Review Articles in 2018

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  • This Review Article describes how recent advances in viral genome sequencing and phylogenetics have enabled key issues associated with outbreak epidemiology to be more accurately addressed, and highlights the requirements and challenges for generating, sharing and using such data when tackling a viral outbreak.

    • Nathan D. Grubaugh
    • Jason T. Ladner
    • Kristian G. Andersen
    Review Article
  • This Review discusses the role of the gut, respiratory tract and vaginal microbiota in susceptibility and resistance to infectious diseases.

    • Josie Libertucci
    • Vincent B. Young
    Review Article
  • This Review Article discusses the importance of considering known microbial processes to inform our understanding of the role of microbial communities in ecosystem processes, and a move away from approaches based solely on correlation analyses.

    • Ed K. Hall
    • Emily S. Bernhardt
    • Matthew D. Wallenstein
    Review Article
  • This Review Article discusses the role of bacteriophages in the marine environment, including interactions with their bacterial hosts and their impact on biogeochemical cycling, and a hypothesis to explain successional host–phage dynamics in marine systems.

    • Mya Breitbart
    • Chelsea Bonnain
    • Natalie A. Sawaya
    Review Article
  • This Review Article details various methods that can be used for phylogeny-aware analyses of microbiome datasets, together with online tutorials, including the considerations and challenges of each method depending on the research question.

    • Alex D. Washburne
    • James T. Morton
    • Rob Knight
    Review Article