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Research | 25 November 2019
Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination
- Roby P. Bhattacharyya
- , Nirmalya Bandyopadhyay
- , Peijun Ma
- , Sophie S. Son
- , Jamin Liu
- , Lorrie L. He
- , Lidan Wu
- , Rustem Khafizov
- , Rich Boykin
- , Gustavo C. Cerqueira
- , Alejandro Pironti
- , Robert F. Rudy
- , Milesh M. Patel
- , Rui Yang
- , Jennifer Skerry
- , Elizabeth Nazarian
- , Kimberly A. Musser
- , Jill Taylor
- , Virginia M. Pierce
- , Ashlee M. Earl
- , Lisa A. Cosimi
- , Noam Shoresh
- , Joseph Beechem
- , Jonathan Livny
- & Deborah T. Hung
Nature Medicine 25 , 1858–1864

Rights & permissionsfor article Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination . Opens in a new window.
Research | 2 March 2015
Simultaneous generation of many RNA-seq libraries in a single reaction
- Alexander A Shishkin
- , Georgia Giannoukos
- , Alper Kucukural
- , Dawn Ciulla
- , Michele Busby
- , Christine Surka
- , Jenny Chen
- , Roby P Bhattacharyya
- , Robert F Rudy
- , Milesh M Patel
- , Nathaniel Novod
- , Deborah T Hung
- , Andreas Gnirke
- , Manuel Garber
- , Mitchell Guttman
- & Jonathan Livny
Nature Methods 12 , 323–325

Rights & permissionsfor article Simultaneous generation of many RNA-seq libraries in a single reaction . Opens in a new window.
Research | 14 March 2019 | Open
Rapid identification and phylogenetic classification of diverse bacterial pathogens in a multiplexed hybridization assay targeting ribosomal RNA
- Roby P. Bhattacharyya
- , Mark Walker
- , Rich Boykin
- , Sophie S. Son
- , Jamin Liu
- , Austin C. Hachey
- , Peijun Ma
- , Lidan Wu
- , Kyungyong Choi
- , Kaelyn C. Cummins
- , Maura Benson
- , Jennifer Skerry
- , Hyunryul Ryu
- , Sharon Y. Wong
- , Marcia B. Goldberg
- , Jongyoon Han
- , Virginia M. Pierce
- , Lisa A. Cosimi
- , Noam Shoresh
- , Jonathan Livny
- , Joseph Beechem
- & Deborah T. Hung
Scientific Reports 9 , 1–13

Rights & permissionsfor article Rapid identification and phylogenetic classification of diverse bacterial pathogens in a multiplexed hybridization assay targeting ribosomal RNA . Opens in a new window.
13 May 2011 | Open
Regulation of virulence in Francisella tularensis by small non-coding RNAs
- Guillaume Postic
- , Eric Frapy
- , Marion Dupuis
- , Iharilalao Dubail
- , Jonathan Livny
- , Alain Charbit
- & Karin Meibom
Nature Precedings , 1–1

Rights & permissionsfor article Regulation of virulence in Francisella tularensis by small non-coding RNAs . Opens in a new window.
Research | 28 March 2017 | Open
Depleting Mycobacterium tuberculosis of the transcription termination factor Rho causes pervasive transcription and rapid death
Nature Communications 8 , 1–10

Rights & permissionsfor article Depleting <i>Mycobacterium tuberculosis</i> of the transcription termination factor Rho causes pervasive transcription and rapid death . Opens in a new window.
Protocols | 21 July 2016
A highly multiplexed and sensitive RNA-seq protocol for simultaneous analysis of host and pathogen transcriptomes
- Roi Avraham
- , Nathan Haseley
- , Amy Fan
- , Zohar Bloom-Ackermann
- , Jonathan Livny
- & Deborah T Hung
Nature Protocols 11 , 1477–1491

Rights & permissionsfor article A highly multiplexed and sensitive RNA-seq protocol for simultaneous analysis of host and pathogen transcriptomes . Opens in a new window.
Research | 31 October 2016
A mucosal imprint left by prior Escherichia coli bladder infection sensitizes to recurrent disease
- Valerie P. O'Brien
- , Thomas J. Hannan
- , Lu Yu
- , Jonathan Livny
- , Elisha D. O. Roberson
- , Drew J. Schwartz
- , Spenser Souza
- , Cathy L. Mendelsohn
- , Marco Colonna
- , Amanda L. Lewis
- & Scott J. Hultgren
Nature Microbiology 2 , 1–10

Rights & permissionsfor article A mucosal imprint left by prior <i>Escherichia coli</i> bladder infection sensitizes to recurrent disease . Opens in a new window.

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Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination

Simultaneous generation of many RNA-seq libraries in a single reaction

Rapid identification and phylogenetic classification of diverse bacterial pathogens in a multiplexed hybridization assay targeting ribosomal RNA

Regulation of virulence in Francisella tularensis by small non-coding RNAs

Depleting Mycobacterium tuberculosis of the transcription termination factor Rho causes pervasive transcription and rapid death

A highly multiplexed and sensitive RNA-seq protocol for simultaneous analysis of host and pathogen transcriptomes

A mucosal imprint left by prior Escherichia coli bladder infection sensitizes to recurrent disease

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Simultaneous detection of genotype and phenotype enables rapid and accurate antibiotic susceptibility determination

Simultaneous generation of many RNA-seq libraries in a single reaction

Rapid identification and phylogenetic classification of diverse bacterial pathogens in a multiplexed hybridization assay targeting ribosomal RNA

Regulation of virulence in Francisella tularensis by small non-coding RNAs

Depleting Mycobacterium tuberculosis of the transcription termination factor Rho causes pervasive transcription and rapid death

A highly multiplexed and sensitive RNA-seq protocol for simultaneous analysis of host and pathogen transcriptomes

A mucosal imprint left by prior Escherichia coli bladder infection sensitizes to recurrent disease

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