Box 1 | Caenorhabditis elegans online information resources

C. elegans II..........................http://www.ncbi.nlm.nih.gov/books/bv.fcgi?call=bv.View..ShowSection&rid=ce2

WormBook..........................http://www.wormbook.org

WormClassroom.....................http://www.wormclassroom.org

WormAtlas..........................http://www.wormatlas.org

WormImage.........................http://www.wormimage.org

WormBase..........................http://www.wormbase.org

WormGenes.........................http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html?worm

RNAiDB.............................http://www.rnai.org

PhenoBank..........................http://www.worm.mpi-cbg.de/phenobank2/cgi-bin/MenuPage.py

C. elegans RNAi Phenome Database..http://omicspace.riken.jp/Ce/rnai/jsp/index.jsp

InteractomeDB.....................http://vidal.dfci.harvard.edu/interactomedb

n-Browse............................http://nematoda.bio.nyu.edu:8080/NBrowse/N-Browse.jsp

WormBase interaction browser......http://www.wormbase.org/db/seq/interaction_viewer

IntAct...............................http://www.ebi.ac.uk/intact/index.jsp

BioGrid.............................http://www.thebiogrid.org

EDGEdb.............................http://edgedb.umassmed.edu

NEXTDB.............................http://nematode.lab.nig.ac.jp/index.html

Hope Laboratory Expression Pattern Database....................http://bgypc059.leeds.ac.uk/~web/databaseintro.htm

BC C. elegans Gene Expression Consortium..............http://elegans.bcgsc.ca/perl/eprofile/index

Stanford Microarray Database.......http://smd.stanford.edu/index.shtml

NCBI Gene Expression Omnibus.....http://www.ncbi.nlm.nih.gov/projects/geo

EBI ArrayExpress....................http://www.ebi.ac.uk/arrayexpress

C. elegans SAGE libraries.............http://tock.bcgsc.bc.ca/cgi-bin/sage170

Structural Genomics of C. elegans....http://sgce.cbse.uab.edu/index.php

Protein Data Bank...................http://www.pdb.org

NCBI PubMed.......................http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed

Textpresso..........................http://www.textpresso.org

WashU GSC.........................http://genome.wustl.edu/genome_group.cgi?GROUP=6

WashU GSC Blast server.............http://genome.wustl.edu/tools/blast

Pristionchus pacificus................http://www.pristionchus.org

Parasitic Nematode Sequencing Project..............................http://www.nematode.net

C. elegans WWW server.............http://elegans.swmed.edu

WormBase Wiki......................http://www.wormbase.org/wiki

Worm Community Forums...........http://www.wormbase.org/forums

Entrez Gene.........................http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene

MapViewer..........................http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=6239

Ensembl.............................http://www.ensembl.org/Caenorhabditis_elegans/index.html

UCSC Genome Browser..............http://genome.ucsc.edu/cgi-bin/hgGateway?hgsid=85966288&clade=worm&org=0&db=0

UniProt..............................http://www.pir.uniprot.org

InParanoid...........................http://inparanoid.sbc.su.se

OrthoMCL..........................http://orthomcl.cbil.upenn.edu

TreeFam.............................http://www.treefam.org

Reactome...........................http://www.reactome.org/cgi-bin/frontpage?DB=gk_current&FOCUS_SPECIES=Caenorhabditis+elegans&.cgifields=MULTISPECIES

MetaCyc............................http://metacyc.org

KEGG...............................http://www.genome.jp/kegg/pathway.html

aMAZE..............................http://www.scmbb.ulb.ac.be/amaze

Gene Ontology......................http://www.geneontology.org/index.shtml

PFam................................http://www.sanger.ac.uk/Software/Pfam

RFam................................http://www.sanger.ac.uk/Software/Rfam

miRBase.............................http://microrna.sanger.ac.uk

NCBI Tools for Data Mining..........http://www.ncbi.nlm.nih.gov/Tools

Toolbox at the EBI...................http://www.ebi.ac.uk/Tools

UniProt Tools........................http://www.pir.uniprot.org/search/tools.shtml

ExPASy Proteomics Tools.............http://www.expasy.org/tools

BC, British Columbia; CGC, Caenorhabditis Genetics Center; EBI, European Bioinformatics Institute; EDGE, C. elegans Differential Gene Expression; ExPASy, Expert Protein Analysis System; KEGG, Kyoto Encyclopaedia of Genes and Genomes; NEXTDB, Nematode Expression Pattern DataBase; NCBI, National Center for Biotechnology Information (USA); SAGE, serial analysis of gene expression; WashU, Washington University; GSC, Genome Sequencing Center.