NPG Library

Below is a selection of recent Research highlights, News and views, Reviews, Perspectives and Research articles published by Nature Publishing Group on the topic of marine microbiology.


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Research highlights

Proteorhodopsins tune in

Sheilagh Molloy

doi:10.1038/nrmicro1686

Nature Reviews Microbiology 5, 396-397 (2007)

Microbial physiology: The power of light

Susan Jones

doi:10.1038/nrmicro1648

Nature Reviews Microbiology 5, 244-245 (2007)

A global marine viral metagenome

Edward Wawrzynczak

doi:10.1038/nrmicro1582

Nature Reviews Microbiology 5, 6-7 (2007)

A global unculture...

David O'Connell

doi:10.1038/nrmicro1435

Nature Reviews Microbiology 4, 418-419 (2006)

Illuminating research

Sheilagh Molloy

doi:10.1038/nrmicro1279

Nature Reviews Microbiology 3, 744 (2005)

Down in the depths

Sheilagh Molloy

doi:10.1038/nrmicro1220

Nature Reviews Microbiology 3, 582 (2005)

Viral genomics: Small is beautiful

David O'Connell

doi:10.1038/nrmicro1196

Nature Reviews Microbiology 3, 520 (2005)

Sediments alive!

Susan Jones

doi:10.1038/nrmicro1135

Nature Reviews Microbiology 3, 274 (2005)


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News and Views

Therapeutic treasures from the deep

David A Hopwood

doi:10.1038/nchembio0807-457

Nature Chemical Biology 3, 457-458 (2007) FREE ACCESS

Genomics: Blueprints for partnerships

David A. Stahl & Seana K. Davidson

doi:10.1038/nature05208

Nature 443, 925-927 (2006) FREE ACCESS

Environmental science: Germ theory for ailing corals

Stephen R. Palumbi

doi:10.1038/434713a

Nature 434, 713-715 (2005) FREE ACCESS


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Reviews

Colorful niches of phototrophic microorganisms shaped by vibrations of the water molecule

Maayke Stomp, Jef Huisman, Lucas J Stal1, and Hans C P Matthijs

doi:10.1038/ismej.2007.59

The ISME Journal 1, 271�282 (2007) FREE ACCESS

The role of microorganisms in coral health, disease and evolution

Eugene Rosenberg, Omry Koren, Leah Reshef, Rotem Efrony & Ilana Zilber-Rosenberg

doi:10.1038/nrmicro1635

Nature Reviews Microbiology 5, 355-362 (2007)

Distribution, diversity and ecology of aerobic CO-oxidizing bacteria

Gary M. King & Carolyn F. Weber

doi:10.1038/nrmicro1595

Nature Reviews Microbiology 5, 107-118 (2007) FREE ACCESS

The versatile epsilon-proteobacteria: key players in sulphidic habitats

Barbara J. Campbell, Annette Summers Engel, Megan L. Porter & Ken Takai

doi:10.1038/nrmicro1414

Nature Reviews Microbiology 4, 458-468 (2006)

Cold-adapted archaea

Ricardo Cavicchioli

doi:10.1038/nrmicro1390

Nature Reviews Microbiology 4, 331-343 (2006)

Marine microorganisms make a meal of oil

Ian M. Head, D. Martin Jones & Wilfred F. M. Röling

doi:10.1038/nrmicro1348

Nature Reviews Microbiology 4, 173-182 (2006)

Metagenomics: DNA sequencing of environmental samples

Susannah Green Tringe & Edward M. Rubin

doi:10.1038/nrg1709

Nature Reviews Genetics 6, 805-814 (2005)

Genomic perspectives in microbial oceanography

Edward F. DeLong & David M. Karl

doi:10.1038/nature04157

Nature 437, 336-342 (2005)

Molecular diversity and ecology of microbial plankton

Stephen J. Giovannoni & Ulrich Stingl

doi:10.1038/nature04158

Nature 437, 343-348 (2005)

Marine microorganisms and global nutrient cycles

Kevin R. Arrigo

doi:10.1038/nature04159

Nature 437, 349-355 (2005)

Predation on prokaryotes in the water column and its ecological implications

Jakob Pernthaler

doi:10.1038/nrmicro1180

Nature Reviews Microbiology 3, 537-546 (2005) FREE ACCESS

Microbial community genomics in the ocean

Edward F. DeLong

doi:10.1038/nrmicro1158

Nature Reviews Microbiology 3, 459-469 (2005) FREE ACCESS


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Perspectives

Developing a new resource for drug discovery: marine actinomycete bacteria

William Fenical & Paul R Jensen

doi:10.1038/nchembio841

Nature Chemical Biology 2, 666-673 (2006)

Viral metagenomics

Robert A. Edwards & Forest Rohwer

doi:10.1038/nrmicro1163

Nature Reviews Microbiology 3, 504-510 (2005) FREE ACCESS


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Research articles

Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes

Dagmar Woebken, Hanno Teeling, Patricia Wecker, Alexandra Dumitriu, Ivaylo Kostadinov, Edward F DeLong, Rudolf Amann and Frank O Gl�ckner

doi:10.1038/ismej.2007.63

The ISME Journal 1, 419�435 (2007) FREE ACCESS

Biological and chemical sulfide oxidation in a Beggiatoa inhabited marine sediment

Andr� Preisler, Dirk de Beer, Anna Lichtschlag, Gaute Lavik, Antje Boetius and Bo Barker J�rgensen

doi:10.1038/ismej.2007.50

The ISME Journal 1, 341�353 (2007) FREE ACCESS

Improvements of high-throughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site

Ulrich Stingl, Harry James Tripp and Stephen J Giovannoni

doi:10.1038/ismej.2007.49

The ISME Journal 1, 361�371 (2007) FREE ACCESS

Is there a cost of virus resistance in marine cyanobacteria?

Jay T Lennon, Sameed Ahmed M Khatana, Marcia F Marston, Jennifer B H Martiny

doi:10.1038/ismej.2007.37

The ISME Journal 1, 300-312 (2007) FREE ACCESS

Synchrony in aquatic microbial community dynamics

Angela D Kent, Anthony C Yannarell, James A Rusak, Eric W Triplett, Katherine D McMahon, Dr KD McMahon

doi:10.1038/nature05381

The ISME Journal 1, 38-47 (2007) FREE ACCESS

Adaptation and spectral tuning in divergent marine proteorhodopsins from the eastern Mediterranean and the Sargasso Seas

Gazalah Sabeh, Benjamin C Kirkup, Mira Rozenberg1, Noga Stambler, Martin F Polz and Oded B�j�

doi:10.1038/ismej.2007.10

The ISME Journal 1, 48-55 (2007) FREE ACCESS

Diazotrophic bacterioplankton in a coral reef lagoon: phylogeny, diel nitrogenase expression and response to phosphate enrichment

Ian Hewson, Pia H Moisander, Amanda E Morrison, Jonathan P Zehr, Dr I Hewson

doi:10.1038/ismej.2007.5

The ISME Journal 1, 78-91 (2007) FREE ACCESS

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria

Laura Gómez-Consarnau, José M. González, Montserrat Coll-Lladó, Pontus Gourdon, Torbjörn Pascher, Richard Neutze, Carlos Pedrós-Alió & Jarone Pinhassi

doi:10.1038/nature05381

Nature 445, 210-213 (2007) FREE ACCESS

Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink

Helge Niemann, Tina Lösekann, Dirk de Beer, Marcus Elvert, Thierry Nadalig, Katrin Knittel, Rudolf Amann, Eberhard J. Sauter, Michael Schlüter, Michael Klages, Jean Paul Foucher & Antje Boetius

doi:10.1038/nature05227

Nature 443, 854-858 (2006)

Symbiosis insights through metagenomic analysis of a microbial consortium

Tanja Woyke, Hanno Teeling, Natalia N. Ivanova, Marcel Huntemann, Michael Richter, Frank Oliver Gloeckner, Dario Boffelli, Iain J. Anderson, Kerrie W. Barry, Harris J. Shapiro, Ernest Szeto, Nikos C. Kyrpides, Marc Mussmann, Rudolf Amann, Claudia Bergin, Caroline Ruehland, Edward M. Rubin & Nicole Dubilier

doi:10.1038/nature05192

Nature 443, 950-955 (2006)

Evidence for complete denitrification in a benthic foraminifer

Nils Risgaard-Petersen, Alexandra M. Langezaal, Signe Ingvardsen, Markus C. Schmid, Mike S. M. Jetten, Huub J. M. Op den Camp, Jan W. M. Derksen, Elisa Piña-Ochoa, Susanne P. Eriksson, Lars Peter Nielsen, Niels Peter Revsbech, Tomas Cedhagen & Gijsbert J. van der Zwaan

doi:10.1038/nature05070

Nature 443, 93-96 (2006)

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

Susanne Schneiker, Vítor AP Martins dos Santos, Daniela Bartels, Thomas Bekel, Martina Brecht, Jens Buhrmester, Tatyana N Chernikova, Renata Denaro, Manuel Ferrer, Christoph Gertler, Alexander Goesmann, Olga V Golyshina, Filip Kaminski, Amit N Khachane, Siegmund Lang, Burkhard Linke, Alice C McHardy, Folker Meyer, Taras Nechitaylo, Alfred Pühler, Daniela Regenhardt, Oliver Rupp, Julia S Sabirova, Werner Selbitschka, Michail M Yakimov, Kenneth N Timmis, Frank-Jörg Vorhölter, Stefan Weidner, Olaf Kaiser & Peter N Golyshin

doi:10.1038/nbt1232

Nature Biotechnology 24, 997-1004 (2006)

Stratified prokaryote network in the oxic–anoxic transition of a deep-sea halocline

Daniele Daffonchio, Sara Borin, Tullio Brusa, Lorenzo Brusetti, Paul W. J. J. van der Wielen, Henk Bolhuis, Michail M. Yakimov, Giuseppe D'Auria, Laura Giuliano, Danielle Marty, Christian Tamburini, Terry J. McGenity, John E. Hallsworth, Andrea M. Sass, Kenneth N. Timmis, Anastasios Tselepides, Gert J. de Lange, Andreas Hübner, John Thomson, Soterios P. Varnavas, Francesco Gasparoni, Hans W. Gerber, Elisa Malinverno, Cesare Corselli & Biodeep Scientific Party

doi:10.1038/nature04418

Nature 440, 203-207 (2006)

An acidic protein aligns magnetosomes along a filamentous structure in magnetotactic bacteria

André Scheffel, Manuela Gruska, Damien Faivre, Alexandros Linaroudis, Jürgen M. Plitzko & Dirk Schüler

doi:10.1038/nature04382

Nature 440, 110-114 (2006)

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

Niels-Ulrik Frigaard, Asuncion Martinez, Tracy J. Mincer & Edward F. DeLong

doi:10.1038/nature04435

Nature 439, 847-850 (2006)

Proteorhodopsin in the ubiquitous marine bacterium SAR11

Stephen J. Giovannoni, Lisa Bibbs, Jang-Cheon Cho, Martha D. Stapels, Russell Desiderio, Kevin L. Vergin, Michael S. Rappé, Samuel Laney, Lawrence J. Wilhelm, H. James Tripp, Eric J. Mathur & Douglas F. Barofsky

doi:10.1038/nature04032

Nature 438, 82-85 (2005)

Photosynthesis genes in marine viruses yield proteins during host infection

Debbie Lindell, Jacob D. Jaffe, Zackary I. Johnson, George M. Church & Sallie W. Chisholm

doi:10.1038/nature04111

Nature 438, 86-89 (2005) FREE ACCESS

Isolation of an autotrophic ammonia-oxidizing marine archaeon

Martin Könneke, Anne E. Bernhard, José R. de la Torre, Christopher B. Walker, John B. Waterbury & David A. Stahl

doi:10.1038/nature03911

Nature 437, 543-546

Deep sub-seafloor prokaryotes stimulated at interfaces over geological time

R. John Parkes, Gordon Webster, Barry A. Cragg, Andrew J. Weightman, Carole J. Newberry, Timothy G. Ferdelman, Jens Kallmeyer, Bo B. Jørgensen, Ivano W. Aiello & John C. Fry

doi:10.1038/nature03796

Nature 436, 390-394 (2005) FREE ACCESS

Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria

Axel Schippers, Lev N. Neretin, Jens Kallmeyer, Timothy G. Ferdelman, Barry A. Cragg, R. John Parkes & Bo B. Jørgensen

doi:10.1038/nature03302

Nature 433, 861-864 (2004)

Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes

Taku Uchiyama, Takashi Abe, Toshimichi Ikemura & Kazuya Watanabe

doi:10.1038/nbt1048

Nature Biotechnology 23, 88-93 (2005)


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Commentary

Metagenomics and the global ocean survey: what's in it for us, and why should we care?

Kenneth H Nealson and J Craig Venter

doi:10.1038/ismej.2007.43

The ISME Journal 1, 185�187 (2007)

Soaking it up: the complex lives of marine sponges and their microbial associates

Michael W Taylor, Russell T Hill, J�rn Piel, Robert W Thacker and Ute Hentschel

doi:10.1038/ismej.2007.32

The ISME Journal 1, 187�190 (2007)

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