Supplementary information

From the following article

A 3D digital atlas of C. elegans and its application to single-cell analyses

Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K Kim & Eugene Myers

Nature Methods 6, 667 - 672 (2009) Published online: 16 August 2009

doi:10.1038/nmeth.1366

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Supplementary Text and Figures

Supplementary Figures 1–6, Supplementary Table 1 and Supplementary Note

Supplementary Video 1

Three-dimensional images before and after worm body straightening, and its segmentation result.

Supplementary Video 2

Three-dimensional point-cloud rendering of the nuclei of 357 cells in L1 hermaphrodites larvae.

Supplementary Video 3

A tutorial movie showing how to use V3D software to view the 3D digital atlas and interactively access/edit the content of individual nuclei annotation.

Supplementary Data 1

3D digital atlas of L1 represented as a point cloud.

Supplementary Data 2

CellExplorer software package, which also contains the sample data set. This software package can straighten worm stacks, segment nuclei, automatically annotate nuclei names and perform related analysis. Read the README file inside this package for further instructions.

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Flash movies

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Chemical structures

Microarray

Compressed Stuff files

Compressed Zip files

Systems Biology Markup Language files (SBML)

Chemical Markup language files (CML)

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