Omics http://www.nature.com/omics/current_issue/ Nature Publishing Group en © Nature Publishing Group Omics © Nature Publishing Group permissions@nature.com Omics http://www.nature.com/includes/rj_globnavimages/omics_logo.gif http://www.nature.com/omics/ MicroRNAs: HITS-CLIP hits the microRNA target http://dx.doi.org/10.1038/nrg2635 MicroRNAs: HITS-CLIP hits the microRNA target

Omics. doi:10.1038/nrg2635

Author: Elizabeth Neame

]]> MicroRNAs: HITS-CLIP hits the microRNA target Elizabeth Neame doi:10.1038/nrg2635 Omics 2009-06-30 Omics 2009-06-30 10.1038/nrg2635 http://dx.doi.org/10.1038/nrg2635 The genetics of quantitative traits: challenges and prospects http://dx.doi.org/10.1038/nrg2612 The genetics of quantitative traits: challenges and prospects

Omics. doi:10.1038/nrg2612

Authors: Trudy F. C. Mackay, Eric A. Stone & Julien F. Ayroles

]]> The genetics of quantitative traits: challenges and prospects Trudy F. C. Mackay Eric A. Stone Julien F. Ayroles doi:10.1038/nrg2612 Omics 2009-07-07 Omics 2009-07-07 10.1038/nrg2612 http://dx.doi.org/10.1038/nrg2612 An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors http://dx.doi.org/10.1038/onc.2009.135 An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors

Omics. doi:10.1038/onc.2009.135

Authors: D Chitale, Y Gong, B S Taylor, S Broderick, C Brennan, R Somwar, B Golas, L Wang, N Motoi, J Szoke, J M Reinersman, J Major, C Sander, V E Seshan, M F Zakowski, V Rusch, W Pao, W Gerald & M Ladanyi

]]> An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors D Chitale Y Gong B S Taylor S Broderick C Brennan R Somwar B Golas L Wang N Motoi J Szoke J M Reinersman J Major C Sander V E Seshan M F Zakowski V Rusch W Pao W Gerald M Ladanyi doi:10.1038/onc.2009.135 Omics 2009-06-15 Omics 2009-06-15 10.1038/onc.2009.135 http://dx.doi.org/10.1038/onc.2009.135 Combined genomic and gene expression microarray profiling identifies ECOP as an upregulated gene in squamous cell carcinomas independent of DNA amplification http://dx.doi.org/10.1038/onc.2009.150 Combined genomic and gene expression microarray profiling identifies ECOP as an upregulated gene in squamous cell carcinomas independent of DNA amplification

Omics. doi:10.1038/onc.2009.150

Authors: A Baras, Y Yu, M Filtz, B Kim & C A Moskaluk

]]> Combined genomic and gene expression microarray profiling identifies ECOP as an upregulated gene in squamous cell carcinomas independent of DNA amplification A Baras Y Yu M Filtz B Kim C A Moskaluk doi:10.1038/onc.2009.150 Omics 2009-06-15 Omics 2009-06-15 10.1038/onc.2009.150 http://dx.doi.org/10.1038/onc.2009.150 Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins http://dx.doi.org/10.1038/nbt.1550 Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

Omics667 . doi:10.1038/nbt.1550

Authors: Debashish Ray, Hilal Kazan, Esther T Chan, Lourdes Peña Castillo, Sidharth Chaudhry, Shaheynoor Talukder, Benjamin J Blencowe, Quaid Morris & Timothy R Hughes

]]> Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins Debashish Ray Hilal Kazan Esther T Chan Lourdes Peña Castillo Sidharth Chaudhry Shaheynoor Talukder Benjamin J Blencowe Quaid Morris Timothy R Hughes doi:10.1038/nbt.1550 Omics667 2009-06-28 Omics 2009-06-28 10.1038/nbt.1550 http://dx.doi.org/10.1038/nbt.1550 667 670 Quantification of the yeast transcriptome by single-molecule sequencing http://dx.doi.org/10.1038/nbt.1551 Quantification of the yeast transcriptome by single-molecule sequencing

Omics652 . doi:10.1038/nbt.1551

Authors: Doron Lipson, Tal Raz, Alix Kieu, Daniel R Jones, Eldar Giladi, Edward Thayer, John F Thompson, Stan Letovsky, Patrice Milos & Marie Causey

]]> Quantification of the yeast transcriptome by single-molecule sequencing Doron Lipson Tal Raz Alix Kieu Daniel R Jones Eldar Giladi Edward Thayer John F Thompson Stan Letovsky Patrice Milos Marie Causey doi:10.1038/nbt.1551 Omics652 2009-07-05 Omics 2009-07-05 10.1038/nbt.1551 http://dx.doi.org/10.1038/nbt.1551 652 658 Synergistic drug combinations tend to improve therapeutically relevant selectivity http://dx.doi.org/10.1038/nbt.1549 Synergistic drug combinations tend to improve therapeutically relevant selectivity

Omics659 . doi:10.1038/nbt.1549

Authors: Joseph Lehár, Andrew S Krueger, William Avery, Adrian M Heilbut, Lisa M Johansen, E Roydon Price, Richard J Rickles, Glenn F Short III, Jane E Staunton, Xiaowei Jin, Margaret S Lee, Grant R Zimmermann & Alexis A Borisy

]]> Synergistic drug combinations tend to improve therapeutically relevant selectivity Joseph Lehár Andrew S Krueger William Avery Adrian M Heilbut Lisa M Johansen E Roydon Price Richard J Rickles Glenn F Short III Jane E Staunton Xiaowei Jin Margaret S Lee Grant R Zimmermann Alexis A Borisy doi:10.1038/nbt.1549 Omics659 2009-07-05 Omics 2009-07-05 10.1038/nbt.1549 http://dx.doi.org/10.1038/nbt.1549 659 666 Mina, an Il4 repressor, controls T helper type 2 bias http://dx.doi.org/10.1038/ni.1747 Mina, an Il4 repressor, controls T helper type 2 bias

Omics. doi:10.1038/ni.1747

Authors: Mariko Okamoto, Melanie Van Stry, Linda Chung, Madoka Koyanagi, Xizhang Sun, Yoshie Suzuki, Osamu Ohara, Hiroshi Kitamura, Atsushi Hijikata, Masato Kubo & Mark Bix

]]> Mina, an Il4 repressor, controls T helper type 2 bias Mariko Okamoto Melanie Van Stry Linda Chung Madoka Koyanagi Xizhang Sun Yoshie Suzuki Osamu Ohara Hiroshi Kitamura Atsushi Hijikata Masato Kubo Mark Bix doi:10.1038/ni.1747 Omics 2009-06-28 Omics 2009-06-28 10.1038/ni.1747 http://dx.doi.org/10.1038/ni.1747 A highly annotated whole-genome sequence of a Korean individual http://dx.doi.org/10.1038/nature08211 A highly annotated whole-genome sequence of a Korean individual

Omics. doi:10.1038/nature08211

Authors: Jong-Il Kim, Young Seok Ju, Hansoo Park, Sheehyun Kim, Seonwook Lee, Jae-Hyuk Yi, Joann Mudge, Neil A. Miller, Dongwan Hong, Callum J. Bell, Hye-Sun Kim, In-Soon Chung, Woo-Chung Lee, Ji-Sun Lee, Seung-Hyun Seo, Ji-Young Yun, Hyun Nyun Woo, Heewook Lee, Dongwhan Suh, Seungbok Lee, Hyun-Jin Kim, Maryam Yavartanoo, Minhye Kwak, Ying Zheng, Mi Kyeong Lee, Hyunjun Park, Jeong Yeon Kim, Omer Gokcumen, Ryan E. Mills, Alexander Wait Zaranek, Joseph Thakuria, Xiaodi Wu, Ryan W. Kim, Jim J. Huntley, Shujun Luo, Gary P. Schroth, Thomas D. Wu, HyeRan Kim, Kap-Seok Yang, Woong-Yang Park, Hyungtae Kim, George M. Church, Charles Lee, Stephen F. Kingsmore & Jeong-Sun Seo

]]> A highly annotated whole-genome sequence of a Korean individual Jong-Il Kim Young Seok Ju Hansoo Park Sheehyun Kim Seonwook Lee Jae-Hyuk Yi Joann Mudge Neil A. Miller Dongwan Hong Callum J. Bell Hye-Sun Kim In-Soon Chung Woo-Chung Lee Ji-Sun Lee Seung-Hyun Seo Ji-Young Yun Hyun Nyun Woo Heewook Lee Dongwhan Suh Seungbok Lee Hyun-Jin Kim Maryam Yavartanoo Minhye Kwak Ying Zheng Mi Kyeong Lee Hyunjun Park Jeong Yeon Kim Omer Gokcumen Ryan E. Mills Alexander Wait Zaranek Joseph Thakuria Xiaodi Wu Ryan W. Kim Jim J. Huntley Shujun Luo Gary P. Schroth Thomas D. Wu HyeRan Kim Kap-Seok Yang Woong-Yang Park Hyungtae Kim George M. Church Charles Lee Stephen F. Kingsmore Jeong-Sun Seo doi:10.1038/nature08211 Omics 2009-07-08 Omics 2009-07-08 10.1038/nature08211 http://dx.doi.org/10.1038/nature08211 Reconstruction of biochemical networks in microorganisms http://dx.doi.org/10.1038/nrmicro1949 Reconstruction of biochemical networks in microorganisms

Omics129 . doi:10.1038/nrmicro1949

Authors: Adam M. Feist, Markus J. Herrgård, Ines Thiele, Jennie L. Reed & Bernhard Ø. Palsson

]]> Reconstruction of biochemical networks in microorganisms Adam M. Feist Markus J. Herrgård Ines Thiele Jennie L. Reed Bernhard Ø. Palsson doi:10.1038/nrmicro1949 Omics129 2008-12-31 Omics 2008-12-31 10.1038/nrmicro1949 http://dx.doi.org/10.1038/nrmicro1949 129 143 Prostate cancer genomics: towards a new understanding http://dx.doi.org/10.1038/nrg2507 Prostate cancer genomics: towards a new understanding

Omics77 . doi:10.1038/nrg2507

Author: John S. Witte

]]> Prostate cancer genomics: towards a new understanding John S. Witte doi:10.1038/nrg2507 Omics77 Omics 10.1038/nrg2507 http://dx.doi.org/10.1038/nrg2507 77 82 PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls http://dx.doi.org/10.1038/nbt.1518 PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

Omics66 . doi:10.1038/nbt.1518

Authors: Joel Rozowsky, Ghia Euskirchen, Raymond K Auerbach, Zhengdong D Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder & Mark B Gerstein

]]> PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls Joel Rozowsky Ghia Euskirchen Raymond K Auerbach Zhengdong D Zhang Theodore Gibson Robert Bjornson Nicholas Carriero Michael Snyder Mark B Gerstein doi:10.1038/nbt.1518 Omics66 2009-01-04 Omics 2009-01-04 10.1038/nbt.1518 http://dx.doi.org/10.1038/nbt.1518 66 75 Yamanaka factors critically regulate the developmental signaling network in mouse embryonic stem cells http://dx.doi.org/10.1038/cr.2008.309 Yamanaka factors critically regulate the developmental signaling network in mouse embryonic stem cells

Omics1177 . doi:10.1038/cr.2008.309

Authors: Xiaosong Liu, Jinyan Huang, Taotao Chen, Ying Wang, Shunmei Xin, Jian Li, Gang Pei & Jiuhong Kang

]]> Yamanaka factors critically regulate the developmental signaling network in mouse embryonic stem cells Xiaosong Liu Jinyan Huang Taotao Chen Ying Wang Shunmei Xin Jian Li Gang Pei Jiuhong Kang doi:10.1038/cr.2008.309 Omics1177 Omics 10.1038/cr.2008.309 http://dx.doi.org/10.1038/cr.2008.309 1177 1189 Normal tissue reactions to radiotherapy: towards tailoring treatment dose by genotype http://dx.doi.org/10.1038/nrc2587 Normal tissue reactions to radiotherapy: towards tailoring treatment dose by genotype

Omics134 . doi:10.1038/nrc2587

Authors: Gillian C. Barnett, Catherine M. L. West, Alison M. Dunning, Rebecca M. Elliott, Charlotte E. Coles, Paul D. P. Pharoah & Neil G. Burnet

]]> Normal tissue reactions to radiotherapy: towards tailoring treatment dose by genotype Gillian C. Barnett Catherine M. L. West Alison M. Dunning Rebecca M. Elliott Charlotte E. Coles Paul D. P. Pharoah Neil G. Burnet doi:10.1038/nrc2587 Omics134 2009-01-16 Omics 2009-01-16 10.1038/nrc2587 http://dx.doi.org/10.1038/nrc2587 134 142 Alternative splicing: Deciding between the alternatives http://dx.doi.org/10.1038/nrg2532 Alternative splicing: Deciding between the alternatives

Omics71 . doi:10.1038/nrg2532

Author: Meera Swami

]]> Alternative splicing: Deciding between the alternatives Meera Swami doi:10.1038/nrg2532 Omics71 Omics 10.1038/nrg2532 http://dx.doi.org/10.1038/nrg2532 71 71 Dynamic modularity in protein interaction networks predicts breast cancer outcome http://dx.doi.org/10.1038/nbt.1522 Dynamic modularity in protein interaction networks predicts breast cancer outcome

Omics199 . doi:10.1038/nbt.1522

Authors: Ian W Taylor, Rune Linding, David Warde-Farley, Yongmei Liu, Catia Pesquita, Daniel Faria, Shelley Bull, Tony Pawson, Quaid Morris & Jeffrey L Wrana

]]> Dynamic modularity in protein interaction networks predicts breast cancer outcome Ian W Taylor Rune Linding David Warde-Farley Yongmei Liu Catia Pesquita Daniel Faria Shelley Bull Tony Pawson Quaid Morris Jeffrey L Wrana doi:10.1038/nbt.1522 Omics199 2009-02-01 Omics 2009-02-01 10.1038/nbt.1522 http://dx.doi.org/10.1038/nbt.1522 199 204 Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing http://dx.doi.org/10.1038/nbt.1523 Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

Omics182 . doi:10.1038/nbt.1523

Authors: Andreas Gnirke, Alexandre Melnikov, Jared Maguire, Peter Rogov, Emily M LeProust, William Brockman, Timothy Fennell, Georgia Giannoukos, Sheila Fisher, Carsten Russ, Stacey Gabriel, David B Jaffe, Eric S Lander & Chad Nusbaum

]]> Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing Andreas Gnirke Alexandre Melnikov Jared Maguire Peter Rogov Emily M LeProust William Brockman Timothy Fennell Georgia Giannoukos Sheila Fisher Carsten Russ Stacey Gabriel David B Jaffe Eric S Lander Chad Nusbaum doi:10.1038/nbt.1523 Omics182 2009-02-01 Omics 2009-02-01 10.1038/nbt.1523 http://dx.doi.org/10.1038/nbt.1523 182 189 Prediction of high-responding peptides for targeted protein assays by mass spectrometry http://dx.doi.org/10.1038/nbt.1524 Prediction of high-responding peptides for targeted protein assays by mass spectrometry

Omics190 . doi:10.1038/nbt.1524

Authors: Vincent A Fusaro, D R Mani, Jill P Mesirov & Steven A Carr

]]> Prediction of high-responding peptides for targeted protein assays by mass spectrometry Vincent A Fusaro D R Mani Jill P Mesirov Steven A Carr doi:10.1038/nbt.1524 Omics190 2009-01-25 Omics 2009-01-25 10.1038/nbt.1524 http://dx.doi.org/10.1038/nbt.1524 190 198 Proteasome Subunits mRNA Expressions Correlate With Male BMI: Implications for a Role in Obesity http://dx.doi.org/10.1038/oby.2008.612 Proteasome Subunits mRNA Expressions Correlate With Male BMI: Implications for a Role in Obesity

Omics1044 . doi:10.1038/oby.2008.612

Authors: Kozue Sakamoto, Youichi Sato, Toshikatsu Shinka, Masako Sei, Isoko Nomura, Mayumi Umeno, Ashraf A. Ewis & Yutaka Nakahori

]]> Proteasome Subunits mRNA Expressions Correlate With Male BMI: Implications for a Role in Obesity Kozue Sakamoto Youichi Sato Toshikatsu Shinka Masako Sei Isoko Nomura Mayumi Umeno Ashraf A. Ewis Yutaka Nakahori doi:10.1038/oby.2008.612 Omics1044 2009-01-22 Omics 2009-01-22 10.1038/oby.2008.612 http://dx.doi.org/10.1038/oby.2008.612 1044 1049 Cancer: Identifying drug–genotype interactions http://dx.doi.org/10.1038/nrd2808 Cancer: Identifying drug–genotype interactions

Omics109 . doi:10.1038/nrd2808

Author: Charlotte Harrison

]]> Cancer: Identifying drug–genotype interactions Charlotte Harrison doi:10.1038/nrd2808 Omics109 Omics 10.1038/nrd2808 http://dx.doi.org/10.1038/nrd2808 109 109 Reconstruction of biochemical networks in microorganisms http://dx.doi.org/10.1038/nrmicro1949 Reconstruction of biochemical networks in microorganisms

Omics129 . doi:10.1038/nrmicro1949

Authors: Adam M. Feist, Markus J. Herrgård, Ines Thiele, Jennie L. Reed & Bernhard Ø. Palsson

]]> Reconstruction of biochemical networks in microorganisms Adam M. Feist Markus J. Herrgård Ines Thiele Jennie L. Reed Bernhard Ø. Palsson doi:10.1038/nrmicro1949 Omics129 2008-12-31 Omics 2008-12-31 10.1038/nrmicro1949 http://dx.doi.org/10.1038/nrmicro1949 129 143 Host genetics: Opening the door to TB http://dx.doi.org/10.1038/nrmicro2081 Host genetics: Opening the door to TB

Omics94 . doi:10.1038/nrmicro2081

Author: Gillian Young

]]> Host genetics: Opening the door to TB Gillian Young doi:10.1038/nrmicro2081 Omics94 Omics 10.1038/nrmicro2081 http://dx.doi.org/10.1038/nrmicro2081 94 95 p53 polymorphisms: cancer implications http://dx.doi.org/10.1038/nrc2584 p53 polymorphisms: cancer implications

Omics95 . doi:10.1038/nrc2584

Authors: Catherine Whibley, Paul D. P. Pharoah & Monica Hollstein

]]> p53 polymorphisms: cancer implications Catherine Whibley Paul D. P. Pharoah Monica Hollstein doi:10.1038/nrc2584 Omics95 Omics 10.1038/nrc2584 http://dx.doi.org/10.1038/nrc2584 95 107 Technology: Indirect activation http://dx.doi.org/10.1038/nrc2592 Technology: Indirect activation

Omics75 . doi:10.1038/nrc2592

Author: Meera Swami

]]> Technology: Indirect activation Meera Swami doi:10.1038/nrc2592 Omics75 2009-01-16 Omics 2009-01-16 10.1038/nrc2592 http://dx.doi.org/10.1038/nrc2592 75 75 Chromatin: Completing the picture http://dx.doi.org/10.1038/nrg2542 Chromatin: Completing the picture

Omics151 . doi:10.1038/nrg2542

Author: Meera Swami

]]> Chromatin: Completing the picture Meera Swami doi:10.1038/nrg2542 Omics151 Omics 10.1038/nrg2542 http://dx.doi.org/10.1038/nrg2542 151 151 Disease genetics: The importance of networking http://dx.doi.org/10.1038/nrg2543 Disease genetics: The importance of networking

Omics152 . doi:10.1038/nrg2543

Author: Chris Gunter

]]> Disease genetics: The importance of networking Chris Gunter doi:10.1038/nrg2543 Omics152 Omics 10.1038/nrg2543 http://dx.doi.org/10.1038/nrg2543 152 153 The role of predictive modelling in rationally re-engineering biological systems http://dx.doi.org/10.1038/nrmicro2107 The role of predictive modelling in rationally re-engineering biological systems

Omics297 . doi:10.1038/nrmicro2107

Authors: Tie Koide, Wyming Lee Pang & Nitin S. Baliga

]]> The role of predictive modelling in rationally re-engineering biological systems Tie Koide Wyming Lee Pang Nitin S. Baliga doi:10.1038/nrmicro2107 Omics297 2009-03-02 Omics 2009-03-02 10.1038/nrmicro2107 http://dx.doi.org/10.1038/nrmicro2107 297 305 Application of 'next-generation' sequencing technologies to microbial genetics http://dx.doi.org/10.1038/nrmicro2088 Application of 'next-generation' sequencing technologies to microbial genetics

Omics287 . doi:10.1038/nrmicro2088

Authors: Daniel MacLean, Jonathan D. G. Jones & David J. Studholme

]]> Application of 'next-generation' sequencing technologies to microbial genetics Daniel MacLean Jonathan D. G. Jones David J. Studholme doi:10.1038/nrmicro2088 Omics287 2009-02-23 Omics 2009-02-23 10.1038/nrmicro2088 http://dx.doi.org/10.1038/nrmicro2088 287 296 Beyond odds ratios — communicating disease risk based on genetic profiles http://dx.doi.org/10.1038/nrg2516 Beyond odds ratios — communicating disease risk based on genetic profiles

Omics264 . doi:10.1038/nrg2516

Authors: Peter Kraft, Sholom Wacholder, Marilyn C. Cornelis, Frank B. Hu, Richard B. Hayes, Gilles Thomas, Robert Hoover, David J. Hunter & Stephen Chanock

]]> Beyond odds ratios — communicating disease risk based on genetic profiles Peter Kraft Sholom Wacholder Marilyn C. Cornelis Frank B. Hu Richard B. Hayes Gilles Thomas Robert Hoover David J. Hunter Stephen Chanock doi:10.1038/nrg2516 Omics264 Omics 10.1038/nrg2516 http://dx.doi.org/10.1038/nrg2516 264 269 New insights into the genetics of addiction http://dx.doi.org/10.1038/nrg2536 New insights into the genetics of addiction

Omics225 . doi:10.1038/nrg2536

Authors: Ming D. Li & Margit Burmeister

]]> New insights into the genetics of addiction Ming D. Li Margit Burmeister doi:10.1038/nrg2536 Omics225 Omics 10.1038/nrg2536 http://dx.doi.org/10.1038/nrg2536 225 231 Translation: Ribosomal footprints http://dx.doi.org/10.1038/nrg2557 Translation: Ribosomal footprints

Omics222 . doi:10.1038/nrg2557

Author: Elizabeth Neame

]]> Translation: Ribosomal footprints Elizabeth Neame doi:10.1038/nrg2557 Omics222 Omics 10.1038/nrg2557 http://dx.doi.org/10.1038/nrg2557 222 222 Systems genetics: Networking complex traits http://dx.doi.org/10.1038/nrg2566 Systems genetics: Networking complex traits

Omics219 . doi:10.1038/nrg2566

Author: Meera Swami

]]> Systems genetics: Networking complex traits Meera Swami doi:10.1038/nrg2566 Omics219 Omics 10.1038/nrg2566 http://dx.doi.org/10.1038/nrg2566 219 219 Population genetics: A portrait of yeast http://dx.doi.org/10.1038/nrg2561 Population genetics: A portrait of yeast

Omics222 . doi:10.1038/nrg2561

Author: Tanita Casci

]]> Population genetics: A portrait of yeast Tanita Casci doi:10.1038/nrg2561 Omics222 Omics 10.1038/nrg2561 http://dx.doi.org/10.1038/nrg2561 222 223 The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules http://dx.doi.org/10.1038/ni.1699 The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules

Omics281 . doi:10.1038/ni.1699

Authors: Shengli Hao & David Baltimore

]]> The stability of mRNA influences the temporal order of the induction of genes encoding inflammatory molecules Shengli Hao David Baltimore doi:10.1038/ni.1699 Omics281 2009-02-08 Omics 2009-02-08 10.1038/ni.1699 http://dx.doi.org/10.1038/ni.1699 281 288 A network view of disease and compound screening http://dx.doi.org/10.1038/nrd2826 A network view of disease and compound screening

Omics286 . doi:10.1038/nrd2826

Authors: Eric E. Schadt, Stephen H. Friend & David A. Shaywitz

]]> A network view of disease and compound screening Eric E. Schadt Stephen H. Friend David A. Shaywitz doi:10.1038/nrd2826 Omics286 Omics 10.1038/nrd2826 http://dx.doi.org/10.1038/nrd2826 286 295 The role of predictive modelling in rationally re-engineering biological systems http://dx.doi.org/10.1038/nrmicro2107 The role of predictive modelling in rationally re-engineering biological systems

Omics297 . doi:10.1038/nrmicro2107

Authors: Tie Koide, Wyming Lee Pang & Nitin S. Baliga

]]> The role of predictive modelling in rationally re-engineering biological systems Tie Koide Wyming Lee Pang Nitin S. Baliga doi:10.1038/nrmicro2107 Omics297 2009-03-02 Omics 2009-03-02 10.1038/nrmicro2107 http://dx.doi.org/10.1038/nrmicro2107 297 305 Application of 'next-generation' sequencing technologies to microbial genetics http://dx.doi.org/10.1038/nrmicro2088 Application of 'next-generation' sequencing technologies to microbial genetics

Omics287 . doi:10.1038/nrmicro2088

Authors: Daniel MacLean, Jonathan D. G. Jones & David J. Studholme

]]> Application of 'next-generation' sequencing technologies to microbial genetics Daniel MacLean Jonathan D. G. Jones David J. Studholme doi:10.1038/nrmicro2088 Omics287 2009-02-23 Omics 2009-02-23 10.1038/nrmicro2088 http://dx.doi.org/10.1038/nrmicro2088 287 296 Genetic susceptibility to SLE: new insights from fine mapping and genome-wide association studies http://dx.doi.org/10.1038/nrg2571 Genetic susceptibility to SLE: new insights from fine mapping and genome-wide association studies

Omics285 . doi:10.1038/nrg2571

Authors: Isaac T. W. Harley, Kenneth M. Kaufman, Carl D. Langefeld, John B. Harley & Jennifer A. Kelly

]]> Genetic susceptibility to SLE: new insights from fine mapping and genome-wide association studies Isaac T. W. Harley Kenneth M. Kaufman Carl D. Langefeld John B. Harley Jennifer A. Kelly doi:10.1038/nrg2571 Omics285 Omics 10.1038/nrg2571 http://dx.doi.org/10.1038/nrg2571 285 290 Functional genomics: Structure provides clues http://dx.doi.org/10.1038/nrg2576 Functional genomics: Structure provides clues

Omics284 . doi:10.1038/nrg2576

Author: Meera Swami

]]> Functional genomics: Structure provides clues Meera Swami doi:10.1038/nrg2576 Omics284 Omics 10.1038/nrg2576 http://dx.doi.org/10.1038/nrg2576 284 284 Beyond odds ratios — communicating disease risk based on genetic profiles http://dx.doi.org/10.1038/nrg2516 Beyond odds ratios — communicating disease risk based on genetic profiles

Omics264 . doi:10.1038/nrg2516

Authors: Peter Kraft, Sholom Wacholder, Marilyn C. Cornelis, Frank B. Hu, Richard B. Hayes, Gilles Thomas, Robert Hoover, David J. Hunter & Stephen Chanock

]]> Beyond odds ratios — communicating disease risk based on genetic profiles Peter Kraft Sholom Wacholder Marilyn C. Cornelis Frank B. Hu Richard B. Hayes Gilles Thomas Robert Hoover David J. Hunter Stephen Chanock doi:10.1038/nrg2516 Omics264 Omics 10.1038/nrg2516 http://dx.doi.org/10.1038/nrg2516 264 269 New insights into the genetics of addiction http://dx.doi.org/10.1038/nrg2536 New insights into the genetics of addiction

Omics225 . doi:10.1038/nrg2536

Authors: Ming D. Li & Margit Burmeister

]]> New insights into the genetics of addiction Ming D. Li Margit Burmeister doi:10.1038/nrg2536 Omics225 Omics 10.1038/nrg2536 http://dx.doi.org/10.1038/nrg2536 225 231 Human genetic variation and its contribution to complex traits http://dx.doi.org/10.1038/nrg2554 Human genetic variation and its contribution to complex traits

Omics241 . doi:10.1038/nrg2554

Authors: Kelly A. Frazer, Sarah S. Murray, Nicholas J. Schork & Eric J. Topol

]]> Human genetic variation and its contribution to complex traits Kelly A. Frazer Sarah S. Murray Nicholas J. Schork Eric J. Topol doi:10.1038/nrg2554 Omics241 Omics 10.1038/nrg2554 http://dx.doi.org/10.1038/nrg2554 241 251 Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells http://dx.doi.org/10.1038/nbt.1533 Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

Omics361 . doi:10.1038/nbt.1533

Authors: Madeleine P Ball, Jin Billy Li, Yuan Gao, Je-Hyuk Lee, Emily M LeProust, In-Hyun Park, Bin Xie, George Q Daley & George M Church

]]> Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells Madeleine P Ball Jin Billy Li Yuan Gao Je-Hyuk Lee Emily M LeProust In-Hyun Park Bin Xie George Q Daley George M Church doi:10.1038/nbt.1533 Omics361 2009-03-29 Omics 2009-03-29 10.1038/nbt.1533 http://dx.doi.org/10.1038/nbt.1533 361 368 Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming http://dx.doi.org/10.1038/nbt.1530 Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming

Omics353 . doi:10.1038/nbt.1530

Authors: Jie Deng, Robert Shoemaker, Bin Xie, Athurva Gore, Emily M LeProust, Jessica Antosiewicz-Bourget, Dieter Egli, Nimet Maherali, In-Hyun Park, Junying Yu, George Q Daley, Kevin Eggan, Konrad Hochedlinger, James Thomson, Wei Wang, Yuan Gao & Kun Zhang

]]> Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming Jie Deng Robert Shoemaker Bin Xie Athurva Gore Emily M LeProust Jessica Antosiewicz-Bourget Dieter Egli Nimet Maherali In-Hyun Park Junying Yu George Q Daley Kevin Eggan Konrad Hochedlinger James Thomson Wei Wang Yuan Gao Kun Zhang doi:10.1038/nbt.1530 Omics353 2009-03-29 Omics 2009-03-29 10.1038/nbt.1530 http://dx.doi.org/10.1038/nbt.1530 353 360 Personal genomics services: whose genomes? http://dx.doi.org/10.1038/ejhg.2008.254 Personal genomics services: whose genomes?

Omics883 . doi:10.1038/ejhg.2008.254

Authors: David Gurwitz & Yael Bregman-Eschet

]]> Personal genomics services: whose genomes? David Gurwitz Yael Bregman-Eschet doi:10.1038/ejhg.2008.254 Omics883 2009-03-04 Omics 2009-03-04 10.1038/ejhg.2008.254 http://dx.doi.org/10.1038/ejhg.2008.254 883 889 Integrative genomics, personal-genome tests and personalized healthcare: the future is being built today http://dx.doi.org/10.1038/ejhg.2009.32 Integrative genomics, personal-genome tests and personalized healthcare: the future is being built today

Omics. doi:10.1038/ejhg.2009.32

Author: Angela Brand

]]> Integrative genomics, personal-genome tests and personalized healthcare: the future is being built today Angela Brand doi:10.1038/ejhg.2009.32 Omics 2009-03-04 Omics 2009-03-04 10.1038/ejhg.2009.32 http://dx.doi.org/10.1038/ejhg.2009.32 Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins http://dx.doi.org/10.1038/nbt.1532 Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

Omics378 . doi:10.1038/nbt.1532

Authors: Bernd Wollscheid, Damaris Bausch-Fluck, Christine Henderson, Robert O'Brien, Miriam Bibel, Ralph Schiess, Ruedi Aebersold & Julian D Watts

]]> Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins Bernd Wollscheid Damaris Bausch-Fluck Christine Henderson Robert O'Brien Miriam Bibel Ralph Schiess Ruedi Aebersold Julian D Watts doi:10.1038/nbt.1532 Omics378 2009-04-06 Omics 2009-04-06 10.1038/nbt.1532 http://dx.doi.org/10.1038/nbt.1532 378 386 Gene regulation: A new toolbox for mapping regulatory sites http://dx.doi.org/10.1038/nrg2584 Gene regulation: A new toolbox for mapping regulatory sites

Omics282 . doi:10.1038/nrg2584

Author: Meera Swami

]]> Gene regulation: A new toolbox for mapping regulatory sites Meera Swami doi:10.1038/nrg2584 Omics282 Omics 10.1038/nrg2584 http://dx.doi.org/10.1038/nrg2584 282 283 Developmental programming of CpG island methylation profiles in the human genome http://dx.doi.org/10.1038/nsmb.1594 Developmental programming of CpG island methylation profiles in the human genome

Omics564 . doi:10.1038/nsmb.1594

Authors: Ravid Straussman, Deborah Nejman, Douglas Roberts, Israel Steinfeld, Barak Blum, Nissim Benvenisty, Itamar Simon, Zohar Yakhini & Howard Cedar

]]> Developmental programming of CpG island methylation profiles in the human genome Ravid Straussman Deborah Nejman Douglas Roberts Israel Steinfeld Barak Blum Nissim Benvenisty Itamar Simon Zohar Yakhini Howard Cedar doi:10.1038/nsmb.1594 Omics564 2009-04-19 Omics 2009-04-19 10.1038/nsmb.1594 http://dx.doi.org/10.1038/nsmb.1594 564 571 Analysis of the eukaryotic prenylome by isoprenoid affinity tagging http://dx.doi.org/10.1038/nchembio.149 Analysis of the eukaryotic prenylome by isoprenoid affinity tagging

Omics227 . doi:10.1038/nchembio.149

Authors: Uyen T T Nguyen, Zhong Guo, Christine Delon, Yaowen Wu, Celine Deraeve, Benjamin Fränzel, Robin S Bon, Wulf Blankenfeldt, Roger S Goody, Herbert Waldmann, Dirk Wolters & Kirill Alexandrov

]]> Analysis of the eukaryotic prenylome by isoprenoid affinity tagging Uyen T T Nguyen Zhong Guo Christine Delon Yaowen Wu Celine Deraeve Benjamin Fränzel Robin S Bon Wulf Blankenfeldt Roger S Goody Herbert Waldmann Dirk Wolters Kirill Alexandrov doi:10.1038/nchembio.149 Omics227 2009-02-15 Omics 2009-02-15 10.1038/nchembio.149 http://dx.doi.org/10.1038/nchembio.149 227 235 HIV-1 and microvesicles from T cells share a common glycome, arguing for a common origin http://dx.doi.org/10.1038/nchembio.151 HIV-1 and microvesicles from T cells share a common glycome, arguing for a common origin

Omics244 . doi:10.1038/nchembio.151

Authors: Lakshmi Krishnamoorthy, Julian W Bess, Alex B Preston, Kunio Nagashima & Lara K Mahal

]]> HIV-1 and microvesicles from T cells share a common glycome, arguing for a common origin Lakshmi Krishnamoorthy Julian W Bess Alex B Preston Kunio Nagashima Lara K Mahal doi:10.1038/nchembio.151 Omics244 2009-02-22 Omics 2009-02-22 10.1038/nchembio.151 http://dx.doi.org/10.1038/nchembio.151 244 250 Enzymatic assembly of DNA molecules up to several hundred kilobases http://dx.doi.org/10.1038/nmeth.1318 Enzymatic assembly of DNA molecules up to several hundred kilobases

Omics343 . doi:10.1038/nmeth.1318

Authors: Daniel G Gibson, Lei Young, Ray-Yuan Chuang, J Craig Venter, Clyde A Hutchison & Hamilton O Smith

]]> Enzymatic assembly of DNA molecules up to several hundred kilobases Daniel G Gibson Lei Young Ray-Yuan Chuang J Craig Venter Clyde A Hutchison Hamilton O Smith doi:10.1038/nmeth.1318 Omics343 2009-04-12 Omics 2009-04-12 10.1038/nmeth.1318 http://dx.doi.org/10.1038/nmeth.1318 343 345 Universal sample preparation method for proteome analysis http://dx.doi.org/10.1038/nmeth.1322 Universal sample preparation method for proteome analysis

Omics359 . doi:10.1038/nmeth.1322

Authors: Jacek R Wiśniewski, Alexandre Zougman, Nagarjuna Nagaraj & Matthias Mann

]]> Universal sample preparation method for proteome analysis Jacek R Wiśniewski Alexandre Zougman Nagarjuna Nagaraj Matthias Mann doi:10.1038/nmeth.1322 Omics359 2009-04-19 Omics 2009-04-19 10.1038/nmeth.1322 http://dx.doi.org/10.1038/nmeth.1322 359 362 mRNA-Seq whole-transcriptome analysis of a single cell http://dx.doi.org/10.1038/nmeth.1315 mRNA-Seq whole-transcriptome analysis of a single cell

Omics377 . doi:10.1038/nmeth.1315

Authors: Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B Tuch, Asim Siddiqui, Kaiqin Lao & M Azim Surani

]]> mRNA-Seq whole-transcriptome analysis of a single cell Fuchou Tang Catalin Barbacioru Yangzhou Wang Ellen Nordman Clarence Lee Nanlan Xu Xiaohui Wang John Bodeau Brian B Tuch Asim Siddiqui Kaiqin Lao M Azim Surani doi:10.1038/nmeth.1315 Omics377 2009-04-06 Omics 2009-04-06 10.1038/nmeth.1315 http://dx.doi.org/10.1038/nmeth.1315 377 382 Complex disease: Autism clues from genome-wide studies http://dx.doi.org/10.1038/nrg2599 Complex disease: Autism clues from genome-wide studies

Omics346 . doi:10.1038/nrg2599

Author: Louisa Flintoft

]]> Complex disease: Autism clues from genome-wide studies Louisa Flintoft doi:10.1038/nrg2599 Omics346 Omics 10.1038/nrg2599 http://dx.doi.org/10.1038/nrg2599 346 347 Genomics: Milking the cow genome http://dx.doi.org/10.1038/nrg2598 Genomics: Milking the cow genome

Omics346 . doi:10.1038/nrg2598

Author: Mary Muers

]]> Genomics: Milking the cow genome Mary Muers doi:10.1038/nrg2598 Omics346 Omics 10.1038/nrg2598 http://dx.doi.org/10.1038/nrg2598 346 347 Cancer genomics: A modular approach to signalling http://dx.doi.org/10.1038/nrg2595 Cancer genomics: A modular approach to signalling

Omics348 . doi:10.1038/nrg2595

Author: Meera Swami

]]> Cancer genomics: A modular approach to signalling Meera Swami doi:10.1038/nrg2595 Omics348 Omics 10.1038/nrg2595 http://dx.doi.org/10.1038/nrg2595 348 349 Genetics of gene expression: Putting radiation response on the map http://dx.doi.org/10.1038/nrg2587 Genetics of gene expression: Putting radiation response on the map

Omics278 . doi:10.1038/nrg2587

Author: Louisa Flintoft

]]> Genetics of gene expression: Putting radiation response on the map Louisa Flintoft doi:10.1038/nrg2587 Omics278 Omics 10.1038/nrg2587 http://dx.doi.org/10.1038/nrg2587 278 278 Genetic susceptibility to SLE: new insights from fine mapping and genome-wide association studies http://dx.doi.org/10.1038/nrg2571 Genetic susceptibility to SLE: new insights from fine mapping and genome-wide association studies

Omics285 . doi:10.1038/nrg2571

Authors: Isaac T. W. Harley, Kenneth M. Kaufman, Carl D. Langefeld, John B. Harley & Jennifer A. Kelly

]]> Genetic susceptibility to SLE: new insights from fine mapping and genome-wide association studies Isaac T. W. Harley Kenneth M. Kaufman Carl D. Langefeld John B. Harley Jennifer A. Kelly doi:10.1038/nrg2571 Omics285 Omics 10.1038/nrg2571 http://dx.doi.org/10.1038/nrg2571 285 290 Validating, augmenting and refining genome-wide association signals http://dx.doi.org/10.1038/nrg2544 Validating, augmenting and refining genome-wide association signals

Omics318 . doi:10.1038/nrg2544

Authors: John P. A. Ioannidis, Gilles Thomas & Mark J. Daly

]]> Validating, augmenting and refining genome-wide association signals John P. A. Ioannidis Gilles Thomas Mark J. Daly doi:10.1038/nrg2544 Omics318 Omics 10.1038/nrg2544 http://dx.doi.org/10.1038/nrg2544 318 329 Data sharing in genomics — re-shaping scientific practice http://dx.doi.org/10.1038/nrg2573 Data sharing in genomics — re-shaping scientific practice

Omics331 . doi:10.1038/nrg2573

Authors: Jane Kaye, Catherine Heeney, Naomi Hawkins, Jantina de Vries & Paula Boddington

]]> Data sharing in genomics — re-shaping scientific practice Jane Kaye Catherine Heeney Naomi Hawkins Jantina de Vries Paula Boddington doi:10.1038/nrg2573 Omics331 Omics 10.1038/nrg2573 http://dx.doi.org/10.1038/nrg2573 331 335 Proteomics: Biomarkers on a nanoscale http://dx.doi.org/10.1038/nrc2659 Proteomics: Biomarkers on a nanoscale

Omics382 . doi:10.1038/nrc2659

Author: Gemma K. Alderton

]]> Proteomics: Biomarkers on a nanoscale Gemma K. Alderton doi:10.1038/nrc2659 Omics382 2009-04-30 Omics 2009-04-30 10.1038/nrc2659 http://dx.doi.org/10.1038/nrc2659 382 383 Using movies to analyse gene circuit dynamics in single cells http://dx.doi.org/10.1038/nrmicro2056 Using movies to analyse gene circuit dynamics in single cells

Omics383 . doi:10.1038/nrmicro2056

Authors: James C. W. Locke & Michael B. Elowitz

]]> Using movies to analyse gene circuit dynamics in single cells James C. W. Locke Michael B. Elowitz doi:10.1038/nrmicro2056 Omics383 Omics 10.1038/nrmicro2056 http://dx.doi.org/10.1038/nrmicro2056 383 392 Prions: Prying into prions http://dx.doi.org/10.1038/nrm2692 Prions: Prying into prions

Omics372 . doi:10.1038/nrm2692

Author: Katharine H. Wrighton

]]> Prions: Prying into prions Katharine H. Wrighton doi:10.1038/nrm2692 Omics372 2009-04-29 Omics 2009-04-29 10.1038/nrm2692 http://dx.doi.org/10.1038/nrm2692 372 372 The microbial ocean from genomes to biomes http://dx.doi.org/10.1038/nature08059 The microbial ocean from genomes to biomes

Omics200 . doi:10.1038/nature08059

Author: Edward F. DeLong

]]> The microbial ocean from genomes to biomes Edward F. DeLong doi:10.1038/nature08059 Omics200 2009-05-13 Omics 2009-05-13 10.1038/nature08059 http://dx.doi.org/10.1038/nature08059 200 206 Population genetics: Genetic landscapes out of Africa http://dx.doi.org/10.1038/nrg2605 Population genetics: Genetic landscapes out of Africa

Omics345 . doi:10.1038/nrg2605

Author: Mary Muers

]]> Population genetics: Genetic landscapes out of Africa Mary Muers doi:10.1038/nrg2605 Omics345 Omics 10.1038/nrg2605 http://dx.doi.org/10.1038/nrg2605 345 345 Synthetic biology: Towards off-the-shelf networks http://dx.doi.org/10.1038/nrg2602 Synthetic biology: Towards off-the-shelf networks

Omics348 . doi:10.1038/nrg2602

Author: Tanita Casci

]]> Synthetic biology: Towards off-the-shelf networks Tanita Casci doi:10.1038/nrg2602 Omics348 Omics 10.1038/nrg2602 http://dx.doi.org/10.1038/nrg2602 348 348 New insights into the aetiology of colorectal cancer from genome-wide association studies http://dx.doi.org/10.1038/nrg2574 New insights into the aetiology of colorectal cancer from genome-wide association studies

Omics353 . doi:10.1038/nrg2574

Authors: Albert Tenesa & Malcolm G. Dunlop

]]> New insights into the aetiology of colorectal cancer from genome-wide association studies Albert Tenesa Malcolm G. Dunlop doi:10.1038/nrg2574 Omics353 Omics 10.1038/nrg2574 http://dx.doi.org/10.1038/nrg2574 353 358 Towards better mouse models: enhanced genotypes, systemic phenotyping and envirotype modelling http://dx.doi.org/10.1038/nrg2578 Towards better mouse models: enhanced genotypes, systemic phenotyping and envirotype modelling

Omics371 . doi:10.1038/nrg2578

Authors: Johannes Beckers, Wolfgang Wurst & Martin Hrabé de Angelis

]]> Towards better mouse models: enhanced genotypes, systemic phenotyping and envirotype modelling Johannes Beckers Wolfgang Wurst Martin Hrabé de Angelis doi:10.1038/nrg2578 Omics371 Omics 10.1038/nrg2578 http://dx.doi.org/10.1038/nrg2578 371 380 Mapping genes for complex traits in domestic animals and their use in breeding programmes http://dx.doi.org/10.1038/nrg2575 Mapping genes for complex traits in domestic animals and their use in breeding programmes

Omics381 . doi:10.1038/nrg2575

Authors: Michael E. Goddard & Ben J. Hayes

]]> Mapping genes for complex traits in domestic animals and their use in breeding programmes Michael E. Goddard Ben J. Hayes doi:10.1038/nrg2575 Omics381 Omics 10.1038/nrg2575 http://dx.doi.org/10.1038/nrg2575 381 391 Detecting gene–gene interactions that underlie human diseases http://dx.doi.org/10.1038/nrg2579 Detecting gene–gene interactions that underlie human diseases

Omics392 . doi:10.1038/nrg2579

Author: Heather J Cordell

]]> Detecting gene–gene interactions that underlie human diseases Heather J Cordell doi:10.1038/nrg2579 Omics392 Omics 10.1038/nrg2579 http://dx.doi.org/10.1038/nrg2579 392 404 High-throughput insertional mutagenesis screens in mice to identify oncogenic networks http://dx.doi.org/10.1038/nrc2647 High-throughput insertional mutagenesis screens in mice to identify oncogenic networks

Omics389 . doi:10.1038/nrc2647

Authors: Jaap Kool & Anton Berns

]]> High-throughput insertional mutagenesis screens in mice to identify oncogenic networks Jaap Kool Anton Berns doi:10.1038/nrc2647 Omics389 Omics 10.1038/nrc2647 http://dx.doi.org/10.1038/nrc2647 389 399 Drug interactions and the evolution of antibiotic resistance http://dx.doi.org/10.1038/nrmicro2133 Drug interactions and the evolution of antibiotic resistance

Omics460 . doi:10.1038/nrmicro2133

Authors: Pamela J. Yeh, Matthew J. Hegreness, Aviva Presser Aiden & Roy Kishony

]]> Drug interactions and the evolution of antibiotic resistance Pamela J. Yeh Matthew J. Hegreness Aviva Presser Aiden Roy Kishony doi:10.1038/nrmicro2133 Omics460 Omics 10.1038/nrmicro2133 http://dx.doi.org/10.1038/nrmicro2133 460 466 The second wave of synthetic biology: from modules to systems http://dx.doi.org/10.1038/nrm2698 The second wave of synthetic biology: from modules to systems

Omics410 . doi:10.1038/nrm2698

Authors: Priscilla E. M. Purnick & Ron Weiss

]]> The second wave of synthetic biology: from modules to systems Priscilla E. M. Purnick Ron Weiss doi:10.1038/nrm2698 Omics410 Omics 10.1038/nrm2698 http://dx.doi.org/10.1038/nrm2698 410 422 Neurogenetics: Common changes in autism http://dx.doi.org/10.1038/nrn2658 Neurogenetics: Common changes in autism

Omics395 . doi:10.1038/nrn2658

Author: Louisa Flintoft

]]> Neurogenetics: Common changes in autism Louisa Flintoft doi:10.1038/nrn2658 Omics395 Omics 10.1038/nrn2658 http://dx.doi.org/10.1038/nrn2658 395 395 Evaluation of C1q genomic region in minority racial groups of lupus http://dx.doi.org/10.1038/gene.2009.33 Evaluation of C1q genomic region in minority racial groups of lupus

Omics. doi:10.1038/gene.2009.33

Authors: B Namjou, C Gray-McGuire, A L Sestak, G S Gilkeson, C O Jacob, J T Merrill, J A James, E K Wakeland, Q-Z Li, C D Langefeld, J Divers, J Ziegler, K L Moser, J A Kelly, K M Kaufman & J B Harley

]]> Evaluation of C1q genomic region in minority racial groups of lupus B Namjou C Gray-McGuire A L Sestak G S Gilkeson C O Jacob J T Merrill J A James E K Wakeland Q-Z Li C D Langefeld J Divers J Ziegler K L Moser J A Kelly K M Kaufman J B Harley doi:10.1038/gene.2009.33 Omics 2009-05-14 Omics 2009-05-14 10.1038/gene.2009.33 http://dx.doi.org/10.1038/gene.2009.33 Autism genome-wide copy number variation reveals ubiquitin and neuronal genes http://dx.doi.org/10.1038/nature07953 Autism genome-wide copy number variation reveals ubiquitin and neuronal genes

Omics569 . doi:10.1038/nature07953

Authors: Joseph T. Glessner, Kai Wang, Guiqing Cai, Olena Korvatska, Cecilia E. Kim, Shawn Wood, Haitao Zhang, Annette Estes, Camille W. Brune, Jonathan P. Bradfield, Marcin Imielinski, Edward C. Frackelton, Jennifer Reichert, Emily L. Crawford, Jeffrey Munson, Patrick M. A. Sleiman, Rosetta Chiavacci, Kiran Annaiah, Kelly Thomas, Cuiping Hou, Wendy Glaberson, James Flory, Frederick Otieno, Maria Garris, Latha Soorya, Lambertus Klei, Joseph Piven, Kacie J. Meyer, Evdokia Anagnostou, Takeshi Sakurai, Rachel M. Game, Danielle S. Rudd, Danielle Zurawiecki, Christopher J. McDougle, Lea K. Davis, Judith Miller, David J. Posey, Shana Michaels, Alexander Kolevzon, Jeremy M. Silverman, Raphael Bernier, Susan E. Levy, Robert T. Schultz, Geraldine Dawson, Thomas Owley, William M. McMahon, Thomas H. Wassink, John A. Sweeney, John I. Nurnberger, Hilary Coon, James S. Sutcliffe, Nancy J. Minshew, Struan F. A. Grant, Maja Bucan, Edwin H. Cook, Joseph D. Buxbaum, Bernie Devlin, Gerard D. Schellenberg & Hakon Hakonarson

]]> Autism genome-wide copy number variation reveals ubiquitin and neuronal genes Joseph T. Glessner Kai Wang Guiqing Cai Olena Korvatska Cecilia E. Kim Shawn Wood Haitao Zhang Annette Estes Camille W. Brune Jonathan P. Bradfield Marcin Imielinski Edward C. Frackelton Jennifer Reichert Emily L. Crawford Jeffrey Munson Patrick M. A. Sleiman Rosetta Chiavacci Kiran Annaiah Kelly Thomas Cuiping Hou Wendy Glaberson James Flory Frederick Otieno Maria Garris Latha Soorya Lambertus Klei Joseph Piven Kacie J. Meyer Evdokia Anagnostou Takeshi Sakurai Rachel M. Game Danielle S. Rudd Danielle Zurawiecki Christopher J. McDougle Lea K. Davis Judith Miller David J. Posey Shana Michaels Alexander Kolevzon Jeremy M. Silverman Raphael Bernier Susan E. Levy Robert T. Schultz Geraldine Dawson Thomas Owley William M. McMahon Thomas H. Wassink John A. Sweeney John I. Nurnberger Hilary Coon James S. Sutcliffe Nancy J. Minshew Struan F. A. Grant Maja Bucan Edwin H. Cook Joseph D. Buxbaum Bernie Devlin Gerard D. Schellenberg Hakon Hakonarson doi:10.1038/nature07953 Omics569 2009-04-28 Omics 2009-04-28 10.1038/nature07953 http://dx.doi.org/10.1038/nature07953 569 573 Proteomic analysis of S-nitrosylation and denitrosylation by resin-assisted capture http://dx.doi.org/10.1038/nbt.1545 Proteomic analysis of S-nitrosylation and denitrosylation by resin-assisted capture

Omics557 . doi:10.1038/nbt.1545

Authors: Michael T Forrester, J Will Thompson, Matthew W Foster, Leonardo Nogueira, M Arthur Moseley & Jonathan S Stamler

]]> Proteomic analysis of S-nitrosylation and denitrosylation by resin-assisted capture Michael T Forrester J Will Thompson Matthew W Foster Leonardo Nogueira M Arthur Moseley Jonathan S Stamler doi:10.1038/nbt.1545 Omics557 2009-05-31 Omics 2009-05-31 10.1038/nbt.1545 http://dx.doi.org/10.1038/nbt.1545 557 559 Genome sequence of the recombinant protein production host Pichia pastoris http://dx.doi.org/10.1038/nbt.1544 Genome sequence of the recombinant protein production host Pichia pastoris

Omics561 . doi:10.1038/nbt.1544

Authors: Kristof De Schutter, Yao-Cheng Lin, Petra Tiels, Annelies Van Hecke, Sascha Glinka, Jacqueline Weber-Lehmann, Pierre Rouzé, Yves Van de Peer & Nico Callewaert

]]> Genome sequence of the recombinant protein production host Pichia pastoris Kristof De Schutter Yao-Cheng Lin Petra Tiels Annelies Van Hecke Sascha Glinka Jacqueline Weber-Lehmann Pierre Rouzé Yves Van de Peer Nico Callewaert doi:10.1038/nbt.1544 Omics561 2009-05-24 Omics 2009-05-24 10.1038/nbt.1544 http://dx.doi.org/10.1038/nbt.1544 561 566 Evolution of pathogenicity and sexual reproduction in eight Candida genomes http://dx.doi.org/10.1038/nature08064 Evolution of pathogenicity and sexual reproduction in eight Candida genomes

Omics657 . doi:10.1038/nature08064

Authors: Geraldine Butler, Matthew D. Rasmussen, Michael F. Lin, Manuel A. S. Santos, Sharadha Sakthikumar, Carol A. Munro, Esther Rheinbay, Manfred Grabherr, Anja Forche, Jennifer L. Reedy, Ino Agrafioti, Martha B. Arnaud, Steven Bates, Alistair J. P. Brown, Sascha Brunke, Maria C. Costanzo, David A. Fitzpatrick, Piet W. J. de Groot, David Harris, Lois L. Hoyer, Bernhard Hube, Frans M. Klis, Chinnappa Kodira, Nicola Lennard, Mary E. Logue, Ronny Martin, Aaron M. Neiman, Elissavet Nikolaou, Michael A. Quail, Janet Quinn, Maria C. Santos, Florian F. Schmitzberger, Gavin Sherlock, Prachi Shah, Kevin A. T. Silverstein, Marek S. Skrzypek, David Soll, Rodney Staggs, Ian Stansfield, Michael P. H. Stumpf, Peter E. Sudbery, Thyagarajan Srikantha, Qiandong Zeng, Judith Berman, Matthew Berriman, Joseph Heitman, Neil A. R. Gow, Michael C. Lorenz, Bruce W. Birren, Manolis Kellis & Christina A. Cuomo

]]> Evolution of pathogenicity and sexual reproduction in eight Candida genomes Geraldine Butler Matthew D. Rasmussen Michael F. Lin Manuel A. S. Santos Sharadha Sakthikumar Carol A. Munro Esther Rheinbay Manfred Grabherr Anja Forche Jennifer L. Reedy Ino Agrafioti Martha B. Arnaud Steven Bates Alistair J. P. Brown Sascha Brunke Maria C. Costanzo David A. Fitzpatrick Piet W. J. de Groot David Harris Lois L. Hoyer Bernhard Hube Frans M. Klis Chinnappa Kodira Nicola Lennard Mary E. Logue Ronny Martin Aaron M. Neiman Elissavet Nikolaou Michael A. Quail Janet Quinn Maria C. Santos Florian F. Schmitzberger Gavin Sherlock Prachi Shah Kevin A. T. Silverstein Marek S. Skrzypek David Soll Rodney Staggs Ian Stansfield Michael P. H. Stumpf Peter E. Sudbery Thyagarajan Srikantha Qiandong Zeng Judith Berman Matthew Berriman Joseph Heitman Neil A. R. Gow Michael C. Lorenz Bruce W. Birren Manolis Kellis Christina A. Cuomo doi:10.1038/nature08064 Omics657 2009-05-24 Omics 2009-05-24 10.1038/nature08064 http://dx.doi.org/10.1038/nature08064 657 662 Small RNAs: Microbial metatranscriptomics goes deep http://dx.doi.org/10.1038/nrg2616 Small RNAs: Microbial metatranscriptomics goes deep

Omics426 . doi:10.1038/nrg2616

Author: Mary Muers

]]> Small RNAs: Microbial metatranscriptomics goes deep Mary Muers doi:10.1038/nrg2616 Omics426 2009-06-09 Omics 2009-06-09 10.1038/nrg2616 http://dx.doi.org/10.1038/nrg2616 426 427 Transcriptomics: Revealing the extent of RNA editing http://dx.doi.org/10.1038/nrg2623 Transcriptomics: Revealing the extent of RNA editing

Omics426 . doi:10.1038/nrg2623

Author: Louisa Flintoft

]]> Transcriptomics: Revealing the extent of RNA editing Louisa Flintoft doi:10.1038/nrg2623 Omics426 Omics 10.1038/nrg2623 http://dx.doi.org/10.1038/nrg2623 426 427 The genetic contribution to non-syndromic human obesity http://dx.doi.org/10.1038/nrg2594 The genetic contribution to non-syndromic human obesity

Omics431 . doi:10.1038/nrg2594

Authors: Andrew J. Walley, Julian E. Asher & Philippe Froguel

]]> The genetic contribution to non-syndromic human obesity Andrew J. Walley Julian E. Asher Philippe Froguel doi:10.1038/nrg2594 Omics431 Omics 10.1038/nrg2594 http://dx.doi.org/10.1038/nrg2594 431 442 From DNA sequence to transcriptional behaviour: a quantitative approach http://dx.doi.org/10.1038/nrg2591 From DNA sequence to transcriptional behaviour: a quantitative approach

Omics443 . doi:10.1038/nrg2591

Authors: Eran Segal & Jonathan Widom

]]> From DNA sequence to transcriptional behaviour: a quantitative approach Eran Segal Jonathan Widom doi:10.1038/nrg2591 Omics443 Omics 10.1038/nrg2591 http://dx.doi.org/10.1038/nrg2591 443 456 Breast cancer: Prioritizing targets http://dx.doi.org/10.1038/nrc2684 Breast cancer: Prioritizing targets

Omics458 . doi:10.1038/nrc2684

Author: Meera Swami

]]> Breast cancer: Prioritizing targets Meera Swami doi:10.1038/nrc2684 Omics458 Omics 10.1038/nrc2684 http://dx.doi.org/10.1038/nrc2684 458 459 The versatility and adaptation of bacteria from the genus Stenotrophomonas http://dx.doi.org/10.1038/nrmicro2163 The versatility and adaptation of bacteria from the genus Stenotrophomonas

Omics514 . doi:10.1038/nrmicro2163

Authors: Robert P. Ryan, Sebastien Monchy, Massimiliano Cardinale, Safiyh Taghavi, Lisa Crossman, Matthew B. Avison, Gabriele Berg, Daniel van der Lelie & J. Maxwell Dow

]]> The versatility and adaptation of bacteria from the genus Stenotrophomonas Robert P. Ryan Sebastien Monchy Massimiliano Cardinale Safiyh Taghavi Lisa Crossman Matthew B. Avison Gabriele Berg Daniel van der Lelie J. Maxwell Dow doi:10.1038/nrmicro2163 Omics514 Omics 10.1038/nrmicro2163 http://dx.doi.org/10.1038/nrmicro2163 514 525 Gene expression: Complex interactions http://dx.doi.org/10.1038/nrm2716 Gene expression: Complex interactions

Omics444 . doi:10.1038/nrm2716

Author: Francesca Cesari

]]> Gene expression: Complex interactions Francesca Cesari doi:10.1038/nrm2716 Omics444 2009-06-10 Omics 2009-06-10 10.1038/nrm2716 http://dx.doi.org/10.1038/nrm2716 444 444 Addiction: Let me count the genes http://dx.doi.org/10.1038/nrn2675 Addiction: Let me count the genes

Omics472 . doi:10.1038/nrn2675

Author: Leonie Welberg

]]> Addiction: Let me count the genes Leonie Welberg doi:10.1038/nrn2675 Omics472 Omics 10.1038/nrn2675 http://dx.doi.org/10.1038/nrn2675 472 473