Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Chemically defined conditions for human iPSC derivation and culture

Abstract

We re-examine the individual components for human embryonic stem cell (ESC) and induced pluripotent stem cell (iPSC) culture and formulate a cell culture system in which all protein reagents for liquid media, attachment surfaces and splitting are chemically defined. A major improvement is the lack of a serum albumin component, as variations in either animal- or human-sourced albumin batches have previously plagued human ESC and iPSC culture with inconsistencies. Using this new medium (E8) and vitronectin-coated surfaces, we demonstrate improved derivation efficiencies of vector-free human iPSCs with an episomal approach. This simplified E8 medium should facilitate both the research use and clinical applications of human ESCs and iPSCs and their derivatives, and should be applicable to other reprogramming methods.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Albumin is not required for human ESC culture.
Figure 2: Essential medium components for human ESC survival and proliferation.
Figure 3: Vitronectin-coated surfaces support human ESCs and iPSCs cultured in E8.
Figure 4: Reprogramming fibroblast cells in fully defined conditions.
Figure 5: Derivation of human iPSCs directly from biopsy samples in chemically defined conditions.

Similar content being viewed by others

References

  1. Thomson, J.A. et al. Embryonic stem cell lines derived from human blastocysts. Science 282, 1145–1147 (1998).

    Article  CAS  Google Scholar 

  2. Reubinoff, B.E., Pera, M.F., Fong, C.Y., Trounson, A. & Bongso, A. Embryonic stem cell lines from human blastocysts: somatic differentiation in vitro. Nat. Biotechnol. 18, 399–404 (2000).

    Article  CAS  Google Scholar 

  3. Yu, J. et al. Induced pluripotent stem cell lines derived from human somatic cells. Science 318, 1917–1920 (2007).

    Article  CAS  Google Scholar 

  4. Takahashi, K. et al. Induction of pluripotent stem cells from adult human fibroblasts by defined factors. Cell 131, 861–872 (2007).

    Article  CAS  Google Scholar 

  5. Park, I.H. et al. Reprogramming of human somatic cells to pluripotency with defined factors. Nature 451, 141–146 (2008).

    Article  CAS  Google Scholar 

  6. Lowry, W.E. et al. Generation of human induced pluripotent stem cells from dermal fibroblasts. Proc. Natl. Acad. Sci. USA 105, 2883–2888 (2008).

    Article  CAS  Google Scholar 

  7. Akopian, V. et al. Comparison of defined culture systems for feeder cell free propagation of human embryonic stem cells. In Vitro Cell. Dev. Biol. Anim. 46, 247–258 (2010).

    Article  Google Scholar 

  8. Sun, N. et al. Feeder-free derivation of induced pluripotent stem cells from adult human adipose stem cells. Proc. Natl. Acad. Sci. USA 106, 15720–15725 (2009).

    Article  CAS  Google Scholar 

  9. Skottman, H. & Hovatta, O. Culture conditions for human embryonic stem cells. Reproduction 132, 691–698 (2006).

    Article  CAS  Google Scholar 

  10. Akopian, V. et al. Comparison of defined culture systems for feeder cell free propagation of human embryonic stem cells. In Vitro Cell Dev. Biol. Anim. 46, 247–258 (2010).

    Article  Google Scholar 

  11. Garcia-Gonzalo, F.R. & Izpisua Belmonte, J.C. Albumin-associated lipids regulate human embryonic stem cell self-renewal. PLoS ONE 3, e1384 (2008).

    Article  Google Scholar 

  12. Watanabe, K. et al. A ROCK inhibitor permits survival of dissociated human embryonic stem cells. Nat. Biotechnol. 25, 681–686 (2007).

    Article  CAS  Google Scholar 

  13. Chen, G., Hou, Z., Gulbranson, D.R. & Thomson, J.A. Actin-myosin contractility is responsible for the reduced viability of dissociated human embryonic stem cells. Cell Stem Cell 7, 240–248 (2010).

    Article  CAS  Google Scholar 

  14. Braam, S.R. et al. Recombinant vitronectin is a functionally defined substrate that supports human embryonic stem cell self-renewal via alphavbeta5 integrin. Stem Cells 26, 2257–2265 (2008).

    Article  CAS  Google Scholar 

  15. Yu, J.Y. et al. Human induced pluripotent stem cells free of vector and transgene sequences. Science 324, 797–801 (2009).

    Article  CAS  Google Scholar 

  16. Howden, S.E. et al. Chromatin-binding regions of EBNA1 protein facilitate the enhanced transfection of Epstein-Barr virus–based vectors. Hum. Gene Ther. 17, 833–844 (2006).

    Article  CAS  Google Scholar 

  17. Assoian, R.K., Frolik, C.A., Roberts, A.B., Miller, D.M. & Sporn, M.B. Transforming growth factor-beta controls receptor levels for epidermal growth factor in NRK fibroblasts. Cell 36, 35–41 (1984).

    Article  CAS  Google Scholar 

  18. Roberts, A.B. et al. Type beta transforming growth factor: a bifunctional regulator of cellular growth. Proc. Natl. Acad. Sci. USA 82, 119–123 (1985).

    Article  CAS  Google Scholar 

  19. Lin, T. et al. A chemical platform for improved induction of human iPSCs. Nat. Methods 6, 805–808 (2009).

    Article  CAS  Google Scholar 

  20. Liang, G., Taranova, O., Xia, K. & Zhang, Y. Butyrate promotes induced pluripotent stem cell generation. J. Biol. Chem. 285, 25516–25521 (2010).

    Article  CAS  Google Scholar 

  21. Mali, P. et al. Butyrate greatly enhances derivation of human induced pluripotent stem cells by promoting epigenetic remodeling and the expression of pluripotency-associated genes. Stem Cells 28, 713–720 (2010).

    Article  CAS  Google Scholar 

  22. Ware, C.B. et al. Histone deacetylase inhibition elicits an evolutionarily conserved self-renewal program in embryonic stem cells. Cell Stem Cell 4, 359–369 (2009).

    Article  CAS  Google Scholar 

  23. Rothschild, M.A., Oratz, M. & Schreiber, S.S. Regulation of albumin metabolism. Annu. Rev. Med. 26, 91–104 (1975).

    Article  CAS  Google Scholar 

  24. Oshima, R. Stimulation of the clonal growth and differentiation of feeder layer dependent mouse embryonal carcinoma cells by beta-mercaptoethanol. Differentiation 11, 149–155 (1978).

    Article  CAS  Google Scholar 

  25. Martin, G.R. Isolation of a pluripotent cell line from early mouse embryos cultured in medium conditioned by teratocarcinoma stem cells. Proc. Natl. Acad. Sci. USA 78, 7634–7638 (1981).

    Article  CAS  Google Scholar 

  26. Xu, Y. et al. Revealing a core signaling regulatory mechanism for pluripotent stem cell survival and self-renewal by small molecules. Proc. Natl. Acad. Sci. USA 107, 8129–8134 (2010).

    Article  CAS  Google Scholar 

  27. Esteban, M.A. et al. Vitamin C enhances the generation of mouse and human induced pluripotent stem cells. Cell Stem Cell 6, 71–79 (2010).

    Article  CAS  Google Scholar 

  28. Chung, T.L. et al. Vitamin C promotes widespread yet specific DNA demethylation of the epigenome in human embryonic stem cells. Stem Cells 28, 1848–1855 (2010).

    Article  CAS  Google Scholar 

  29. Yu, J.Y. et al. Induced pluripotent stem cell lines derived from human somatic cells. Science 318, 1917–1920 (2007).

    Article  CAS  Google Scholar 

  30. Seiffert, D. & Loskutoff, D.J. Evidence that type 1 plasminogen activator inhibitor binds to the somatomedin B domain of vitronectin. J. Biol. Chem. 266, 2824–2830 (1991).

    CAS  PubMed  Google Scholar 

  31. Hayman, E.G., Pierschbacher, M.D., Ohgren, Y. & Ruoslahti, E. Serum spreading factor (vitronectin) is present at the cell surface and in tissues. Proc. Natl. Acad. Sci. USA 80, 4003–4007 (1983).

    Article  CAS  Google Scholar 

  32. Ludwig, T.E. et al. Feeder-independent culture of human embryonic stem cells. Nat. Methods 3, 637–646 (2006).

    Article  CAS  Google Scholar 

  33. Wojciechowski, K., Chang, C.H. & Hocking, D.C. Expression, production, and characterization of full-length vitronectin in Escherichia coli. Protein Expr. Purif. 36, 131–138 (2004).

    Article  CAS  Google Scholar 

  34. Sengupta, S. et al. Highly consistent, fully representative mRNA-Seq libraries from ten nanograms of total RNA. Biotechniques 49, 898–904 (2010).

    Article  CAS  Google Scholar 

  35. Li, B., Ruotti, V., Stewart, R.M., Thomson, J.A. & Dewey, C.N. RNA-Seq gene expression estimation with read mapping uncertainty. Bioinformatics 26, 493–500 (2010).

    Article  Google Scholar 

Download references

Acknowledgements

This work was supported by The Charlotte Geyer Foundation, the Morgridge Institute for Research, US National Institutes of Health grant UO1ES017166 (to J.A.T.) and National Institutes of Health contract RR-05-19 (to J.A.T.). We thank K. Eastman for editorial assistance, and C. Dewey, R. Stewart and A. Elwell for their assistance with gene expression analysis.

Author information

Authors and Affiliations

Authors

Contributions

G.C. and J.A.T. conceived the experiment; G.C., D.R.G., J.M.B., K.S.-O. and S.E.H. performed the reprogramming; Z.H., G.C. and N.E.P. produced vitronectin; G.C., D.R.G., J.M.B., N.R.D., G.O.L. and J.A.-B. performed the cell culture test; G.C., M.D.P. and R.W. derived fibroblasts; J.M.C.T. obtained the skin biopsy; V.R. and G.C. analyzed global expression; and G.C. and J.A.T. wrote the paper.

Corresponding author

Correspondence to James A Thomson.

Ethics declarations

Competing interests

J.A.T. is a founder, stockowner, consultant and board member of Cellular Dynamics International (CDI), and serves as scientific advisor to and has financial interests in Tactics II Stem Cell Ventures.

Supplementary information

Supplementary Text and Figures

Supplementary Figures 1–4 and Supplementary Tables 1–3 (PDF 6386 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Chen, G., Gulbranson, D., Hou, Z. et al. Chemically defined conditions for human iPSC derivation and culture. Nat Methods 8, 424–429 (2011). https://doi.org/10.1038/nmeth.1593

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nmeth.1593

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing