Protocol abstract
Nature Protocols 1, - 1559 - 1582 (2006)
Published online: 9 November 2006 | doi:10.1038/nprot.2006.236
Subject Categories: Genetic analysis | Nucleic acid based molecular biology
Quantification of mRNA using real-time RT-PCR
Tania Nolan1, Rebecca E Hands2 & Stephen A Bustin2
Abstract
The real-time reverse transcription polymerase chain reaction (RT-qPCR) addresses the evident requirement for quantitative data analysis in molecular medicine, biotechnology, microbiology and diagnostics and has become the method of choice for the quantification of mRNA. Although it is often described as a "gold" standard, it is far from being a standard assay. The significant problems caused by variability of RNA templates, assay designs and protocols, as well as inappropriate data normalization and inconsistent data analysis, are widely known but also widely disregarded. As a first step towards standardization, we describe a series of RT-qPCR protocols that illustrate the essential technical steps required to generate quantitative data that are reliable and reproducible. We would like to emphasize, however, that RT-qPCR data constitute only a snapshot of information regarding the quantity of a given transcript in a cell or tissue. Any assessment of the biological consequences of variable mRNA levels must include additional information regarding regulatory RNAs, protein levels and protein activity. The entire protocol described here, encompassing all stages from initial assay design to reliable qPCR data analysis, requires approximately 15 h.
- Sigma-Aldrich, Homefield Road, Haverhill, UK.
- Institute of Cell and Molecular Science, Barts and the London, Queen Mary's School of Medicine and Dentistry, University of London, Whitechapel, London E1 1BB, UK.
Correspondence to: Stephen A Bustin2 e-mail: s.a.bustin@qmul.ac.uk
nature-products
A-Z product listing
- Tth polymerase(Applied Biosystems)
- 2100 Bioanalyser(Agilent)
- Absolutely RNA kit(Stratagene)
- Brilliant Probe-based RT-qPCR kit(Stratagene)
- Brilliant SYBR Green RT-qPCR kit(Sigma Aldrich)
- CellsDirect RT-qPCR kits(Invitrogen)
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