Melo et al. reply:
We are satisfied to learn that the presence of TARBP2 mutations in human primary colorectal tumors within the context of putative hereditary non-polyposis colorectal cancer (HNPCC) cases that we initially reported in 20091 has been confirmed in the correspondence by Garre et al.2. The difference between their findings and our initial observation was the frequency of this event. In Garre et al.2, the authors used a technique based on fragment length differences that we do not consider acceptable to detect a 1-nucleotide change in a pool of normal contaminating material that biases against the amplification and detection of a longer allele. We recommend the cloning and sequencing of 12 PCR products from each sample, as we did, to accurately detect the presence of the mutant allele in each case. Interestingly enough, reanalysis of their data excluding HNPCC cases in which bona fide germline mutations in mismatch repair genes were not identified (n = 27) doubles the incidence of TARBP2 mutations.
References
Melo, S.A. et al. Nat. Genet. 41, 365–370 (2009).
Garre, P. et al. Nat. Genet. 42, 817–818 (2010).
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Melo, S., Esteller, M. Reply to “Reassessing the TARBP2 mutation rate in hereditary nonpolyposis colorectal cancer”. Nat Genet 42, 818 (2010). https://doi.org/10.1038/ng1010-818
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DOI: https://doi.org/10.1038/ng1010-818