Population and Quantitative Genetics Topic Room

By: Richard Kliman, Ph.D.  (Cedar Crest College) & Bob Sheehy, Ph.D. (Radford University) © 2008 Nature Education
Citation: Kliman, R. & Sheehy, B. (2008) Introduction to the population and quantitative genetics topic room. Nature Education 1(1)

 

The closely related fields of population genetics and quantitative genetics both focus on the genetic basis of phenotypic variation among the individuals in a population. Population genetics traditionally deals with frequencies of alleles and genotypes, whereas quantitative genetics concentrates on the ways that individual variation in genotype and environment contribute to variance in phenotype. The articles in this topic room represent a blend of both subjects.

The topic room begins with an explanation of Hardy-Weinberg equilibrium, a simple model that predicts unchanging genotype frequencies in a randomly mating, infinitely large population in the absence of selection, migration, or new mutation. A pair of articles by Kent Holsinger then introduces two important analytical approaches (maximum likelihood and Bayesian analysis) as employed in the context of Hardy-Weinberg equilibrium.

Next, Norman Johnson discusses the important debate regarding adaptive landscapes, a concept first proposed by Sewall Wright. A related article explains the concepts of genetic drift and effective population size.

Moving to quantitative genetics, Diane Byers introduces components of phenotypic variance, while Naomi Wray and Peter Visscher explain heritability, which is mathematically defined as the proportion of phenotypic variance attributable to additive genetic variance. (Although a trait may show phenotypic variation among individuals, it must be heritable to respond to artificial or natural selection.) Derek Roff then explains threshold traits, or traits with discrete character states that are better described by quantitative genetics than by simple Mendelian inheritance. After that, Cecelia Miles and Marta Wayne discuss quantitative trait loci in model organisms: what they are, how they are mapped, and why we care.

Finally, Leslie Pray has also contributed three "why we care" articles to this room. In her contributions, Pray describes the relevance of population genetics to conservation (see her article on the bearded vulture), to efforts to better understand human genomic epidemiology (see her article on the HuGE project), and to the use of quantitative trait loci in agriculture (see her article on building a better tomato).



This content is currently under construction.
All Articles Within Population and Quantitative Genetics (17)

Conservation and Ecological Genetics (1)

Introduction to Quantitative Genetics (3)

  • Adaptation and Phenotypic Variance
    Why are the variable levels and patterns of genetic variation important? Knowledge about how traits vary can reveal the evolutionary dynamics that shape populations.
  • Dimorphisms and Threshold Traits
    Threshold traits don’t follow the basic Mendelian rules—they’re influenced by many genes and by the environment. What does this complexity lead to?
  • Estimating Trait Heritability
    Genetic variation in a population can result from a variety of things. What are the ways we can estimate trait heritability?

Quantitative Trait Loci (3)

  • Human Genomic Epidemology: HuGENet
    What should be done to manage the massive amount of data from genomic epidemiology studies? The CDC established HuGENet, the Human Genome Epidemiology Network, to keep track of it all.
  • Quantitative Genetics: Growing Transgenic Tomatoes
    How would you build a "better" tomato? Most likely, you'd select for genes in multiple locations—or quantitative trait loci (QTLs). Knowledge of QTLs is extremely valuable to crop scientists.
  • Quantitative Trait Locus (QTL) Analysis
    What statistical method would you use to analyze complex traits? QTL analysis is particularly helpful, bridging the gap between genes and the phenotypic traits that result from them.

Wright-Fisher Populations (3)

  • Sewall Wright and the Development of Shifting Balance Theory
    How do populations go from one genotype to another genotype if the intermediate phenotypes have lower fitness? The evolutionary forces that explain this make up the shifting balance theory.
  • Genetic Drift and Effective Population Size
    Genetic drift is the reason why we worry about African cheetahs and other species that have small population sizes. Why does it really matter if a species has low or high levels of genetic variation?
  • The EvolGenius Population Genetics Computer Simulation: How it Works
    EvolGenius is a two-locus population genetics simulation written for use in undergraduate courses. Often, we use simulations without really thinking about how they recreate a process. But understanding a simulation — what's really going on behind the scenes on the CPU — allows us to assess what the program is good for, and what it's not. It may allow us to think of ways to do counterintuitive things with a program. In short, it makes the use of a simulation more interesting.
 
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