Introduction
T cell development proceeds through discrete stages defined on the basis of the configuration of the loci of genes encoding T cell antigen receptors (TCRs) and the expression of CD4 and CD8 molecules. Immature double-negative (DN) CD4-
CD8-
thymocytes that successfully express a TCR
chain develop into double-positive (DP) CD4+CD8+ cells that undergo TCR
gene rearrangements. A few DP cells expressing 
TCR capable of low-affinity interactions with self peptides bound to major histocompatibility complex (MHC) molecules mature into single-positive (SP) CD4+CD8-
or CD4-
CD8+ cells, a transition known as 'positive selection'. DP cells that fail to respond to any self peptide–MHC (self-pMHC) complexes die of neglect, whereas DP and SP cells expressing TCRs that interact with high affinity with self-pMHC complexes are deleted through apoptosis1.
Dedicated post-transcriptional mechanisms that are independent of TCR-pMHC interactions decrease TCR expression on the surface of DP cells2, 3. For example, interactions between CD4 molecules expressed on DP cells and MHC class II molecules expressed on cortical thymic epithelial cells activate the Src-family kinase Lck (A001394) and initiate a signaling cascade that involves phosphorylation of the CD3
subunit of the TCR complex that results in the recruitment of Src-like adaptor protein (SLAP; A002843)4, 5, 6, 7, 8, 9, 10, 11, 12. SLAP recruited to the TCR complexes on DP cells interacts with the E3 ubiquitin ligase c-Cbl and thereby targets phosphorylated CD3
chains present in fully assembled TCR for degradation3, 12, 13, 14, 15. As a consequence, fewer TCR complexes recycle back to the surface and a major phase of TCR repertoire selection occurs in thymocytes on which TCR expression is only one tenth the amount on mature T cells16. Positive selection relieves the mechanisms responsible for TCR downregulation and leads to SP cells that express amounts of TCR identical to those on mature T cells. Coincidently, the TCRs expressed on maturing SP cells lose the ability to respond to weak agonists, whereas sensitivity to strong agonists is maintained17, 18, 19, 20. Such ligand-selective reduction in TCR sensitivity is thought to provide a 'safety window' that prevents peripheral T cells from acquiring effector function after re-encountering their selecting self-pMHC ligands.
Antigen-binding 
TCR heterodimers are noncovalently associated with CD3
, CD3
and CD3
pairs. Each CD3 subunit contains one or several copies of a conserved sequence known as an 'immunoreceptor tyrosine-based activation motif' (ITAM). How information is transferred from TCR-pMHC complexes to the CD3 signaling subunits remains controversial. One model postulates that pMHC recognition triggers a conformational change in the TCR-CD3 complex that 'unmasks' an evolutionary conserved proline-rich sequence (PRS) present in the cytosolic segment of CD3
(A000550)21, 22. In support of that model, engagement of the TCR by pMHC ligands and certain antibodies enables binding of the CD3
PRS to the adaptor protein Nck (A000113) or to the CD3
PRS–specific antibody APA1/1 before and independently of the tyrosine-phosphorylation events associated with TCR signal transduction23.
Studies of transgenic mice expressing retrovirus-expressed CD3
subunits with deletion of the PRS have shown that these mice have normal T cell development and function24; however, the possible presence of a skewed polyclonal repertoire of TCRs in these mice and the inability to study the function of the CD3
PRS during antigen-specific T cell responses led us to develop 'knock-in' mice in which the sequence encoding the PRS was deleted from the endogenous gene encoding CD3
(Cd3e). Studies of mice with deletion of the PRS (called 'Cd3e
PRS/
PRS mice' here) crossed with TCR-transgenic mice showed that the CD3
PRS had no effect on the responsiveness of T cells to antigenic pMHC; thymocytes with deletion of the PRS had enhanced TCR expression on the surface of DP cells because they had less SLAP-dependent degradation of CD3
, and the CD3
PRS was required for the heightened sensitivity of DP cells to weak self-pMHC ligands. Moreover we found that the CD3
PRS in wild-type TCR complexes (unoccupied by pMHC) was accessible to binding to the adaptor Nck, contrary to results from previous studies.
Results
Generation of Cd3e
PRS/
PRS mice
To address the importance of the nonredundant CD3
PRS in vivo without changing the position of the CD3
ITAM sequence relative to the plane of the plasma membrane in which CD3
and TCR are expressed, we replaced the RPPPVPNP sequence with the ASREKADA sequence that occupies an analogous position in the cytoplasmic tail of Fc
RI
, another ITAM-containing subunit used by immunoreceptors (Supplementary Fig. 1 online). We derived 'knock-in' mice with the intended Cd3e
PRS mutation from Bruce-4 C57BL/6 embryonic stem cells; homozygous Cd3e
PRS/
PRS mice were born at the expected frequencies and were healthy and fertile (Supplementary Fig. 2 online). Although contiguous to the CD3
ITAM, the substituted sequence did not affect ITAM tyrosine phosphorylation after TCR ligation; we confirmed this by studying the signaling properties of CD25-based chimeric molecules (Supplementary Fig. 3 online).
Analysis of Cd3e
PRS/
PRS thymi showed they had a normal representation of DN, DP and SP subsets and a 30% decrease in cellularity (Fig. 1a and Supplementary Table 1 online). The frequency and absolute numbers of DN4 (CD44-
CD25-
) cells were diminished in Cd3e
PRS/
PRS thymi (Fig. 1b), which suggested that the Cd3e
PRS mutation resulted in less TCR
selection. The expression of CD3
and TCR
on the surface of Cd3e
PRS/
PRS thymocytes was upregulated in a stage-specific way restricted to DP cells (Fig. 1c), and normal amounts of TCR-CD3 complexes were present on the surface of SP thymocytes (Fig. 1c). Cd3e
PRS/
PRS DP thymocytes expressed normal amounts of CD4, CD8, CD69 and CD25 and slightly more CD5 and CD44 (Fig. 1c and data not shown). Spleen and lymph nodes of Cd3e
PRS/
PRS mice had normal numbers of T cells (Fig. 1d,e, Supplementary Table 1 and data not shown); the variable
-region repertoire used by mature T cells present in Cd3e
PRS/
PRS mice showed no detectable alteration; and normal numbers of 
T cells expressing normal surface amounts of TCR were present (Supplementary Figs. 4 and 5 online). Therefore, the Cd3e
PRS mutation had a limited effect on the development of T cells expressing polyclonal TCR repertoire.
Figure 1: Higher TCR expression on DP thymocytes from Cd3e
PRS/
PRS mice.
Flow cytometry of wild-type (WT) and Cd3e
PRS/
PRS (
PRS/
PRS) thymocytes and splenocytes. (a) Expression of CD4 and CD8 on thymocytes. Numbers in outlined areas indicate percent DN cells (bottom left), DP cells (top right), CD4+ SP cells (top left) and CD8+ SP cells (bottom right). (b) Expression of CD44 and CD25 expression on purified TCR
-
DN thymocytes. Numbers in outlined areas indicate percent DN2 plus DN3 cells (right) or DN4 cells (left). (c) Expression of TCR
, CD3
, CD5 and CD44 on DP, CD4+ SP and CD8+ SP thymocytes from wild-type mice (gray filled histograms) and Cd3e
PRS/
PRS mice (solid lines). Dotted lines, isotype control staining. Numbers at top indicate geometric mean fluorescence of cells from wild-type mice (left) and Cd3e
PRS/
PRS mice (right). (d) Expression of CD4 and CD8 on splenocytes. Numbers in outlined areas indicate percent CD4+ cells (top left) and CD8+ cells (bottom right). (e) Expression of TCR
, CD3
, CD5 and CD44 on CD4+ and CD8+ splenocytes from wild-type mice (gray filled histograms) and Cd3e
PRS/
PRS mice (solid lines). Data are representative of at least three independent experiments.
The Cd3e
PRS mutation abrogates Nck docking
To demonstrate that the ASREKADA sequence expressed by CD3
PRS subunits prevented their interaction with the Nck Src homology 3.1 (Nck-SH3.1) domain, we incubated thymocytes from wild-type and Cd3e
PRS/
PRS mice in the presence or absence of antibodies to CD3
. We then prepared cell lysates, precipitated proteins with beads coupled to fusion proteins of glutathione S-transferase and Nck-SH3.1 (GST–Nck-SH3.1) and assessed the presence of bound, fully assembled TCR-CD3 complexes by immunoblot analysis with antibody to CD3
(anti-CD3
; Fig. 2a). In contrast to wild-type TCR complexes, those containing CD3
PRS subunits did not bind to the Nck-SH3.1 domain, which confirmed that the interaction between Nck-SH3.1 and CD3
required an intact PPVPNPDY segment23, 25. Unexpectedly, we found interaction between wild-type TCR complexes and the Nck-SH3.1 domain in freshly isolated thymocytes, and stimulation with anti-CD3
resulted in a 1.2- to 1.5-fold gain over the amount in the basal state (Fig. 2a). To demonstrate that TCR-CD3 complexes expressed on the cell surface were detected by GST–Nck-SH3.1 beads, we biotinylated freshly isolated thymocytes and then precipitated proteins in total cell lysates with GST–Nck-SH3.1 beads. All the CD3 subunits of the TCR could be detected before and after stimulation with anti-CD3
(Fig. 2b and data not shown), which indicated that TCR complexes present on the surface of wild-type thymocytes contained CD3
PRS that constitutively bound Nck.
Figure 2: The Cd3e
PRS mutation abrogates Nck docking.
Analysis of wild-type and Cd3e
PRS/
PRS thymocytes left untreated (UT) or incubated for 5 min (a,b) or for 10 or 30 min (c,d) at 37 °C with anti-CD3
(
-CD3). (a) Precipitation of lysates with GST and GST–Nck-SH3.1 (SH3) beads and immunoblot (IB) analysis with anti-CD3
(
-CD3
) or anti-
-tubulin. kDa, kilodaltons. (b) Precipitation of lysates of unbiotinylated or surface-biotinylated wild-type thymocytes with GST or GST–Nck-SH3.1 (SH3) beads, followed by immunoblot analysis. IP (middle lane), immunoprecipitation of a lysate aliquot with anti-CD3
(shorter exposure time). Below, membranes striped and reprobed with anti-CD3
or anti-
-tubulin. (c) Flow cytometry of the expression of surface CD3
and intracellular APA1/1 staining in DP thymocytes. Dotted lines, isotype control. (d) Quantification of the data in c, presented as the geometric mean of CD3
surface expression or APA1/1 intracytoplasmic staining. Below, duration and temperature of incubation with anti-CD3
. Data are representative of at least two independent experiments.
To confirm the results reported above, we used the APA1/1 antibody26, 27 reported before to detect the CD3
PRS in T cells after TCR ligation. Freshly isolated, wild-type DP thymocytes showed unimodal APA1/1 staining identical to the staining in wild-type DP cells stimulated with anti-CD3 (Fig. 2c,d), which suggested that the accessibility of the CD3
PRS is not limited to the DP cells that express TCRs in the process of recognizing self-pMHC complexes28. In addition, wild-type thymocytes cultured in suspension for 8 h at 37 °C to prevent interaction of TCRs with MHC molecules5 showed APA1/1 staining similar to that of freshly isolated wild-type thymocytes, and MHC class II–restricted DP cells in MHC class II–sufficient or MHC class II–deficient thymic environments showed similar APA1/1 staining (Supplementary Fig. 6 online). Thus, the CD3
PRS component of TCR complexes expressed on the surface of DP thymocytes is constitutively accessible to the Nck-SH3.1 domain independently of TCR-pMHC engagement.
TCR internalization and recycling in Cd3e
PRS/
PRS cells
To investigate the mechanism of CD3
PRS–mediated TCR downregulation, we measured the kinetics of TCR cycling on DP thymocytes. First we found that Cd3e
PRS/
PRS DP thymocytes internalized surface-bound anti-CD3
and anti-TCR
with kinetics similar to those of wild-type thymocytes (Fig. 3a,b and data not shown). Next we incubated thymocytes with phycoerythrin-labeled anti-CD3
either on ice, to measure surface TCR-CD3 complexes, or at 37 °C, to measure the 'cycling pool' that corresponds to surface, internalized and recycled TCR complexes. Although the cycling pool of Cd3e
PRS/
PRS DP cells was approximately 2.5-fold larger than that in wild-type DP cells, the cycling pool/surface pool ratio was similar in Cd3e
PRS/
PRS DP thymocytes (2.4
0.2) and wild-type DP thymocytes (2.3
0.2; data not shown and Fig. 3c,d). Therefore, the lack of CD3
PRS resulted in larger surface TCR pools and intracellular cycling TCR pools in DP cells. Notably, the cell surface expression and cycling pools of TCR in CD4+ SP cells from wild-type and Cd3e
PRS/
PRS thymi were similar (Fig. 3c,d).
Figure 3: TCR internalization and recycling in Cd3e
PRS/
PRS DP thymocytes.
(a,b) Antibody-induced internalization of CD3
in wild-type (filled circles) and Cd3e
PRS/
PRS (open circles) DP thymocytes. (a) Cell surface CD3
, presented as the geometric mean of the fluorescence intensity. (b) Normalization of the data in a relative to CD3
expressed at time 0 (initial). (c) Flow cytometry of wild-type (gray filled histograms) and Cd3e
PRS/
PRS (solid lines) DP and CD4+ SP thymocytes incubated with anti-CD3
for 60 min at 0 °C or at 37 °C to allow labeling of surface pools and cycling plus surface pools of TCR, respectively. Dotted lines, isotype control staining. (d) Quantification of the data in c, presented as the geometric mean (and s.e.m.) of CD3
expression relative to that in wild-type thymocytes. (e,f) Recycling of TCR-CD3 in wild-type (filled circles) and Cd3e
PRS/
PRS (open circles) DP thymocytes incubated for 0–6 h in normal medium (dotted lines) or in hypertonic medium in the presence (dashed lines) or absence (solid lines) of cycloheximide. (e) CD3
expressed at the cell surface. (f) Normalization of the data in e relative to CD3
expressed at time 0 (initial). Data are representative of at least two independent experiments.
By blocking TCR-CD3 internalization and protein synthesis with hypertonic medium and cycloheximide, respectively, the number of CD3
molecules present in the intracellular cycling pool can be determined12. With this assay we found that wild-type and Cd3e
PRS/
PRS DP thymocytes had similar kinetics of CD3
expression (Fig. 3e,f) and that more CD3
molecules recycled back to the surface in the absence of CD3
PRS, consistent with a larger intracellular cycling pool of CD3
(Fig. 3c,d). Notably, the larger TCR-CD3 cycling pool in Cd3e
PRS/
PRS DP thymocytes did not result from more synthesis of TCR components. Therefore neither more neosynthesis nor a substantial alteration in constitutive CD3
internalization and recycling seems to account for the higher TCR-CD3 expression on the surface of Cd3e
PRS/
PRS DP thymocytes.
Convergent functions of the CD3
PRS and of SLAP
Analysis of mice deficient in SLAP (Sla-
/-
mice) has shown that this adaptor downregulates TCR expression on DP thymocytes3, 12, 13, 14, 15. To determine whether SLAP and the CD3
PRS act together to decrease TCRs on the surface of DP cells, we analyzed DP thymocytes in conditions in which CD4–MHC class II interactions that 'trigger' the SLAP-based degradation mechanism were ablated. As described before4, 5, 6, wild-type DP cells cultured at 37 °C in the absence of MHC class II–positive thymic stroma had a considerable increase in the expression of TCR at the cell surface (Fig. 4a); in contrast, Cd3e
PRS/
PRS DP thymocytes showed only a modest increase in their already high expression of TCR. When we used the MHC class II–negative Tst-4–DL1 stromal cell line29 to support in vitro T cell differentiation, we found no additive effect on TCR-CD3 expression on Cd3e
PRS/
PRS DP cells (Fig. 4b and Supplementary Fig. 7 online). Reconstitution of recipient mice sufficient or deficient in MHC class II molecules with bone marrow from wild-type or Cd3e
PRS/
PRS mice showed that the simultaneous disruption of CD4–MHC class II interactions and of the CD3
PRS had no additive effect on the amount of TCR expressed on Cd3e
PRS/
PRS DP cells (Fig. 4c).
Figure 4: The MHC class II–CD4–Lck–SLAP pathway and CD3
PRS act together to downregulate 
TCR expression on DP cells.
(a) Flow cytometry of the surface expression of TCR
on wild-type (gray filled histograms) or Cd3e
PRS/
PRS (solid lines) DP thymocytes incubated for 12 h at 4 °C (left) or 37 °C (right). (b) TCR
expression on freshly isolated wild-type (gray filled histograms) or Cd3e
PRS/
PRS (solid lines) DP thymocytes (left) and on in vitro–produced DP thymocytes generated from wild-type (gray filled histograms) or Cd3e
PRS/
PRS (solid lines) DN thymocytes cultured for 4 d with the MHC class II–negative Tst-4–DL-1 stromal cells (right). (c) Flow cytometry of cell surface expression of HY TCR on DP thymocytes from female Cd3e
5/
5 mice sufficient (left) or deficient (right) in MHC class II molecules 10 weeks after reconstitution with bone marrow cells from wild-type (gray filled histograms) or Cd3e
PRS/
PRS (solid lines) HY TCR-transgenic mice. Below plots (a–c), geometric mean of TCR normalized to those noted for DP thymocytes expressing wild-type CD3
subunits and developing in a MHC class II–sufficient environment (to facilitate comparison of TCR expressed in the various conditions). Dotted lines (a–c), isotype control staining. (d) Expression of TCR
and CD3
subunits on the surface of DP cells (mouse genotypes, keys). Right two panels, Cd3e
PRS/
PRS and Sla-
/-
histograms overlaid on those corresponding to Cd3e
PRS/
PRSSla-
/-
and Cd3e
PRS/+Sla-
/+ DP cells. Data are representative of two independent experiments.
Next we directly compared the amount of TCR-CD3 expressed by thymocytes deprived of either CD3
PRS or SLAP. As reported before3, 13, TCR
and CD3
expression was approximately three- to fourfold higher on Sla-
/-
DP cells than on wild-type DP cells, a result also noted on Cd3e
PRS/
PRS DP thymocytes (Fig. 4d). DP cells deprived of both the CD3
PRS and SLAP had slightly more surface TCR than did DP cells deprived of either the CD3
PRS or SLAP. These data indicate that both the CD3
PRS and SLAP are required for efficient control of the amount of TCR expressed on DP cells, a conclusion supported by additional analyses of single- or compound-heterozygous mice that showed a distinct 'gene-dosage' effect (Fig. 4d).
Because SLAP regulates TCR expression on DP cells by targeting CD3
chains for degradation, we analyzed whether the CD3
PRS also participates in CD3
degradation. By evaluating total CD3
by immunoblot analysis and intracellular flow cytometry (Fig. 5a,b), we found that Cd3e
PRS/
PRS DP thymocytes had approximately twofold more CD3
than did wild-type DP cells. In contrast, total amounts of TCR
and CD3
chains were, if anything, only slightly greater in the absence of CD3
PRS (Supplementary Fig. 8 online). To evaluate directly the efficiency of CD3
degradation in the absence of CD3
PRS, we incubated total thymocytes with cycloheximide and monitored CD3
expression over time. In contrast to wild-type thymocytes, Cd3e
PRS/
PRS and Sla-
/-
thymocytes failed to degrade CD3
during the 8-hour assay (Fig. 5c,d). When we analyzed degradation of TCR
and CD3
in parallel, we found no impairment in the absence of CD3
PRS or of SLAP (Fig. 5e). Therefore, both SLAP and the CD3
PRS are required for TCR downregulation through degradation of CD3
.
Figure 5: The CD3
PRS and SLAP regulate CD3
degradation in DP thymocytes.
(a) Immunoblot (left) of wild-type and Cd3e
PRS/
PRS whole-cell lysates (corresponding to 5.0
106, 2.5
106 and 1.3
106 thymocytes; above lanes) with anti-CD3
;
-tubulin, loading control. Right, quantification of the immunoblot at left. (b) Flow cytometry of intracellular CD3
in DP and CD4+ T cells. Dotted lines, isotype control staining. Numbers in left plot indicate the geometric mean fluorescence of cells from wild-type mice (left) and Cd3e
PRS/
PRS mice (right). (c) Immunoblot analysis of CD3
in thymocytes (genotype, above blot) incubated in the presence of cycloheximide (time, above lanes).
-tubulin, loading control; AU, arbitrary luminescence units. (d) Quantification of the immunoblots in c by luminescence, presented as CD3
expression relative to expression at time 0 (initial). (e) Flow cytometry of intracellular expression of TCR
and CD3
in DP thymocytes in the presence of cycloheximide, presented relative to expression at time 0 (initial). Data are representative of at least three independent experiments.
Effect on thymic selection
The absence of SLAP improves the positive selection of DO11.10 TCR-transgenic thymocytes, an effect assigned to the larger amount of TCRs present on the DP thymocytes3. To analyze whether the Cd3e
PRS mutation had a similar effect on intrathymic selection, we backcrossed HY and Marilyn TCR-transgenic mice, models that permit an analysis of positive and negative selection among the same littermates30, 31, with Cd3e
PRS/
PRS mice. In the presence of CD3
PRS, we noted higher expression of the HY and Marilyn TCRs on DP cells, as detected with monoclonal antibody T3.70 (specific for the HY TCR) and by expression of V
6, respectively (Fig. 6a,b and data not shown), results that recapitulated our earlier results with mice expressing a polyclonal TCR repertoire (Fig. 1c) and reinforced the view that the CD3
PRS regulates TCR in a stage-specific way. Despite the twofold more DP cells in HY-Cd3e
PRS/
PRS female mice, their thymi contained 35% fewer CD8+ SP cells (Fig. 6a and Supplementary Table 2 online), consistent with less positive selection. We also noted much higher CD44 expression on all HY-Cd3e
PRS/
PRS thymocytes (Fig. 6b), a finding similar to that obtained with Cd3e
PRS/
PRS mice (Fig. 1c) and whose importance remains to be determined. Consistent with the lower positive selection in HY-Cd3e
PRS/
PRS female thymi, T3.70+CD8+ splenocyte numbers were four- to sevenfold greater in spleens from female wild-type HY mice (2.9
106
0.8
106; n = 4 mice) than in spleens from female HY-Cd3e
PRS/
PRS mice (0.6
106
0.2
106; n = 11 mice; Fig. 6c). Because of premature expression of the HY TCR transgene, most of the developing thymocytes in male HY mice are deleted before or at the transition to the DP stage32, resulting in much lower thymic cellularity and depletion of most T3.70+ DP and SP cells; in contrast, thymi from male HY-Cd3e
PRS/
PRS mice had 1.3-fold more cellularity that resulted from the reappearance of T3.70+ DP cells and CD4loCD8lo cells (Supplementary Fig. 9 and Supplementary Table 2 online). Comparison of the expression of TCR-CD3 on the few DP cells in thymi from male HY-Cd3e
PRS/
PRS and HY mice confirmed that the Cd3e
PRS mutation resulted in more TCR-CD3 on DP cells. Because none of the few T3.70+ DP cells in thymi from male HY-Cd3e
PRS/
PRS mice transitioned to the T3.70hiCD8hi SP stage, HY-Cd3e
PRS/
PRS male mice lacked peripheral T3.70hiCD8hi T cells (Supplementary Fig. 9). Therefore, in thymi from male HY-Cd3e
PRS/
PRS mice, although negative selection of conventional 
T cells occurred, it did so with protracted kinetics. Analysis of the progeny of Marilyn female and male recombination-activating gene–deficient mice crossed with Cd3e
PRS/
PRS mice showed they had normal negative selection, whereas there was less positive selection, which resulted in 50–70% fewer clonotype-positive CD4+ splenocytes (Supplementary Fig. 10 online). These data collectively show that elimination of the CD3
PRS had no net effect on negative selection, whereas positive selection was lower in both Marilyn and HY-Cd3e
PRS/
PRS DP cells.
Figure 6: Impeded positive selection in Cd3e
PRS/
PRS mice expressing the HY transgenic TCR.
(a–c) Flow cytometry of cells from female mice expressing the HY transgenic TCR on the wild-type and Cd3e
PRS/
PRS background. (a) Expression of CD4 and CD8 on total thymocytes. Numbers in plots indicate percent cells in outlined windows. (b) Expression of T3.70, CD3
, CD5 and CD44 on DP, DN and CD8+ SP thymocytes from wild-type mice (gray filled histograms) and Cd3e
PRS/
PRS mice (solid lines). Dotted lines, isotype control staining. Numbers in top row indicate the geometric mean fluorescence of cells from wild-type mice (left) and Cd3e
PRS/
PRS mice (right). (c) Expression of CD8 and T3.70 on total splenocytes. Numbers above outlined areas indicate percent T3.70hiCD8hi cells. (d) Flow cytometry of the expression of CD8 and T3.70 on total splenocytes from Cd3e
5/
5 female mice sufficient (+/+) or deficient (
/
) in MHC class II molecules 10 weeks after reconstitution with bone marrow cells isolated from wild-type and Cd3e
PRS/
PRS mice expressing the HY TCR. Numbers above outlined areas indicate percent T3.70+CD8+ T cells. Data are representative of at least three independent experiments.
Finally, the mature T cells in the periphery of HY and Marilyn female mice expressing wild-type or mutant CD3
subunits had similar amounts of TCR
, CD3
, CD5, CD69, CD25 and CD44 (data not shown). Wild-type or CD4+ (Marilyn) T cells and CD8+ (HY) T cells expressing wild-type CD3
or CD3
PRS showed similar dose-response curves and identical proliferative responses (Supplementary Fig. 11 online and data not shown). Therefore, the CD3
PRS has no detectable function in antigen-driven activation of CD4+ and CD8+ T cells.
Divergent functions of the CD3
PRS and SLAP
The divergent effects of deficiency in SLAP or the CD3
PRS on positive selection may have resulted from different properties of the TCR-transgenic models (DO11.10 versus Marilyn and HY models). For example, the affinities in the Marilyn and HY TCRs might be near the threshold that distinguishes positive from negative selection and any increase in their density might convert positive selection into negative selection. It was thus important to test whether the CD3
PRS contributed to TCR signaling in DP cells regardless of its effect on TCR density. Given that the SLAP degradation pathway can be deactivated through elimination of MHC class II and that MHC class I–restricted HY T cells develop in the absence of MHC class II, we created bone marrow chimeras in which DP cells expressed HY TCR and wild-type CD3
in amounts similar to those found on Cd3e
PRS/
PRS DP cells. We sublethally irradiated MHC class II–sufficient mice and MHC class II–deficient recipient mice and reconstituted then with wild-type HY or HY-Cd3e
PRS/
PRS bone marrow cells. Consistent with the results obtained with HY mice (Fig. 6a,b), spleens from control chimeras reconstituted with wild-type HY bone marrow cells contained 3.5-fold more CD8+ T3.70+ cells than did MHC class II–sufficient hosts reconstituted with HY-Cd3e
PRS/
PRS bone marrow cells (Fig. 6d and Supplementary Fig. 12a online). As expected, wild-type HY DP cells from MHC class II–deficient thymi expressed surface amounts of TCR similar to those noted on Cd3e
PRS/
PRS DP cells from either MHC class II–sufficient or MHC class II–deficient thymi (Supplementary Fig. 12b). Consistent with our results reported above (Fig. 5), the higher TCR surface expression on wild-type HY DP cells in MHC class II–deficient thymi correlated with more total CD3
, whereas TCR
and TCR
amounts were not modified much (Supplementary Fig. 12c). Regardless of the presence of more TCR at their surface, wild-type HY DP cells from MHC class II–deficient thymi generated mature T3.70+CD8+ T cells in numbers similar to those of HY DP cells from MHC class II–sufficient thymi (Fig. 6d and Supplementary Fig. 12a). These data demonstrate that increasing the expression of wild-type HY TCR complexes to that on HY-Cd3e
PRS/
PRS DP cells had no negative effect on positive selection, which therefore supported the conclusion that the affinity of the HY TCR is near the threshold that distinguishes lack of selection from positive selection33. The data also suggest that the CD3
PRS regulates TCR signaling in DP cells regardless of its effects on TCR expression.
Signaling defect in Cd3e
PRS/
PRS DP cells
To confirm the data reported above, we measured changes in intracellular calcium in response to anti-CD3
by DP cells from Cd3e
PRS/
PRS and Sla-
/-
mice. We reasoned that because these cells express identical amounts of cell surface TCR (Fig. 7a), they should allow unambiguous conclusions to be drawn about the unique signaling function of the CD3
PRS. CD4 SP cells from Cd3e
PRS/
PRS and Sla-
/-
mice showed identical calcium responses to anti-CD3
cross-linked with streptavidin (Fig. 7b). In contrast, DP cells from Cd3e
PRS/
PRS and Sla-
/-
mice showed very different responses: most DP cells from Sla-
/-
mice had more intracellular calcium after treatment with anti-CD3
alone, whereas Cd3e
PRS/
PRS DP cells required further cross-linking with streptavidin (Fig. 7b). Compared with wild-type DP cells, the high expression of signaling-proficient TCRs on DP cells from Sla-
/-
mice rendered them hyper-responsive to weak TCR stimuli; in contrast, despite similar high expression of TCR, Cd3e
PRS/
PRS DP thymocytes were less responsive than were wild-type DP cells to weak TCR stimuli (Fig. 7b). These results are thus consistent with our hypothesis that CD3
PRS lowered the signaling potential of TCR expressed on DP cells in addition to its effect on the regulation of TCR expression.
Figure 7: The CD3
PRS enhances the responsiveness of DP thymocytes to weak TCR stimuli.
(a,b) Flow cytometry of cell surface TCR expression (a) and changes in intracellular calcium (b) for DP and CD4+ SP thymocytes (genotype, key). (b) Calcium fluxes on the whole cell populations (top and middle) and percent cells responding over a relative fluorescence threshold of 150 (bottom). The addition of ionomycin at 9 min ensured the cells were properly loaded with Indo-1. (c) Expression of CD4, CD8 and CD5 by thymocytes and splenocytes (genotype, left margin). Numbers in and adjacent to outlined areas indicate percent cells in specified windows. (d) Expression of TCR
, CD3
, CD24 and CD5 on DP and CD4+ SP thymocytes from Zap70-
/-
mice (gray filled histograms), Zap70-
/-
Sla-
/-
mice (green lines) and Zap70-
/-
Cd3e
PRS/
PRS mice (blue lines). Data are representative of at least two independent experiments.
In further experiments we used mice deficient in the tyrosine kinase Zap70 (in which T cell development is arrested at the DP stage) crossed with Cd3e
PRS/
PRS and Sla-
/-
mice. Consistent with a published report3, ablation of SLAP enabled Zap70-deficient DP cells to progress to the SP stage and to give rise to small numbers of mature CD4+ T cells in the periphery (Fig. 7c,d); presumably these effects were due to greater overall signaling from more signaling-competent TCRs. In contrast, the similarly considerable amount of TCR present on Cd3e
PRS/
PRSZap70-
/-
DP cells failed to compensate for the weaker TCR signals resulting from the lack of Zap70, and we found neither SP cells nor peripheral CD5+CD4+ T cells in Cd3e
PRS/
PRSZap70-
/-
mice (Fig. 7c,d). Therefore, although SLAP and the CD3
PRS acted together in the regulation of CD3
degradation to maintain low TCR expression on DP cells, only the CD3
PRS contributed to enhanced DP cell responsiveness to weak TCR ligands.
The CD3
PRS is required for CD3
phosphorylation
To determine how the CD3 PRS influences TCR responsiveness and SLAP-dependent CD3
degradation in preselection DP cells, we left Cd3e
PRS/
PRS and Sla-
/-
thymocytes unstimulated or stimulated them with anti-CD3
and then analyzed whole-cell lysates by immunoblot with antibody to phosphorylated tyrosine (anti-phosphotyrosine). After TCR cross-linking, Cd3e
PRS/
PRS and Sla-
/-
thymocytes had similar inducible phosphorylated species (Fig. 8a). However, in independent experiments we noted that anti-CD3
-induced bands migrating at the position expected for c-Cbl, the adaptor Vav, Zap70 and the adaptor Lat were always stronger in Sla-
/-
thymocytes than in Cd3e
PRS/
PRS thymocytes; Sla-
/-
thymocytes also had greater and more sustained phosphorylation of Erk1 and Erk2 kinases (Fig. 8b). Relative to Cd3e
PRS/
PRS thymocytes, unstimulated and stimulated Sla-
/-
thymocyte had a protein that migrated as a 21-kilodalton species and probably corresponded to the p21 tyrosine-phosphorylated CD3
isoform (Fig. 8c). Therefore, despite the presence of identical amounts of TCR complexes on the surface of Cd3e
PRS/
PRS and Sla-
/-
thymocytes, the lack of CD3
PRS resulted in less constitutive and TCR-induced phosphorylation of CD3
p21.
Figure 8: Tyrosine phosphorylation in thymocytes from wild-type, Cd3e
PRS/
PRS and Sla-
/-
mice after TCR cross-linking.
(a–c) Analysis of thymocytes (genotype, above blots) left untreated or stimulated with anti-CD3
for 1–30 min (above lanes) and immediately lysed; whole-cell lysates were separated by 8% SDS-PAGE (a,b) or 12.5% SDS-PAGE (c). (a,b) Immunoblot analysis with anti-phosphotyrosine (
-phosphotyrosine (P-Tyr-100); a) or antibody to Erk1/2 phosphorylated at Thr202 and Tyr204 (
-phospho-p44/p42 Erk1/2 (Thr202,Tyr204); b, top) and anti-Erk1/2 (
-p44/p42 Erk1/2; b, bottom). Arrowheads indicate presumed proteins based on their expected molecular size. (c) Immunoblot analysis of the p21 form of tyrosine-phosphorylated CD3
subunit with anti-phosphotyrosine. Below, membranes stripped and reprobed with anti-CD3
and antibody to phospholipase C-
1 (
-PLC
1). (d) Immunoassay of thymocytes left untreated or stimulated for 10 min with anti-CD3
; lysate aliquots corresponding to equivalent amounts of proteins for each sample were immunoprecipitated with anti-CD3
, separated by 12.5% SDS-PAGE and analyzed by immunoblot with anti-phosphotyrosine (4G10). Below, membranes stripped and reprobed with anti-CD3
(M-20) and anti-CD3-
(H46-968) to confirm the position of the CD3
subunit and evaluate the ratio of the 16-kilodalton and p21 isoforms of CD3
. Data are representative of at least two independent experiments.
To confirm the results reported above, we left wild-type, Cd3e
PRS/
PRS and Sla-
/-
thymocytes untreated or stimulated them with anti-CD3
, then precipitated TCR complexes with anti-CD3 and analyzed them by immunoblot with anti-phosphotyrosine, anti-CD3
or anti-CD3
. Comparison of the Cd3e
PRS/
PRS and Sla-
/-
samples showed that engagement of TCR expressed on Sla-
/-
thymocytes led to the generation of stronger CD3
p21, CD3
p23 and CD3
phosphorylated isoforms (Fig. 8d), and the anti-CD3
immunoblot confirmed that p21 was far less abundant in Cd3e
PRS/
PRS thymocytes than in Sla-
/-
thymocytes. The very distinct amounts of TCR expressed on the surface of wild-type and of mutant thymocytes complicated direct comparison of wild-type and Cd3e
PRS/
PRS thymocytes (Fig. 7a); however, analysis of the anti-CD3
immunoblots indicated that although Cd3e
PRS/
PRS thymocytes contained more CD3
subunits than did wild-type thymocytes, they had less abundant expression (in unstimulated conditions) or at most equal expression (in TCR-stimulated conditions) of the p21-phosphorylated isoform of CD3
. These results collectively suggest that in preselection DP cells, the CD3
PRS controls the amount of CD3
phosphorylation, which therefore explains how the CD3
PRS affects SLAP-dependent CD3
degradation. Moreover, on a 'per-TCR' basis, the TCR-CD3 complexes expressed on Cd3e
PRS/
PRS DP cells showed impaired signaling (Fig. 7) that could explain the lower positive selection noted in TCR-transgenic mice expressing CD3
PRS subunits (Supplementary Fig. 13 online).
Discussion
Using 'knock-in' mice with deletion of the CD3
PRS, we have shown that the PRS is dispensable for TCR 'data transfer' through the plane of the membrane; our data are consistent with results of a published study limited to the use of 'superantigens'24 and further indicate that the PRS is dispensable for the activation of mature CD4+ and CD8+ T cells in response to physiological amounts of pMHC. At variance with the other published results23, 26, 27, 34, 35, however, we found that stimulation with anti-CD3
did not lead to new exposure of the CD3
PRS, as detected with either the Nck-SH3.1 domain or the APA1/1 antibody. We found that the CD3
PRS was instead constitutively exposed in DP and mature T cells regardless of TCR engagement and that its accessibility was modestly higher after stimulation with anti-CD3
. At present we do not have an explanation for the discrepancy between our results here and those published before. However, it is important to emphasize that constitutive accessibility of the CD3
PRS allows its involvement in the chronic, antigen-independent TCR downregulation that characterizes preselection DP thymocytes (discussed below). In mice able to generate a complete repertoire of 
TCRs, the Cd3e
PRS mutation had a limited effect on T cell development. However, the progeny of Cd3e
PRS bred with mice expressing transgenic 
TCRs had protracted kinetics of negative selection and substantially less positive selection, which can lead to the selection of TCRs whose affinity for self-pMHC ligands is higher than that of TCRs from wild-type mice.
Unexpectedly, analysis of Cd3e
PRS/
PRS mice showed that the CD3
PRS contributed to downregulate TCR expression on DP cells, an effect not reported in a published study of transgenic mice expressing retrovirus-expressed CD3
with deletion of the PRS24. Enhanced TCR-CD3 complexes are also found in DP thymocytes deficient in either SLAP or c-Cbl3, 15. Here we have provided biochemical and genetic evidence that the CD3
PRS and SLAP act together to regulate TCR expression in DP cells: thymocytes deficient in the CD3
PRS resembled those lacking SLAP or c-Cbl13 in that they failed to efficiently degrade the CD3
subunit of the TCR-CD3 complex. Given that the CD3
subunit limits the number of TCR complexes expressed on the surface of DP cells36 and that the internalization and recycling dynamics and 'neosynthesis' of the TCR-CD3 complexes were not affected by the lack of CD3
PRS, it is likely that the model developed before for DP cells deficient in SLAP or c-Cbl13 also applies to Cd3e
PRS/
PRS DP thymocytes. Accordingly, the defect in CD3
degradation that characterized the DP cells of Cd3e
PRS/
PRS and Sla-
/-
mutant mice led to more fully assembled TCR-CD3 complexes that recycled back to the cell surface.
Four observations indicate that the CD3
PRS has an additional signaling function not shared by SLAP, however. First, expression of CD44 and CD5 on Cd3e
PRS/
PRS and Sla-
/-
thymocytes differed considerably. Second, elimination of SLAP and the CD3
PRS had different effects on positive selection of DP cells expressing transgenic TCRs. Third, in contrast to results obtained with Sla-
/-
Zap70-
/-
mice, elimination of the CD3
PRS failed to restore the development of Zap70-
/-
SP thymocytes and peripheral T cells. Fourth, DP thymocytes from Cd3e
PRS/
PRS mice were less responsive than were wild-type and Sla-
/-
DP cells to weak TCR stimuli. That last observation suggests that the CD3
PRS heightens the sensitivity of DP thymocytes to weak self-pMHC ligands.
In the thymus, the CD4 molecules on the surface of preselection DP cells constitutively interact with MHC class II molecules expressed on cortical thymic epithelial cells4. Those interactions trigger signals that are conveyed through a Lck–CD3
–SLAP–c-Cbl pathway and downregulate the expression of TCR-CD3 complexes at the surface of preselection DP cells13. Analysis of DP cells with single or combined deletion of SLAP and the CD3
PRS showed that both were required for TCR downregulation because they acted together to degrade the CD3
subunit of TCR-CD3 complexes.
How does the CD3
PRS influence the SLAP-dependent degradation of phosphorylated CD3
subunits? In mature T cells, CD4 and CD8 molecules function, through contact of their extracellular domain with pMHC molecules, as coreceptors and as specialized 'devices' that bring their intracellular domain–associated Lck molecules in contact with pMHC-occupied TCR-CD3 complexes, thereby triggering CD3 ITAM phosphorylation37. In contrast, on preselection DP cells, the CD4-Lck–dependent mechanism responsible for decreasing TCR expression occurs independently of TCR-pMHC interactions3; consequently, interaction between CD4-associated Lck molecules and CD3
subunits of TCR-CD3 complexes and subsequent phosphorylation of CD3
cannot rely on interaction between the CD4 extracellular domain and TCR engaged with pMHC class II ligand. So, then, what mechanism leads to the association of Lck with TCR-CD3 complexes in DP cells? Our data suggest that DP cells use an alternative mode of Lck recruitment that occurs intracellularly and is based on the CD3
PRS. On the basis of the observation that the CD3
PRS controls the amount of phosphorylated CD3
p21, an Lck-dependent phosphorylated isoform38, we suggest that in preselection DP cells, the CD3
PRS recruits Lck and controls the phosphorylation of adjacent CD3
subunits, thereby triggering SLAP-dependent degradation of CD3
. We found that the Cd3e
PRS mutation prevented docking of the adaptor Nck and that the unique domain of Lck contains a putative binding site for the Nck-SH3 domains (data not shown). It is thus possible that Nck serves as a physical 'bridge' between the CD3
PRS and Lck.
DP thymocytes express two closely related Nck family members (Nck1 and Nck2) that both interact with the CD3
PRS25, 39. Given that mice lacking genes encoding both Nck1 and Nck2 die in utero39, conditional deletion of these genes in DP cells will be required to confirm the hypothesis above and to determine whether their absence recapitulates the Cd3e
PRS/
PRS phenotype. Our study of TCR-transgenic mice has suggested that the functional link between the CD3
PRS and Lck in preselection DP cells leading to CD3
degradation also operates at the onset of positive selection. For example, by associating with the CD3
PRS, Lck molecules are in essence 'precoupled' with TCR complexes, thus conferring on them higher signaling competence toward weak pMHC agonists. This 'precoupled' signaling function for Lck is superseded at later steps of the selection process by binding of the ectodomains of CD4 and CD8 coreceptors to TCRs engaged by pMHC molecules. Consistent with that model, our analysis of the changes in extracellular calcium in response to anti-CD3
showed that the signaling function of the CD3
PRS became dispensable when DP cells were stimulated with strong TCR ligands. Therefore, the CD3
PRS signaling properties might account in part for the unique ability of DP cells to respond to weak self-pMHC ligands. Whether the ability of the CD3
PRS to recruit Lck applies to the CD4 and CD8 coreceptor-independent function of the pre-TCR40 and accounts for the impeded TCR
selection noted in Cd3e
PRS/
PRS thymi remains to be determined.
The compound functional properties of the CD3
PRS seem at first antithetical: less DP cell sensitivity through downregulation of TCR expression41 and yet coincident higher TCR signaling output. We suggest that the reason for evolving a sequence endowed with such 'paradoxical' properties lies in the unique dynamics of TCR
-chain rearrangements. At the DP stage, each TCR
locus experiences many rounds of secondary rearrangements that permit the specificity of the single, pre-existing TCR
chain present in each DP cell to be 'assayed' successively in the context of several distinct TCR
chains until the variable-(diversity)-joining recombination process is halted by positive selection42. By acting together to decrease the pool of cycling TCRs present in DP cells, the CD3
PRS and SLAP might increase the 'sampling' rate of the new TCR
chains that are sequentially synthesized during the life of a DP cell43. To permit the positive selection of some of those TCR complexes that, by necessity, have low expression on the surface of DP cells, the CD3
PRS concurrently functions to increase their signaling output.
What restricts the CD3
degradation pathway controlled by the CD3
PRS and SLAP to the DP stage of development? It has been shown that phosphorylation of the tyrosine residue shared by the PRS and the ITAM of CD3
abolishes the binding of Nck-SH3 domains to the PRS25. Accordingly, by triggering biphosphorylation of CD3 ITAMs, positive selection might allow binding of Zap70 molecules that 'out-compete' Nck and SLAP molecules, thereby preventing SLAP-dependent and CD3
PRS–dependent degradation of TCR-CD3 complexes. Such a putative (post-translational) switch could account for the rapid TCR upregulation associated with the transition from DP to SP thymocytes. Subsequently, the decrease in SLAP transcription that follows transition to the SP stage3 might thereby 'fix' high surface TCR on the progeny of the positively selected DP cells.
In conclusion, our data have identified a previously unknown function for the evolutionary conserved CD3
PRS. This is different from the previous model that suggested that TCR-triggered inducible exposure of the CD3
PRS constitutes a crucial 'allosteric trigger' in the causality chain initiated by TCR engagement. Moreover, our data reinforce the view that unique mechanisms have developed in DP thymocytes to facilitate the 'screening' of distinct TCR
chains and to maximize, once incorporated to TCR complexes, their probability of being positively selected by weak self-pMHC ligands.
Methods
Mice.
Mice were housed in specific pathogen–free conditions and were handled in accordance with French and European directives. The generation of Cd3e
PRS/
PRS mice (B6-Cd3etm2Mal) is described in the Supplementary Methods online. Zap70-
/-
mice, Sla-
/-
mice, mice lacking the CD3
subunit (Cd3e
5/
5 mice) and Cd3e
5/
5 mice deficient in MHC class II molecules have been described3, 44, 45, 46. HY TCR-transgenic mice express a monoclonal population of CD8+ T cells specific for Smcy738-746, a male antigen presented by H-2Db molecules30; Marilyn TCR-transgenic mice express a monoclonal population of V
