscopy was performed on a Zeiss LSM 510 mounted on an Axiovert 100M system equipped with a C-Apochromat times 10, 0.45 W objective. Cells were excited at 488 nm for EGFP and 543 nm for mRFP, and emission was captured using BP 505-530 and LP 560 filters, respectively. For visualization of nuclear foci and nuclear bodies or PH-EGFP trafficking, confocal laser-scanning microscopy was performed on a Zeiss LSM 510 mounted on an Axiovert 200M system equipped with Plan-Neofluar times 20, 0.50-NA and Plan-Apochromat times 100, 1.4-NA oil-immersion objectives. Cells were excited at 488 nm for FITC and EGFP and emission was captured using a BP 500-550 filter. Excitation of Hoechst 33342 dye was performed with a two-photon tunable laser at 780 nm and emission was captured using a BP 390-465 filter.

SA–beta-gal analysis.

Cells were stained for SA–beta-gal activity essentially as described previously30. Briefly, cells were washed with PBS and fixed in 2% formaldehyde/0.2% glutaraldehyde in PBS at room temperature for 5 min. After a wash with PBS, the cells were stained with 1 mg ml-1 X-gal in 40 mM citric acid, Na2HPO4 (pH 6.0), 150 mM NaCl, 2 mM MgCl2, 5 mM K3Fe(CN)6 and 5 mM K4Fe(CN)6 at 37°C for 12 h, and then observed with a phase-contrast microscope.

siRNA.

siRNAs were synthesized as follows: ATM, 5'-AAGCACCAGUCCAGUAUUGGC-3' ATR, 5'-AACCUCCGUGAUGUUGCUUGA-3''. siRNA duplexes were transfected using Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer's instructions.

Note: Supplementary information is available on the Nature Chemical Biology website.

* negative CFI should have been instead a positive CFI - added new CFI, HTML note, and updated PDF

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Acknowledgments

We thank T. de Lange, R.Y. Tsien, J. Campisi, J. Chung, G.P. Nolan, M.R. Stampfer and D.S. Lim for gifts of reagents. This work was supported by CGK Co. Ltd. and was also partially supported by the Korea Research Foundation grant (KRF-2005-C00097), the Korea Health 21 R&D Project (A040042) and the Chemical Genomics program from the Korean Ministry of Science and Technology.

Competing interests statement:

The authors declare  competing financial interests.

Received 1 March 2006; Accepted 15 May 2006; Published online 11 June 2006; Corrected 1 October 0613.

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  1. Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea
  2. CGK Co., Ltd., Daejeon Bioventure Town, Daejeon 305-811, Korea.
  3. Korea Research Institute of Chemical Technology, Daejeon 305-600, Korea.
  4. Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-600, Korea.
  5. These authors contributed equally to this work.

Correspondence to: Tae Kook Kim1,4 e-mail: tkkim@kaist.ac.kr

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