Organisms - Bacteria

  • Comparative, evolutionary and population genomics

    • Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale

      Nature Genetics
      5 November 2006

    • Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability

      Molecular Systems Biology
      3 October 2006

    • Protein expression tells only half the story

      Nature Genetics
      1 September 2006

    • Unraveling adaptive evolution: how a single point mutation affects the protein coregulation network

      Nature Genetics
      20 August 2006

    • Evolution of MHC class IIB in the genome of wild and ornamental guppies, Poecilia reticulata

      Heredity
      31 May 2006

  • Genome sequence and analysis

    • Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale

      Nature Genetics
      5 November 2006

    • Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia

      Nature
      1 November 2006

    • Genome sequence of the bioplastic-producing "Knallgas" bacterium Ralstonia eutropha H16

      Nature Biotechnology
      10 September 2006

    • Bottlenecks and broomsticks: the molecular evolution of Mycobacterium bovis

      Nature Reviews Microbiology
      1 September 2006

    • Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

      Nature Biotechnology
      30 July 2006

    • Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila

      Nature Biotechnology
      14 May 2006

    • Deciphering the evolution and metabolism of an anammox bacterium from a community genome

      Nature
      6 April 2006

    • Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

      Molecular Systems Biology
      21 February 2006

    • Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

      Molecular Systems Biology
      21 February 2006

    • Towards multidimensional genome annotation

      Nature Reviews Genetics
      1 February 2006

  • Glycomics

    • Analyzing the dynamic bacterial glycome with a lectin microarray approach

      Nature Chemical Biology
      5 February 2006

  • Metabolomics/nomics

  • Pharmacogenomics

    • A simple recipe for drug interaction networks earns its stars

      Nature Genetics
      1 April 2006

    • Functional classification of drugs by properties of their pairwise interactions

      Nature Genetics
      19 March 2006

  • Proteomics

    • The ciliary proteome database: an integrated community resource for the genetic and functional dissection of cilia

      Nature Genetics
      1 September 2006

    • Protein expression tells only half the story

      Nature Genetics
      1 September 2006

    • Unraveling adaptive evolution: how a single point mutation affects the protein coregulation network

      Nature Genetics
      20 August 2006

    • Flagellar motility is required for the viability of the bloodstream trypanosome

      Nature
      9 March 2006

    • The next chapter in reverse vaccinology

      Nature Biotechnology
      1 February 2006

    • Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome

      Nature Biotechnology
      15 January 2006

  • Systems biology

    • A simple recipe for drug interaction networks earns its stars

      Nature Genetics
      1 April 2006

    • Functional classification of drugs by properties of their pairwise interactions

      Nature Genetics
      19 March 2006

    • Gene network shaping of inherent noise spectra

      Nature
      2 February 2006

    • Where does all this noise come from?

      Nature Reviews Genetics
      1 February 2006

  • Techniques and methods

    • Signature-tagged mutagenesis: barcoding mutants for genome-wide screens

      Nature Reviews Genetics
      1 December 2006

    • A comprehensive library of fluorescent transcriptional reporters for Escherichia coli

      Nature Methods
      21 July 2006

    • Single-cell genomics

      Nature Biotechnology
      1 June 2006

    • Wanting contact: how to pick up a channel

      Nature Chemical Biology
      1 June 2006

    • Sequencing genomes from single cells by polymerase cloning

      Nature Biotechnology
      28 May 2006

    • Direct transfer of membrane proteins from bacteria to planar bilayers for rapid screening by single-channel recording

      Nature Chemical Biology
      7 May 2006

    • Analyzing the dynamic bacterial glycome with a lectin microarray approach

      Nature Chemical Biology
      5 February 2006

    • The next chapter in reverse vaccinology

      Nature Biotechnology
      1 February 2006

    • Literature mining for the biologist: from information retrieval to biological discovery

      Nature Reviews Genetics
      1 February 2006

    • Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome

      Nature Biotechnology
      15 January 2006

    • Microarray data analysis: from disarray to consolidation and consensus

      Nature Reviews Genetics
      1 January 2006

  • Transcriptomics

    • Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability

      Molecular Systems Biology
      3 October 2006

    • Gene network shaping of inherent noise spectra

      Nature
      2 February 2006

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