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Please quote Nature Genetics as the source of these items.

The December 1999 issue of Nature Genetics is available online.

 December 1999 Previous | Next

Out of Africa: Part 2

Nature Genetics pp 437 - 441

Fossil evidence indicates that modern humans originated in Africa and then expanded from North Africa into the Middle East about 100,000 years ago. Silvana Santachiara-Benerecetti (of the University of Pavia) and colleagues now provide evidence that supports a second route of exit from Africa, whereby ancient peoples dispersed from eastern Africa and migrated along the coast to South Asia.

Mitochondria are tiny intracellular bodies that generate the energy needed to drive the activities of a cell. They have their own DNA, distinct and independent from nuclear DNA. Mitochondrial DNA can be 'fingerprinted' according to small variations in sequence and, because mitochondria are only inherited from the mother, used to trace maternal ancestry. Closely related mitochondrial DNA sequences fall within the same 'haplogroup', and insinuate -- but do not prove -- a close genetic relationship between the people who carry them. People in Asia and Ethiopia carry the 'M' mitochondrial haplogroup, which raises the question: how has this come about? Have their mitochondrial DNAs evolved independently, but, through coincidence, converged onto the same haplotype? Or does the similarity reflect a genetic relationship?

On scrutinizing the region of mitochondrial sequence in Africans and Indians, Santachiara-Benerecetti and coworkers ruled out the possibility that the M haplogroups in eastern-African and Asian populations arose independently -- rather, they have a common African origin. These findings, together with the observation that the M haplogroup is virtually absent in Middle-Eastern populations, support the idea that there was a second route of migration out of Africa, approximately 60,000 years ago, exiting from eastern Africa along the coast towards Southeast Asia, Australia and the Pacific Islands.


Genetic evidence of an early exit of Homo sapiens sapiens from Africa through eastern Africa pp 437 - 441
Lluís Quintana-Murci, Ornella Semino, Hans-J. Bandelt, Giuseppe Passarino, , Ken McElreavey & A. Silvana Santachiara-Benerecetti
doi:10.1038/70550
Abstract | Full text | PDF
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No sperm without USP9Y

Nature Genetics pp 429 - 432

Faulty sperm production, leading to infertility, can be caused by defects in the Y chromosome. Deletions that encompass any one of three regions of the Y chromosome are found in some infertile men, but critical genes within these regions have not, until now, been identified. David Page (of the Whitehead Institute) and colleagues now report mutations in the gene USP9Y in two infertile men. This is the first identification of a gene on the Y chromosome that, when mutated, results in failure to make sperm. These findings raise the possibility that mutations in USP9Y that lead to only a partial loss of function may underlie milder fertility problems in men.


An azoospermic man with a de novo point mutation in the Y-chromosomal gene USP9Y pp 429 - 432
Chao Sun, Helen Skaletsky, Bruce Birren, Keri Devon, Zhaolan Tang, Sherman Silber, Robert Oates & David C. Page
doi:10.1038/70539
Abstract | Full text | PDF
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Cathepsin C to the oral defense

Nature Genetics pp 421 - 424 and pp 378 - 380

As any dentist will tell you, regular brushing, flossing and swilling of mouthwash make for a sound set of teeth. But Nalin Thakker (of the University of Manchester) and colleagues now reveal that cathepsin C may prevent the pockets of infection that can occur around teeth -- a condition called periodontitis. The authors have discovered that people with Papillon-Lefevre syndrome (PLS), a hereditary disorder characterized by severe early-onset periodontitis, have mutations in the gene CTSC, encoding cathepsin C.

Cathepsin C is made by cells of the immune system to activate the enzymes needed to destroy diseased or infected cells, and minimize inflammation at sites of infection. People with PLS are susceptible to infection and inflammation of the gums, resulting in premature tooth loss (with loss of teeth by age fourteen). In addition, people with PLS have thick, scaly skin on their palms and soles, indicating that cathepsin C is also required for correct maturation and shedding of skin cells. The gums are attached to the teeth by a lining similar to the skin, so it is also possible that lack of cathepsin C in PLS sufferers weakens this mechanical barrier to microbial invasion, increasing susceptibility to periodontitis.

As suggested by Glen Nuckolls and Harold Slavkin (of the National Institutes of Heath) in an accompanying News & Views article, late-onset periodontitis, which affects more than 30% of the population, might be caused by mutations in CTSC that result in slight loss of cathepsin C activity. Cathepsin C may be a target for preventing and treating more common forms of gum disease.


Loss-of-function mutations in the cathepsin C gene result in periodontal disease and palmoplantar keratosis pp 421 - 424
Carmel Toomes, Jacqueline James, A. Joseph Wood, Chu Lee Wu, Derek McCormick, Nicholas Lench, Chelsee Hewitt, Leanne Moynihan, Emma Roberts, C. Geoffrey Woods, Alexander Markham, Melanie Wong, Richard Widmer, Khaled Abdul Ghaffar, Michael Pemberton, Ibtessam Ramzy Hussein, Samia A. Temtamy, Robin Davies, Andrew P. Read, Philip Sloan, Michael J. Dixon, & Nalin S. Thakker
doi:10.1038/70525
Abstract | Full text | PDF


Paths of glorious proteases pp 378 - 380
Glen H Nuckolls & Harold C Slavkin
doi:10.1038/70472
Abstract | Full text | PDF
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GetTINg to the end of telomeres

Nature Genetics pp 405 - 412 and pp 382 - 383

Telomeres are stretches of repeated DNA sequences that cap the ends of chromosomes, protecting them from damage and preventing chromosomes from fusing to each other. Changes in telomere length are implicated in human ageing and cancer, so knowing what regulates telomere length could improve our understanding of these processes. Judith Campisi (of Lawrence Berkeley National Laboratory) and colleagues now bring us one step closer with the discovery of a new protein, TIN2, that binds telomeres and negatively regulates their length.

After each cell division, a few telomeric repeats are lost -- these are replenished by telomerase, an enzyme expressed in young cells as well as some adult cells. But to maintain proper telomere length, the action of telomerase is counterbalanced by mechanisms that prevent telomeric repeats being extended too far. For example, telomeres form lasso-like loops, whereby the ends are folded back and tucked into the DNA strands. These are thought to serve two purposes: they hide the telomere ends from the cell’s damage surveillance system (which would otherwise mistake the ends as sites of damage) and render them inaccessible to telomerase. Campisi and coworkers report that TIN2 binds to TRF1, a protein that stabilizes the loop structure, and that these two proteins act together to counteract telomere elongation by telomerase; loss of either protein leads to abnormal lengthening of telomeres.

How TIN2 blocks telomere elongation is unknown. Jerry Shay (of University of Texas Southwestern Medical Center) suggests in an accompanying News & Views article that TIN2 may help TRF1 stabilize the loop structures that prevent telomerase access. Alternatively, TIN2 may recruit other proteins to telomere ends that block the action of telomerase. As such, it may be a target for treating cancer.


TIN2, a new regulator of telomere length in human cells pp 405 - 412
Sahn-ho Kim, Patrick Kaminker & Judith Campisi
doi:10.1038/70508
Abstract | Full text | PDF


At the end of the millennium, a view of the end pp 382 - 383
Jerry W Shay
doi:10.1038/70480
Abstract | Full text | PDF
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The tale of a fish tail

Nature Genetics pp 442 - 446 and p 379

The vertebrate skeleton is formed by a complex interplay between activating and repressive signals during embryonic development. Bone morphogenetic proteins (BMPs) stimulate the formation of cells that deposit the bone matrix. But to prevent excessive cartilage and bone growth, the activities of BMPs are kept in check by inhibitory factors. Shannon Fisher and Marnie Halpern (of the Carnegie Institution of Washington) now reveal that chordin, a protein involved in the early patterning of embryos, seems to block the activity of BMPs to allow normal development of the skeleton. The authors found that zebrafish lacking chordin have aberrant expression of BMPs and develop stunted fins and tails, as vividly illustrated in the photographs that accompany the report. But these defects can be reversed if the gene encoding chordin is injected into the embryo at an early stage of development. These findings indicate that chordin is a critical signalling factor in the developing vertebrate skeleton and, as noted by Rik Derynck (of University of California) in an accompanying commentary, demonstrate the power of using model organisms to fish out the factors that control embryonic development.


Patterning the zebrafish axial skeleton requires early chordin function pp 442 - 446
Shannon Fisher & Marnie E. Halpern
doi:10.1038/70557
Abstract | Full text | PDF


Skeletal development in the zebrafish p 379
Rik Derynck
doi:10.1038/70474
Abstract | Full text | PDF
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