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Article
Nature 445, 387-393 (25 January 2007) | doi:10.1038/nature05455; Received 5 July 2006; Accepted 15 November 2006; Published online 17 January 2007
Coupling substrate and ion binding to extracellular gate of a sodium-dependent aspartate transporter
Olga Boudker1,4,5, Renae M. Ryan1,4,5, Dinesh Yernool1,5, Keiko Shimamoto3 & Eric Gouaux1,2,5
- Department of Biochemistry and Molecular Biophysics, and,
- Howard Hughes Medical Institute, Columbia University, 650 West 168th Street, New York, New York 10032, USA
- Suntory Institute for Bioorganic Research, Wakayamadai, Shimamoto-cho, Misima-gun, Osaka 618-8503, Japan
- These authors contributed equally to this work.
- Present addresses: Department of Physiology and Biophysics, Weill Medical College of Cornell University, 1300 York Avenue, New York, New York 10021, USA (O.B.); National Institute of Neurological Disorders and Stroke, National Institutes of Health, 35 Convent Drive, Bethesda, Maryland 20892, USA (R.M.R.); Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA (D.Y.); Vollum Institute and Howard Hughes Medical Institute, Oregon Health and Science University, Portland, Oregon 97239, USA (E.G.).
Correspondence to: Eric Gouaux1,2,5 Correspondence and requests for materials should be addressed to E.G. (Email: gouauxe@ohsu.edu).
Abstract
Secondary transporters are integral membrane proteins that catalyse the movement of substrate molecules across the lipid bilayer by coupling substrate transport to one or more ion gradients, thereby providing a mechanism for the concentrative uptake of substrates. Here we describe crystallographic and thermodynamic studies of GltPh, a sodium (Na+)-coupled aspartate transporter, defining sites for aspartate, two sodium ions and d,l-threo-
-benzyloxyaspartate, an inhibitor. We further show that helical hairpin 2 is the extracellular gate that controls access of substrate and ions to the internal binding sites. At least two sodium ions bind in close proximity to the substrate and these sodium-binding sites, together with the sodium-binding sites in another sodium-coupled transporter, LeuT, define an unwound
-helix as the central element of the ion-binding motif, a motif well suited to the binding of sodium and to participation in conformational changes that accompany ion binding and unbinding during the transport cycle.
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