Subjects - Genome sequence and analysis

  • Animals

    • The Trichoplax genome and the nature of placozoans

      Nature
      21 August 2008

    • Sequencing one sex or the other has to be justified: Gender genomics and equality

      Heredity
      6 August 2008

    • Alta-Cyclic: a self-optimizing base caller for next-generation sequencing

      Nature Methods
      6 July 2008

    • The amphioxus genome and the evolution of the chordate karyotype

      Nature
      19 June 2008

    • A genome-wide panel of congenic mice reveals widespread epistasis of behavior quantitative trait loci

      Molecular Psychiatry
      1 April 2008

    • Heritability in the genomics era — concepts and misconceptions

      Nature Reviews Genetics
      4 March 2008

  • Arthropods

    • The genome of the model beetle and pest Tribolium castaneum

      Nature
      23 March 2008

    • High-resolution, high-throughput SNP mapping in Drosophila melanogaster

      Nature Methods
      9 March 2008

    • Gene expression: Of ChIPs and flies

      Nature Reviews Genetics
      26 February 2008

  • Bacteria

    • Reconstruction of biochemical networks in microorganisms

      Nature Reviews Microbiology
      31 December 2008

    • e-Science: relieving bottlenecks in large-scale genome analyses

      Nature Reviews Microbiology
      1 December 2008

    • Does my genome look big in this?

      Nature Reviews Microbiology
      1 December 2008

    • Distribution of microbial terpenoid lipid cyclases in the global ocean metagenome

      The ISME Journal
      27 November 2008

    • Genome-scale analyses of health-promoting bacteria: probiogenomics

      Nature Reviews Microbiology
      24 November 2008

    • Environmental microarray analyses of Antarctic soil microbial communities

      The ISME Journal
      20 November 2008

    • Techniques: Hunting WMDs in pathogen genomes

      Nature Reviews Microbiology
      3 November 2008

    • Genomic-scale prioritization of drug targets: the TDR Targets database

      Nature Reviews Drug Discovery
      17 October 2008

    • Functional genomics: An array of bacterial interactions

      Nature Reviews Genetics
      1 September 2008

    • Microbial genomics: Sequencing gets a handle on pathogen variation

      Nature Reviews Genetics
      1 September 2008

    • Post-genomic challenges for collaborative research in infectious diseases

      Nature Reviews Microbiology
      19 August 2008

    • Genomic 'valleys of death'

      Nature Reviews Microbiology
      1 April 2008

    • Symbiosis: Who does what in the microbiome?

      Nature Reviews Microbiology
      10 March 2008

    • Learning how to live together: genomic insights into prokaryote–animal symbioses

      Nature Reviews Genetics
      1 March 2008

    • Technology: Rebuilding a life from scratch

      Nature Reviews Genetics
      1 March 2008

  • Eukaryotes

    • Post-genomic challenges for collaborative research in infectious diseases

      Nature Reviews Microbiology
      19 August 2008

    • Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing

      Nature Methods
      15 June 2008

    • Use and misuse of the gene ontology annotations

      Nature Reviews Genetics
      13 May 2008

    • Learning how to live together: genomic insights into prokaryote–animal symbioses

      Nature Reviews Genetics
      1 March 2008

  • Fungi

    • Reconstruction of biochemical networks in microorganisms

      Nature Reviews Microbiology
      31 December 2008

    • Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

      Nature Biotechnology
      4 May 2008

    • A systematic library for comprehensive overexpression screens in Saccharomyces cerevisiae

      Nature Methods
      3 February 2008

  • Green plants

  • Human

    • Human genomics: Towards an individual view

      Nature Reviews Genetics
      1 December 2008

    • The diploid genome sequence of an Asian individual

      Nature
      6 November 2008

    • DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

      Nature
      6 November 2008

    • Accurate whole human genome sequencing using reversible terminator chemistry

      Nature
      6 November 2008

    • High-resolution statistical mapping reveals gene territories in live yeast

      Nature Methods
      2 November 2008

    • Metabolic syndrome: from epidemiology to systems biology

      Nature Reviews Genetics
      1 November 2008

    • Linking SNPs to CAG repeat length in Huntington's disease patients

      Nature Methods
      19 October 2008

    • Pharmacogenetics in drug discovery and development: a translational perspective

      Nature Reviews Drug Discovery
      19 September 2008

    • The functional repertoires of metazoan genomes

      Nature Reviews Genetics
      1 September 2008

    • Human disease: Chipping away at psychiatric disorders

      Nature Reviews Genetics
      1 September 2008

    • Evolutionary genomics: Our Neanderthal cousins

      Nature Reviews Genetics
      1 September 2008

    • Post-genomic challenges for collaborative research in infectious diseases

      Nature Reviews Microbiology
      19 August 2008

    • Efficient microRNA capture and bar-coding via enzymatic oligonucleotide adenylation

      Nature Methods
      17 August 2008

    • Sequencing one sex or the other has to be justified: Gender genomics and equality

      Heredity
      6 August 2008

    • MAST3: a novel IBD risk factor that modulates TLR4 signaling

      Genes and Immunity
      24 July 2008

    • Alta-Cyclic: a self-optimizing base caller for next-generation sequencing

      Nature Methods
      6 July 2008

    • Mapping the human protein interactome

      Cell Research
      1 July 2008

    • Psychiatric genetics: progress amid controversy

      Nature Reviews Genetics
      1 July 2008

    • The genetics of multiple sclerosis: SNPs to pathways to pathogenesis

      Nature Reviews Genetics
      10 June 2008

    • Human disease: Joining the dots from SNPs to proteins

      Nature Reviews Genetics
      10 June 2008

    • Linkage disequilibrium — understanding the evolutionary past and mapping the medical future

      Nature Reviews Genetics
      1 June 2008

    • Use and misuse of the gene ontology annotations

      Nature Reviews Genetics
      13 May 2008

    • Mapping and sequencing of structural variation from eight human genomes

      Nature
      1 May 2008

    • Genome-wide association studies for complex traits: consensus, uncertainty and challenges

      Nature Reviews Genetics
      1 May 2008

    • The complete genome of an individual by massively parallel DNA sequencing

      Nature
      17 April 2008

    • Genome-wide mapping of allele-specific protein-DNA interactions in human cells

      Nature Methods
      16 March 2008

    • Genome-wide scan revealed genetic loci for energy metabolism in Hispanic children and adolescents

      International Journal of Obesity
      4 March 2008

    • Systematic identification of mammalian regulatory motifs' target genes and functions

      Nature Methods
      2 March 2008

    • Genetics: A numbers game

      Nature Reviews Cancer
      1 March 2008

    • Human disease: Genetic determinants of lipid profiles

      Nature Reviews Genetics
      1 March 2008

    • Human genomics: The finer points of human recombination

      Nature Reviews Genetics
      1 March 2008

    • The road to genome-wide association studies

      Nature Reviews Genetics
      19 February 2008

    • Genome-wide association studies: progress and potential for drug discovery and development

      Nature Reviews Drug Discovery
      1 February 2008

    • Research ethics and the challenge of whole-genome sequencing

      Nature Reviews Genetics
      1 February 2008

    • Epitope tagging of endogenous proteins for genome-wide ChIP-chip studies

      Nature Methods
      6 January 2008

  • Mammals

    • Sequencing the nuclear genome of the extinct woolly mammoth

      Nature
      20 November 2008

    • Leader of the pack: gene mapping in dogs and other model organisms

      Nature Reviews Genetics
      1 September 2008

    • Genome analysis of the platypus reveals unique signatures of evolution

      Nature
      8 May 2008

    • Population genetics: Rich pastures for cattle genomics

      Nature Reviews Genetics
      1 April 2008

    • SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

      Nature Methods
      24 February 2008

  • Metagenomics

    • Metagenomics: Phages apart

      Nature Reviews Microbiology
      10 March 2008

    • Symbiosis: Who does what in the microbiome?

      Nature Reviews Microbiology
      10 March 2008

  • Nematodes

    • Techniques: Hunting WMDs in pathogen genomes

      Nature Reviews Microbiology
      3 November 2008

    • Gene regulation: A tiny missing link for regulatory networks

      Nature Reviews Genetics
      1 November 2008

    • Sequence data swell for nematodes

      Nature Reviews Microbiology
      1 November 2008

    • Genomic-scale prioritization of drug targets: the TDR Targets database

      Nature Reviews Drug Discovery
      17 October 2008

    • The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism

      Nature Genetics
      21 September 2008

    • Caenorhabditis elegans mutant allele identification by whole-genome sequencing

      Nature Methods
      1 August 2008

    • Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

      Nature Biotechnology
      27 July 2008

    • Whole-genome sequencing and variant discovery in C. elegans

      Nature Methods
      20 January 2008

  • Proteobacteria

    • Genomic-scale prioritization of drug targets: the TDR Targets database

      Nature Reviews Drug Discovery
      17 October 2008

  • Rodents

    • Yamanaka factors critically regulate the developmental signaling network in mouse embryonic stem cells

      Cell Research
      1 December 2008

    • Statistical genetics: Fitting phenotypes

      Nature Reviews Genetics
      1 December 2008

    • Metabolic syndrome: from epidemiology to systems biology

      Nature Reviews Genetics
      1 November 2008

    • Trends in large-scale mouse mutagenesis: from genetics to functional genomics

      Nature Reviews Genetics
      1 October 2008

    • Alta-Cyclic: a self-optimizing base caller for next-generation sequencing

      Nature Methods
      6 July 2008

    • Linkage disequilibrium — understanding the evolutionary past and mapping the medical future

      Nature Reviews Genetics
      1 June 2008

    • Use and misuse of the gene ontology annotations

      Nature Reviews Genetics
      13 May 2008

    • Quantitative Trait Locus Analysis Identifies Rat Genomic Regions Related to Amphetamine-Induced Locomotion and Galphai3 Levels in Nucleus Accumbens

      Neuropsychopharmacology
      23 January 2008

  • Viruses

    • Post-genomic challenges for collaborative research in infectious diseases

      Nature Reviews Microbiology
      19 August 2008

    • Metagenomics: Phages apart

      Nature Reviews Microbiology
      10 March 2008

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