Oncogenomics

Oncogene (2008) 27, 1019–1032; doi:10.1038/sj.onc.1210712; published online 13 August 2007

A genome-wide study of the repressive effects of estrogen receptor beta on estrogen receptor alpha signaling in breast cancer cells

C Williams1, K Edvardsson1, S A Lewandowski1, A Ström1 and J-Å Gustafsson1

1Department of Biosciences and Nutrition at Novum, Karolinska Institutet, Huddinge, Sweden

Correspondence: C Williams, Department of Biosciences and Nutrition at Novum, Karolinska Institutet, Hälsovägen 7-9, 14157 Huddinge, Sweden. E-mail: cecilia.williams@biosci.ki.se

Received 16 January 2007; Revised 19 June 2007; Accepted 5 July 2007; Published online 13 August 2007.

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Abstract

Transcriptional effects of estrogen result from its activation of two estrogen receptor (ER) isoforms; ERalpha that drives proliferation and ERbeta that is antiproliferative. Expression of ERbeta in xenograft tumors from the T47D breast cancer cell line reduces tumor growth and angiogenesis. If ERbeta can halt tumor growth, its introduction into cancers may be a novel therapeutic approach to the treatment of estrogen-responsive cancers. To assess the complete impact of ERbeta on transcription, we have made a full transcriptome analysis of ERalpha- and ERbeta-mediated gene regulation in T47D cell line with Tet-Off regulated ERbeta expression. Of the 35 000 genes and transcripts analysed, 4.1% (1434) were altered by ERalpha activation. Tet withdrawal and subsequent ERbeta expression inhibited the ERalpha regulation of 998 genes and, in addition, altered expression of 152 non-ERalpha-regulated genes. ERalpha-induced and ERbeta-repressed genes were involved in proliferation, steroid/xenobiotic metabolism and ion transport. The ERbeta repressive effect was further confirmed by proliferation assays, where ERbeta was shown to completely oppose the ERalpha–E2 induced proliferation. Additional analysis of ERbeta with a mutated DNA-binding domain revealed that this mutant, at least for a quantity of genes, antagonizes ERalpha even more strongly than ERbeta wt. From an examination of the genes regulated by ERalpha and ERbeta, we suggest that introduction of ERbeta may be an alternative therapeutic approach to the treatment of certain cancers.

Keywords:

estrogen receptor, microarray, breast cancer, gene regulation

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