Nature Methods 3, 511 - 518 (2006)
Published online: 21 June 2006; | doi:10.1038/nmeth890
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarraysPeter J Sabo, Michael S Kuehn, Robert Thurman, Brett E Johnson, Ericka M Johnson, Hua Cao, Man Yu, Elizabeth Rosenzweig, Jeff Goldy, Andrew Haydock, Molly Weaver, Anthony Shafer, Kristin Lee, Fidencio Neri, Richard Humbert, Michael A Singer, Todd A Richmond, Michael O Dorschner, Michael McArthur, Michael Hawrylycz, Roland D Green, Patrick A Navas, William S Noble
& John A Stamatoyannopoulos Supplementary Fig. 1 (pdf 32K)
Reproducibility of DNase-array. Supplementary Fig. 2 (pdf 3,111K)
Conventional validation of DNase-array. Supplementary Table 1 (pdf 227K)
Shown are location (chromosome, position) of 2,690 DHSs and distance of each to 5' and 3' ends of the nearest known gene, mRNA, and spliced EST from the UCSC database. Supplementary Table 2 (pdf 117K)
Comparison of DNase-array and conventional Southern validation assays. Supplementary Table 3 (pdf 54K)
Primer sequences referred to in Methods and Supplementary Methods. Supplementary Methods (pdf 105K)
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