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Research | 4 December 2019 | Open
Mitochondrial morphology provides a mechanism for energy buffering at synapses
Scientific Reports 9 , 1–12

Rights & permissionsfor article Mitochondrial morphology provides a mechanism for energy buffering at synapses . Opens in a new window.
Amendments and Corrections | 11 September 2019 | Open
Author Correction: Structural basis for delta cell paracrine regulation in pancreatic islets
- Rafael Arrojo e Drigo
- , Stefan Jacob
- , Concha F. García-Prieto
- , Xiaofeng Zheng
- , Masahiro Fukuda
- , Hoa Tran Thi Nhu
- , Olga Stelmashenko
- , Flavia Letícia Martins Peçanha
- , Rayner Rodriguez-Diaz
- , Eric Bushong
- , Thomas Deerinck
- , Sebastien Phan
- , Yusuf Ali
- , Ingo Leibiger
- , Minni Chua
- , Thomas Boudier
- , Sang-Ho Song
- , Martin Graf
- , George J. Augustine
- , Mark H. Ellisman
- & Per-Olof Berggren
Nature Communications 10 , 1–1

Rights & permissionsfor article Author Correction: Structural basis for delta cell paracrine regulation in pancreatic islets . Opens in a new window.
Research | 16 August 2019 | Open
Structural basis for delta cell paracrine regulation in pancreatic islets
- Rafael Arrojo e Drigo
- , Stefan Jacob
- , Concha F. García-Prieto
- , Xiaofeng Zheng
- , Masahiro Fukuda
- , Hoa Tran Thi Nhu
- , Olga Stelmashenko
- , Flavia Letícia Martins Peçanha
- , Rayner Rodriguez-Diaz
- , Eric Bushong
- , Thomas Deerinck
- , Sebastien Phan
- , Yusuf Ali
- , Ingo Leibiger
- , Minni Chua
- , Thomas Boudier
- , Sang-Ho Song
- , Martin Graf
- , George J. Augustine
- , Mark H. Ellisman
- & Per-Olof Berggren
Nature Communications 10 , 1–12

Rights & permissionsfor article Structural basis for delta cell paracrine regulation in pancreatic islets . Opens in a new window.
Research | 31 August 2018
CDeep3M—Plug-and-Play cloud-based deep learning for image segmentation
- Matthias G. Haberl
- , Christopher Churas
- , Lucas Tindall
- , Daniela Boassa
- , Sébastien Phan
- , Eric A. Bushong
- , Matthew Madany
- , Raffi Akay
- , Thomas J. Deerinck
- , Steven T. Peltier
- & Mark H. Ellisman
Nature Methods 15 , 677–680

Rights & permissionsfor article CDeep3M—Plug-and-Play cloud-based deep learning for image segmentation . Opens in a new window.
Research | 5 April 2019 | Open
Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons
- Ye Zhang
- , Tin Ki Tsang
- , Eric A. Bushong
- , Li-An Chu
- , Ann-Shyn Chiang
- , Mark H. Ellisman
- , Jürgen Reingruber
- & Chih-Ying Su
Nature Communications 10 , 1–16

Rights & permissionsfor article Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons . Opens in a new window.
Research | 18 March 2019 | Open
Adipocyte lipolysis affects Perilipin 5 and cristae organization at the cardiac lipid droplet-mitochondrial interface
Scientific Reports 9 , 1–12

Rights & permissionsfor article Adipocyte lipolysis affects Perilipin 5 and cristae organization at the cardiac lipid droplet-mitochondrial interface . Opens in a new window.
7 October 2014 | Open
A 3D cellular context for the macromolecular world
- Ardan Patwardhan
- , Alun Ashton
- , Robert Brandt
- , Sarah Butcher
- , Raffaella Carzaniga
- , Wah Chiu
- , Lucy Collinson
- , Pascal Doux
- , Elizabeth Duke
- , Mark H Ellisman
- , Erik Franken
- , Kay Grünewald
- , Jean-Karim Heriche
- , Abraham Koster
- , Werner Kühlbrandt
- , Ingvar Lagerstedt
- , Carolyn Larabell
- , Catherine L Lawson
- , Helen R Saibil
- , Eduardo Sanz-García
- , Sriram Subramaniam
- , Paul Verkade
- , Jason R Swedlow
- & Gerard J Kleywegt
Nature Structural & Molecular Biology 21 , 841–845

Rights & permissionsfor article A 3D cellular context for the macromolecular world . Opens in a new window.
Research | 17 February 2005
A FlAsH-based FRET approach to determine G protein–coupled receptor activation in living cells
Nature Methods 2 , 171–176

Rights & permissionsfor article A FlAsH-based FRET approach to determine G protein–coupled receptor activation in living cells . Opens in a new window.
Research | 22 September 2005
Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots
Nature Methods 2 , 743–749

Rights & permissionsfor article Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots . Opens in a new window.
Research | 6 October 2005
STIM1 is a Ca²⁺ sensor that activates CRAC channels and migrates from the Ca²⁺ store to the plasma membrane
Nature 437 , 902–905

Rights & permissionsfor article STIM1 is a Ca2+ sensor that activates CRAC channels and migrates from the Ca2+ store to the plasma membrane . Opens in a new window.
Reviews | 27 April 2004
e-Neuroscience: challenges and triumphs in integrating distributed data from molecules to brains
Nature Neuroscience 7 , 467–472

Rights & permissionsfor article e-Neuroscience: challenges and triumphs in integrating distributed data from molecules to brains . Opens in a new window.
Research | 26 August 2007
Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis
Nature Cell Biology 9 , 1057–1065

Rights & permissionsfor article Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis . Opens in a new window.
Research | 15 October 2018
Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration
- Jae Kyu Ryu
- , Victoria A. Rafalski
- , Anke Meyer-Franke
- , Ryan A. Adams
- , Suresh B. Poda
- , Pamela E. Rios Coronado
- , Lars Østergaard Pedersen
- , Veena Menon
- , Kim M. Baeten
- , Shoana L. Sikorski
- , Catherine Bedard
- , Kristina Hanspers
- , Sophia Bardehle
- , Andrew S. Mendiola
- , Dimitrios Davalos
- , Michael R. Machado
- , Justin P. Chan
- , Ioanna Plastira
- , Mark A. Petersen
- , Samuel J. Pfaff
- , Kenny K. Ang
- , Kenneth K. Hallenbeck
- , Catriona Syme
- , Hiroyuki Hakozaki
- , Mark H. Ellisman
- , Raymond A. Swanson
- , Scott S. Zamvil
- , Michelle R. Arkin
- , Stevin H. Zorn
- , Alexander R. Pico
- , Lennart Mucke
- , Stephen B. Freedman
- , Jeffrey B. Stavenhagen
- , Robert B. Nelson
- & Katerina Akassoglou
Nature Immunology 19 , 1212–1223

Rights & permissionsfor article Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration . Opens in a new window.
Research | 15 May 2018 | Open
Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors
Scientific Reports 8 , 1–11

Rights & permissionsfor article Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors . Opens in a new window.
Research | 19 February 2018 | Open
Elevated intracellular cAMP exacerbates vulnerability to oxidative stress in optic nerve head astrocytes
- Myoung Sup Shim
- , Keun-Young Kim
- , Jung Hyun Bu
- , Hye Seung Nam
- , Seung Won Jeong
- , Tae Lim Park
- , Mark H. Ellisman
- , Robert N. Weinreb
- & Won-Kyu Ju
Cell Death & Disease 9 , 1–18

Rights & permissionsfor article Elevated intracellular cAMP exacerbates vulnerability to oxidative stress in optic nerve head astrocytes . Opens in a new window.
Research | 3 January 2018 | Open
Replication-dependent size reduction precedes differentiation in Chlamydia trachomatis
Nature Communications 9 , 1–9

Rights & permissionsfor article Replication-dependent size reduction precedes differentiation in Chlamydia trachomatis . Opens in a new window.
Protocols | 10 August 2017
Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells
Nature Protocols 12 , 1792–1816

Rights & permissionsfor article Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells . Opens in a new window.
Research | 30 January 2017 | Open
A Rab5 endosomal pathway mediates Parkin-dependent mitochondrial clearance
- Babette C. Hammerling
- , Rita H. Najor
- , Melissa Q. Cortez
- , Sarah E. Shires
- , Leonardo J. Leon
- , Eileen R. Gonzalez
- , Daniela Boassa
- , Sébastien Phan
- , Andrea Thor
- , Rebecca E. Jimenez
- , Hong Li
- , Richard N. Kitsis
- , Gerald W. Dorn II
- , Junichi Sadoshima
- , Mark H. Ellisman
- & Åsa B. Gustafsson
Nature Communications 8 , 1–16

Rights & permissionsfor article A Rab5 endosomal pathway mediates Parkin-dependent mitochondrial clearance . Opens in a new window.
Research | 25 April 2016
Click-EM for imaging metabolically tagged nonprotein biomolecules
Nature Chemical Biology 12 , 459–465

Rights & permissionsfor article Click-EM for imaging metabolically tagged nonprotein biomolecules . Opens in a new window.
Research | 30 May 2016
A split horseradish peroxidase for the detection of intercellular protein–protein interactions and sensitive visualization of synapses
Nature Biotechnology 34 , 774–780

Rights & permissionsfor article A split horseradish peroxidase for the detection of intercellular protein–protein interactions and sensitive visualization of synapses . Opens in a new window.
Research | 29 June 2015
Nuclear pore complex remodeling by p75^NTR cleavage controls TGF-β signaling and astrocyte functions
- Christian Schachtrup
- , Jae Kyu Ryu
- , Könül Mammadzada
- , Abdullah S Khan
- , Peter M Carlton
- , Alex Perez
- , Frank Christian
- , Natacha Le Moan
- , Eirini Vagena
- , Bernat Baeza-Raja
- , Victoria Rafalski
- , Justin P Chan
- , Roland Nitschke
- , Miles D Houslay
- , Mark H Ellisman
- , Tony Wyss-Coray
- , Jorge J Palop
- & Katerina Akassoglou
Nature Neuroscience 18 , 1077–1080

Rights & permissionsfor article Nuclear pore complex remodeling by p75NTR cleavage controls TGF-β signaling and astrocyte functions . Opens in a new window.
Research | 24 November 2014
Directed evolution of APEX2 for electron microscopy and proximity labeling
Nature Methods 12 , 51–54

Rights & permissionsfor article Directed evolution of APEX2 for electron microscopy and proximity labeling . Opens in a new window.
Research | 21 April 2015 | Open
Designer diatom episomes delivered by bacterial conjugation
Nature Communications 6 , 1–10

Rights & permissionsfor article Designer diatom episomes delivered by bacterial conjugation . Opens in a new window.
Research | 28 October 2012
Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy
- Margaret T Butko
- , Jin Yang
- , Yang Geng
- , Hyung Joon Kim
- , Noo Li Jeon
- , Xiaokun Shu
- , Mason R Mackey
- , Mark H Ellisman
- , Roger Y Tsien
- & Michael Z Lin
Nature Neuroscience 15 , 1742–1751

Rights & permissionsfor article Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy . Opens in a new window.
Research | 27 November 2012 | Open
Fibrinogen-induced perivascular microglial clustering is required for the development of axonal damage in neuroinflammation
- Dimitrios Davalos
- , Jae Kyu Ryu
- , Mario Merlini
- , Kim M. Baeten
- , Natacha Le Moan
- , Mark A. Petersen
- , Thomas J. Deerinck
- , Dimitri S. Smirnoff
- , Catherine Bedard
- , Hiroyuki Hakozaki
- , Sara Gonias Murray
- , Jennie B. Ling
- , Hans Lassmann
- , Jay L. Degen
- , Mark H. Ellisman
- & Katerina Akassoglou
Nature Communications 3 , 1–15

Rights & permissionsfor article Fibrinogen-induced perivascular microglial clustering is required for the development of axonal damage in neuroinflammation . Opens in a new window.
Research | 21 October 2012
Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy
- Jeffrey D Martell
- , Thomas J Deerinck
- , Yasemin Sancak
- , Thomas L Poulos
- , Vamsi K Mootha
- , Gina E Sosinsky
- , Mark H Ellisman
- & Alice Y Ting
Nature Biotechnology 30 , 1143–1148

Rights & permissionsfor article Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy . Opens in a new window.
Research | 7 May 2007
Synapse formation on neurons born in the adult hippocampus
- Nicolas Toni
- , E Matthew Teng
- , Eric A Bushong
- , James B Aimone
- , Chunmei Zhao
- , Antonella Consiglio
- , Henriette van Praag
- , Maryann E Martone
- , Mark H Ellisman
- & Fred H Gage
Nature Neuroscience 10 , 727–734

Rights & permissionsfor article Synapse formation on neurons born in the adult hippocampus . Opens in a new window.
Research | 8 February 2004
Activity-dependent regulation of dendritic synthesis and trafficking of AMPA receptors
- William Ju
- , Wade Morishita
- , Jennifer Tsui
- , Guido Gaietta
- , Thomas J Deerinck
- , Stephen R Adams
- , Craig C Garner
- , Roger Y Tsien
- , Mark H Ellisman
- & Robert C Malenka
Nature Neuroscience 7 , 244–253

Rights & permissionsfor article Activity-dependent regulation of dendritic synthesis and trafficking of AMPA receptors . Opens in a new window.
Protocols | 23 September 2010
Fluorescent labeling of tetracysteine-tagged proteins in intact cells
- Carsten Hoffmann
- , Guido Gaietta
- , Alexander Zürn
- , Stephen R Adams
- , Sonia Terrillon
- , Mark H Ellisman
- , Roger Y Tsien
- & Martin J Lohse
Nature Protocols 5 , 1666–1677

Rights & permissionsfor article Fluorescent labeling of tetracysteine-tagged proteins in intact cells . Opens in a new window.

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Mitochondrial morphology provides a mechanism for energy buffering at synapses

Author Correction: Structural basis for delta cell paracrine regulation in pancreatic islets

Structural basis for delta cell paracrine regulation in pancreatic islets

CDeep3M—Plug-and-Play cloud-based deep learning for image segmentation

Asymmetric ephaptic inhibition between compartmentalized olfactory receptor neurons

Adipocyte lipolysis affects Perilipin 5 and cristae organization at the cardiac lipid droplet-mitochondrial interface

A 3D cellular context for the macromolecular world

A FlAsH-based FRET approach to determine G protein–coupled receptor activation in living cells

Correlated light and electron microscopic imaging of multiple endogenous proteins using Quantum dots

STIM1 is a Ca²⁺ sensor that activates CRAC channels and migrates from the Ca²⁺ store to the plasma membrane

e-Neuroscience: challenges and triumphs in integrating distributed data from molecules to brains

Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis

Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration

Iron-specific Signal Separation from within Heavy Metal Stained Biological Samples Using X-Ray Microtomography with Polychromatic Source and Energy-Integrating Detectors

Elevated intracellular cAMP exacerbates vulnerability to oxidative stress in optic nerve head astrocytes

Replication-dependent size reduction precedes differentiation in Chlamydia trachomatis

Electron microscopy using the genetically encoded APEX2 tag in cultured mammalian cells

A Rab5 endosomal pathway mediates Parkin-dependent mitochondrial clearance

Click-EM for imaging metabolically tagged nonprotein biomolecules

A split horseradish peroxidase for the detection of intercellular protein–protein interactions and sensitive visualization of synapses

Nuclear pore complex remodeling by p75^NTR cleavage controls TGF-β signaling and astrocyte functions

Directed evolution of APEX2 for electron microscopy and proximity labeling

Designer diatom episomes delivered by bacterial conjugation

Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy

Fibrinogen-induced perivascular microglial clustering is required for the development of axonal damage in neuroinflammation

Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy

Synapse formation on neurons born in the adult hippocampus

Activity-dependent regulation of dendritic synthesis and trafficking of AMPA receptors

Fluorescent labeling of tetracysteine-tagged proteins in intact cells

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