Organisms - Chordates

  • Comparative, evolutionary and population genomics

    • Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism

      Nature Genetics
      11 December 2005

    • Discovery of regulatory elements in vertebrates through comparative genomics

      Nature Biotechnology
      6 October 2005

    • A relaxed approach to errors

      Nature Reviews Genetics
      9 September 2005

    • Phylogenomics and the reconstruction of the tree of life

      Nature Reviews Genetics
      1 May 2005

    • Genomics: The chicken genome sequence

      Heredity
      13 April 2005

    • Making sense of antisense transcription

      Nature Reviews Genetics
      1 April 2005

    • Sociogenomics: social life in molecular terms

      Nature Reviews Genetics
      10 March 2005

    • The last flag unfurled? A new immunoglobulin isotype in fish expressed in early development

      Nature Immunology
      1 March 2005

    • Detection of parallel functional modules by comparative analysis of genome sequences

      Nature Biotechnology
      4 February 2005

    • The immunoglobulin heavy-chain locus in zebrafish: identification and expression of a previously unknown isotype, immunoglobulin Z

      Nature Immunology
      30 January 2005

    • A universal trend of amino acid gain and loss in protein evolution

      Nature
      19 January 2005

    • A comparative success

      Nature Reviews Genetics
      1 January 2005

  • Epigenomics

  • Genetics of Gene Expression

    • Dissection of epistasis in oligogenic Bardet–Biedl syndrome

      Nature
      4 December 2005

    • Design of a genome-wide siRNA library using an artificial neural network

      Nature Biotechnology
      17 July 2005

    • Stochasticity in gene expression: from theories to phenotypes

      Nature Reviews Genetics
      10 May 2005

  • Genome sequence and analysis

    • Genetic analysis of cavefish reveals molecular convergence in the evolution of albinism

      Nature Genetics
      11 December 2005

    • Genome-wide analysis of retroviral DNA integration

      Nature Reviews Microbiology
      19 September 2005

    • From XML to RDF: how semantic web technologies will change the design of 'omic' standards

      Nature Biotechnology
      7 September 2005

    • The sociable gene

      EMBO reports
      1 September 2005

    • Genome coverage, literally speaking

      EMBO reports
      1 May 2005

    • Genomics: The chicken genome sequence

      Heredity
      13 April 2005

    • The last flag unfurled? A new immunoglobulin isotype in fish expressed in early development

      Nature Immunology
      1 March 2005

    • Detection of parallel functional modules by comparative analysis of genome sequences

      Nature Biotechnology
      4 February 2005

    • The immunoglobulin heavy-chain locus in zebrafish: identification and expression of a previously unknown isotype, immunoglobulin Z

      Nature Immunology
      30 January 2005

    • Assessing computational tools for the discovery of transcription factor binding sites

      Nature Biotechnology
      6 January 2005

    • Pecking away at evolution

      Nature Reviews Genetics
      1 January 2005

  • Glycomics

  • Proteomics

    • Glycoproteomics: protein modifications for versatile functions

      EMBO reports
      14 October 2005

    • The Cbl interactome and its functions

      Nature Reviews Molecular Cell Biology
      14 October 2005

    • From XML to RDF: how semantic web technologies will change the design of 'omic' standards

      Nature Biotechnology
      7 September 2005

    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats

      Molecular Systems Biology
      2 August 2005

    • Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides

      Nature Methods
      21 July 2005

    • Effect of sampling on topology predictions of protein-protein interaction networks

      Nature Biotechnology
      7 July 2005

    • Enrichment and analysis of peptide subsets using fluorous affinity tags and mass spectrometry

      Nature Biotechnology
      13 March 2005

    • Toward data standards for proteomics

      Nature Biotechnology
      1 March 2005

  • Systems biology

    • Systems biology: Linked-up loops: a reliable means of control

      Nature Reviews Genetics
      1 December 2005

    • Emergent behavior of growing knowledge about molecular interactions

      Nature Biotechnology
      1 October 2005

    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats

      Molecular Systems Biology
      2 August 2005

    • Functional Annotation: Extracting functional and regulatory order from microarrays

      Molecular Systems Biology
      25 May 2005

    • International alliances for quantitative modeling in systems biology

      Molecular Systems Biology
      29 March 2005

  • Techniques and methods

    • From XML to RDF: how semantic web technologies will change the design of 'omic' standards

      Nature Biotechnology
      7 September 2005

    • It's cheaper in the Picolab

      Nature Reviews Genetics
      10 August 2005

    • A uniform proteomics MS/MS analysis platform utilizing open XML file formats

      Molecular Systems Biology
      2 August 2005

    • Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides

      Nature Methods
      21 July 2005

    • Design of a genome-wide siRNA library using an artificial neural network

      Nature Biotechnology
      17 July 2005

    • Facilitating genome navigation: survey sequencing and dense radiation-hybrid gene mapping

      Nature Reviews Genetics
      12 July 2005

    • Effect of sampling on topology predictions of protein-protein interaction networks

      Nature Biotechnology
      7 July 2005

    • Miniaturization in functional genomics and proteomics

      Nature Reviews Genetics
      1 June 2005

    • Functional Annotation: Extracting functional and regulatory order from microarrays

      Molecular Systems Biology
      25 May 2005

    • Enrichment and analysis of peptide subsets using fluorous affinity tags and mass spectrometry

      Nature Biotechnology
      13 March 2005

    • Laptop biology

      EMBO reports
      1 March 2005

    • Toward data standards for proteomics

      Nature Biotechnology
      1 March 2005

    • Genewindow: an interactive tool for visualization of genomic variation

      Nature Genetics
      1 February 2005

  • Transcriptomics

    • Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression

      Nature Biotechnology
      4 December 2005

    • From XML to RDF: how semantic web technologies will change the design of 'omic' standards

      Nature Biotechnology
      7 September 2005

    • Replication and transcription: Shaping the landscape of the genome

      Nature Reviews Genetics
      10 August 2005

    • Functional Annotation: Extracting functional and regulatory order from microarrays

      Molecular Systems Biology
      25 May 2005

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