Organisms - Eukaryotes

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• Comparative, evolutionary and population genomics

  • title

    A relaxed approach to errors

    journal

    Nature Reviews Genetics

    date

    9 September 2005

    • Full text
    • PDF (260K)

  • title

    Steps in the evolution of heteromorphic sex chromosomes

    journal

    Heredity

    date

    25 May 2005

    • Abstract
    • Full text
    • PDF (156K)

  • title

    The genome of the social amoeba Dictyostelium discoideum

    journal

    Nature

    date

    5 May 2005

    • Abstract
    • Full text
    • PDF (968K)

  • title

    Estimation of the rate and effects of deleterious genomic mutations in finite populations with linkage disequilibrium

    journal

    Heredity

    date

    4 May 2005

    • Abstract
    • Full text
    • PDF (197K)

  • title

    Phylogenomics and the reconstruction of the tree of life

    journal

    Nature Reviews Genetics

    date

    1 May 2005

    • Abstract
    • Full text
    • PDF (1,097K)

  • title

    Sociogenomics: social life in molecular terms

    journal

    Nature Reviews Genetics

    date

    10 March 2005

    • Abstract
    • Full text
    • PDF (526K)

  • title

    Detection of parallel functional modules by comparative analysis of genome sequences

    journal

    Nature Biotechnology

    date

    4 February 2005

    • Abstract
    • Full text
    • PDF (613K)

  • title

    A universal trend of amino acid gain and loss in protein evolution

    journal

    Nature

    date

    19 January 2005

    • Abstract
    • Full text
    • PDF (242K)

  • title

    The ecology of the genome — mobile DNA elements and their hosts

    journal

    Nature Reviews Genetics

    date

    10 January 2005

    • Abstract
    • Full text
    • PDF (206K)

• Epigenomics

  • title

    Regulation of HP1–chromatin binding by histone H3 methylation and phosphorylation

    journal

    Nature

    date

    12 October 2005

    • Abstract
    • Full text
    • PDF (878K)

  • title

    All silent on the transcription front

    journal

    Nature Methods

    date

    1 October 2005

    • Abstract
    • Full text
    • PDF (148K)

  • title

    Beyond genomics

    journal

    Nature Genetics

    date

    1 June 2005

    • Full text
    • PDF (50K)

  • title

    Mapping of genetic and epigenetic regulatory networks using microarrays

    journal

    Nature Genetics

    date

    1 June 2005

    • Abstract
    • Full text
    • PDF (348K)

• Genetics of Gene Expression

  • title

    How parasites do it

    journal

    Nature Methods

    date

    1 August 2005

    • Abstract
    • Full text
    • PDF (49K)

  • title

    Design of a genome-wide siRNA library using an artificial neural network

    journal

    Nature Biotechnology

    date

    17 July 2005

    • Abstract
    • Full text
    • PDF (298K)

  • title

    Stochasticity in gene expression: from theories to phenotypes

    journal

    Nature Reviews Genetics

    date

    10 May 2005

    • Abstract
    • Full text
    • PDF (531K)

• Genome sequence and analysis

  • title

    Food for thought

    journal

    Nature Reviews Microbiology

    date

    10 November 2005

    • Abstract
    • Full text
    • PDF (231K)

  • title

    From XML to RDF: how semantic web technologies will change the design of 'omic' standards

    journal

    Nature Biotechnology

    date

    7 September 2005

    • Abstract
    • Full text
    • PDF (232K)

  • title

    The sociable gene

    journal

    EMBO reports

    date

    1 September 2005

    • Abstract
    • Full text
    • PDF (36K)

  • title

    Synergy between sequence and size in Large-scale genomics

    journal

    Nature Reviews Genetics

    date

    1 September 2005

    • Abstract
    • Full text
    • PDF (375K)

  • title

    Three deadly trypanosomatids decoded

    journal

    Nature Reviews Genetics

    date

    10 August 2005

    • Full text
    • PDF (102K)

  • title

    Slimy mucus? Decode it, idiot!

    journal

    Nature Reviews Genetics

    date

    1 June 2005

    • Full text
    • PDF (144K)

  • title

    The genome of the social amoeba Dictyostelium discoideum

    journal

    Nature

    date

    5 May 2005

    • Abstract
    • Full text
    • PDF (968K)

  • title

    Genome coverage, literally speaking

    journal

    EMBO reports

    date

    1 May 2005

    • Abstract
    • Full text
    • PDF (154K)

  • title

    Detection of parallel functional modules by comparative analysis of genome sequences

    journal

    Nature Biotechnology

    date

    4 February 2005

    • Abstract
    • Full text
    • PDF (613K)

  • title

    Assessing computational tools for the discovery of transcription factor binding sites

    journal

    Nature Biotechnology

    date

    6 January 2005

    • Abstract
    • Full text
    • PDF (204K)

• Glycomics

  • title

    Exploring life's sweet spot

    journal

    Nature

    date

    26 October 2005

    • Abstract
    • Full text
    • PDF (217K)

• Pharmacogenomics

  • title

    Insulators are fundamental components of the eukaryotic genomes

    journal

    Heredity

    date

    6 April 2005

    • Abstract
    • Full text
    • PDF (145K)

• Proteomics

  • title

    A protein interaction network of the malaria parasite Plasmodium falciparum

    journal

    Nature

    date

    3 November 2005

    • Abstract
    • Full text
    • PDF (407K)

  • title

    The Plasmodium protein network diverges from those of other eukaryotes

    journal

    Nature

    date

    3 November 2005

    • Abstract
    • Full text
    • PDF (711K)

  • title

    Glycoproteomics: protein modifications for versatile functions

    journal

    EMBO reports

    date

    14 October 2005

    • Abstract
    • Full text
    • PDF (275K)

  • title

    The Cbl interactome and its functions

    journal

    Nature Reviews Molecular Cell Biology

    date

    14 October 2005

    • Abstract
    • Full text
    • PDF (724K)

  • title

    From XML to RDF: how semantic web technologies will change the design of 'omic' standards

    journal

    Nature Biotechnology

    date

    7 September 2005

    • Abstract
    • Full text
    • PDF (232K)

  • title

    Proteomics of organelles and large cellular structures

    journal

    Nature Reviews Molecular Cell Biology

    date

    1 September 2005

    • Abstract
    • Full text
    • PDF (647K)

  • title

    A uniform proteomics MS/MS analysis platform utilizing open XML file formats

    journal

    Molecular Systems Biology

    date

    2 August 2005

    • Abstract
    • Full text
    • PDF (162K)

  • title

    Weighing in on ubiquitin: the expanding role of mass-spectrometry-based proteomics

    journal

    Nature Cell Biology

    date

    1 August 2005

    • Abstract
    • Full text
    • PDF (352K)

  • title

    Effect of sampling on topology predictions of protein-protein interaction networks

    journal

    Nature Biotechnology

    date

    7 July 2005

    • Abstract
    • Full text
    • PDF (536K)

  • title

    Fluorous proteomics

    journal

    Nature Methods

    date

    1 June 2005

    • Abstract
    • Full text
    • PDF (70K)

  • title

    The genome of the social amoeba Dictyostelium discoideum

    journal

    Nature

    date

    5 May 2005

    • Abstract
    • Full text
    • PDF (968K)

  • title

    Enrichment and analysis of peptide subsets using fluorous affinity tags and mass spectrometry

    journal

    Nature Biotechnology

    date

    13 March 2005

    • Abstract
    • Full text
    • PDF (585K)

  • title

    Toward data standards for proteomics

    journal

    Nature Biotechnology

    date

    1 March 2005

    • Full text
    • PDF (166K)

  • title

    A new method for C-terminal sequence analysis in the proteomic era

    journal

    Nature Methods

    date

    17 February 2005

    • Abstract
    • Full text
    • PDF (294K)

• Systems biology

  • title

    Applied systems biology and malaria

    journal

    Nature Reviews Microbiology

    date

    16 December 2005

    • Abstract
    • Full text
    • PDF (288K)

  • title

    Systems biology: Linked-up loops: a reliable means of control

    journal

    Nature Reviews Genetics

    date

    1 December 2005

    • Full text
    • PDF (132K)

  • title

    Emergent behavior of growing knowledge about molecular interactions

    journal

    Nature Biotechnology

    date

    1 October 2005

    • Abstract
    • Full text
    • PDF (676K)

  • title

    A uniform proteomics MS/MS analysis platform utilizing open XML file formats

    journal

    Molecular Systems Biology

    date

    2 August 2005

    • Abstract
    • Full text
    • PDF (162K)

  • title

    Functional Annotation: Extracting functional and regulatory order from microarrays

    journal

    Molecular Systems Biology

    date

    25 May 2005

    • Full text
    • PDF (66K)

  • title

    Universal epistasis analysis

    journal

    Nature Genetics

    date

    1 May 2005

    • Abstract
    • Full text
    • PDF (183K)

  • title

    Epistasis analysis with global transcriptional phenotypes

    journal

    Nature Genetics

    date

    10 April 2005

    • Abstract
    • Full text
    • PDF (438K)

  • title

    International alliances for quantitative modeling in systems biology

    journal

    Molecular Systems Biology

    date

    29 March 2005

    • Full text
    • PDF (55K)

• Techniques and methods

  • title

    All silent on the transcription front

    journal

    Nature Methods

    date

    1 October 2005

    • Abstract
    • Full text
    • PDF (148K)

  • title

    From XML to RDF: how semantic web technologies will change the design of 'omic' standards

    journal

    Nature Biotechnology

    date

    7 September 2005

    • Abstract
    • Full text
    • PDF (232K)

  • title

    It's cheaper in the Picolab

    journal

    Nature Reviews Genetics

    date

    10 August 2005

    • Full text
    • PDF (179K)

  • title

    A uniform proteomics MS/MS analysis platform utilizing open XML file formats

    journal

    Molecular Systems Biology

    date

    2 August 2005

    • Abstract
    • Full text
    • PDF (162K)

  • title

    How parasites do it

    journal

    Nature Methods

    date

    1 August 2005

    • Abstract
    • Full text
    • PDF (49K)

  • title

    Design of a genome-wide siRNA library using an artificial neural network

    journal

    Nature Biotechnology

    date

    17 July 2005

    • Abstract
    • Full text
    • PDF (298K)

  • title

    Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping

    journal

    Nature Reviews Genetics

    date

    12 July 2005

    • Abstract
    • Full text
    • PDF (416K)

  • title

    Effect of sampling on topology predictions of protein-protein interaction networks

    journal

    Nature Biotechnology

    date

    7 July 2005

    • Abstract
    • Full text
    • PDF (536K)

  • title

    Fluorous proteomics

    journal

    Nature Methods

    date

    1 June 2005

    • Abstract
    • Full text
    • PDF (70K)

  • title

    Miniaturization in functional genomics and proteomics

    journal

    Nature Reviews Genetics

    date

    1 June 2005

    • Abstract
    • Full text
    • PDF (1,121K)

  • title

    Functional Annotation: Extracting functional and regulatory order from microarrays

    journal

    Molecular Systems Biology

    date

    25 May 2005

    • Full text
    • PDF (66K)

  • title

    Estimation of the rate and effects of deleterious genomic mutations in finite populations with linkage disequilibrium

    journal

    Heredity

    date

    4 May 2005

    • Abstract
    • Full text
    • PDF (197K)

  • title

    Immune response in silico (IRIS): immune-specific genes identified from a compendium of microarray expression data

    journal

    Genes and Immunity

    date

    24 March 2005

    • Abstract
    • Full text
    • PDF (431K)

  • title

    Enrichment and analysis of peptide subsets using fluorous affinity tags and mass spectrometry

    journal

    Nature Biotechnology

    date

    13 March 2005

    • Abstract
    • Full text
    • PDF (585K)

  • title

    Laptop biology

    journal

    EMBO reports

    date

    1 March 2005

    • Abstract
    • Full text
    • PDF (144K)

  • title

    Toward data standards for proteomics

    journal

    Nature Biotechnology

    date

    1 March 2005

    • Full text
    • PDF (166K)

  • title

    Genewindow: an interactive tool for visualization of genomic variation

    journal

    Nature Genetics

    date

    1 February 2005

    • Full text
    • PDF (175K)

• Transcriptomics

  • title

    From XML to RDF: how semantic web technologies will change the design of 'omic' standards

    journal

    Nature Biotechnology

    date

    7 September 2005

    • Abstract
    • Full text
    • PDF (232K)

  • title

    Finger pointing

    journal

    Nature Methods

    date

    1 September 2005

    • Abstract
    • Full text
    • PDF (35K)

  • title

    Replication and transcription: Shaping the landscape of the genome

    journal

    Nature Reviews Genetics

    date

    10 August 2005

    • Abstract
    • Full text
    • PDF (1,593K)

  • title

    Functional Annotation: Extracting functional and regulatory order from microarrays

    journal

    Molecular Systems Biology

    date

    25 May 2005

    • Full text
    • PDF (66K)

  • title

    The genome of the social amoeba Dictyostelium discoideum

    journal

    Nature

    date

    5 May 2005

    • Abstract
    • Full text
    • PDF (968K)

  • title

    Profiling epistasis

    journal

    Nature Reviews Genetics

    date

    1 May 2005

    • Full text
    • PDF (123K)

  • title

    Immune response in silico (IRIS): immune-specific genes identified from a compendium of microarray expression data

    journal

    Genes and Immunity

    date

    24 March 2005

    • Abstract
    • Full text
    • PDF (431K)