Journal home
Advance online publication
Current issue
Archive
Press releases
Free Association (blog)
Supplements
Focuses
Guide to authors
Online submissionOnline submission
For referees
Free online issue
Contact the journal
Subscribe
Advertising
work@npg
Reprints and permissions
About this site
For librarians
 
NPG Resources
Nature
Nature Biotechnology
Nature Cell Biology
Nature Medicine
Nature Methods
Nature Reviews Cancer
Nature Reviews Genetics
Nature Reviews Molecular Cell Biology
news@nature.com
Nature Conferences
RNAi Gateway
NPG Subject areas
Biotechnology
Cancer
Chemistry
Clinical Medicine
Dentistry
Development
Drug Discovery
Earth Sciences
Evolution & Ecology
Genetics
Immunology
Materials Science
Medical Research
Microbiology
Molecular Cell Biology
Neuroscience
Pharmacology
Physics
Browse all publications
Article
Nature Genetics  4, 373 - 380 (1993)
doi:10.1038/ng0893-373

Rapid cDNA sequencing (expressed sequence tags) from a directionally cloned human infant brain cDNA library

Mark D. Adams1, M. Bento Soares2, Anthony R. Kerlavage1, Chris Fields1 & J. Craig Venter1

  1Receptor Biochemistry and Molecular Biology Section, NINDS/NIH, 9000 Rockville Pike, Bethesda, Maryland 20892, USA and The Institute for Genomic Research, 932 Clopper Road, Gaithersburg, Maryland 20878, USA

  2Department of Psychiatry, College of Physicians and Surgeons of Columbia University and New York State Psychiatric Institute, 722 W. 168th St., New York, New York 10032, USA

 Correspondence should be addressed to J.C.V. at TIGR

A human infant brain cDNA library, made specifically for production of expressed sequence tags (ESTs) was evaluated by partial sequencing of over 1,600 clones. Advantages of this library, constructed for EST sequencing, include the use of directional cloning, size selection, very low numbers of mitochondrial and ribosomal transcripts, short polyA tails, few non-recombinants and a broad representation of transcripts. 37% of the clones were identified, based on matches to over 320 different genes in the public databases. Of these, two proteins similar to the Alzheimer's disease amyloid precursor protein were identified.

REFERENCES
  1. Adams, M.D. et al. Complementary DNA sequencing: Expressed sequence tags and human genome project. Science 252, 1651−1656 (1991). | PubMed  | ISI | ChemPort |
  2. Adams, M.D. et al. Sequence identification of 2,375 human brain genes. Nature 355, 632−634 (1992). | Article | PubMed  | ISI | ChemPort |
  3. Adams, M.D., Kerlavage, A.R., Fields, C. & Venter, J.C. 3400 expressed sequence tags identify diversity of transcripts in human brain Nature Genet. 4, 256−267 (1993). | Article | PubMed  | ISI | ChemPort |
  4. Okubo, K. et al. Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression. Nature Genet. 2, 173−179 (1992). | PubMed  | ISI | ChemPort |
  5. Khan, A.S. et al. Single pass sequencing and physical and genetic mapping of human brain cDNAs. Nature Genet. 2, 180−185 (1992). | PubMed  | ISI | ChemPort |
  6. Adams, M.D., Fields, C. & Venter, J.C. Introns in sequence tags. Nature 357, 367−368 (1992). | Article | PubMed  | ISI | ChemPort |
  7. Kang, J. et al. The precursor of Alzheimer's disease amyloid A4 protein resembles a cell-surface receptor. Nature 325, 733−736 (1987). | Article | PubMed  | ISI | ChemPort |
  8. Vidal, F., Blangy, A., Rassoulzadegan, M. & Cuzin, F. A murine sequence-specific DNA binding protein shows extensive local similarities to the amyloid precursor protein. Biochem. Biophys. Res. Commun. 189, 1336−1341 (1992). | PubMed  | ISI | ChemPort |
  9. Wasco, W. et al. Identification of a mouse brain cDNA that encodes a protein related to the Alzheimer-associated amyloid protein precursor, Proc. natn. Acad. Sci. U.S.A. 89, 10758−10762 (1992). | ChemPort |
  10. Wasco, W. et al. The amyloid precursor-like protein (APLP) gene maps to the long arm of human chromosome 19. Genomics 15, 237−239 (1993). | Article | PubMed  | ISI | ChemPort |
  11. Altschul, S.F. et al. Basic local alignment search tool. J. molec. Biol. 215, 403−410 (1990). | Article | PubMed  | ISI | ChemPort |
  12. Uberbacher, E. & Mural, R. Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach. Proc. natn. Acad. Sci. U.S.A. 88, 11261−11265 (1991). | ChemPort |
  13. Sutcliffe, J.G. mRNA in the mammalian central nervous system. Ann. Rev. Neurosci. 11, 157 (1988). | Article | PubMed  | ISI | ChemPort |
  14. Puissant, C. & Houdebine, L.-M. An improvement of the single step method of RNA isolation by acid guanidinium-thiocyanate-phenol-chloroform extraction. BioFeedback 8, 148−149 (1990). | ChemPort |
  15. Chomczynski, P. & Sacchi, N. Single-step method of RNA isolation by acid guanidinium thyocyanate-phenol-choloroform extraction. Anal. Biochem. 162, 156−159 (1987). | Article | PubMed  | ISI | ChemPort |
  16. Maniatis, T., Fritsch, E.F. & Sambrook, J. in Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Press, New York, 1982).
  17. D'Alessio, J.M., Noon, M.C., Ley III, H.L. & Gerard, G.F. One-tube double-stranded cDNA synthesis using clones m-mlv reverse transcriptase. Focus 9, 1−4 (1987).
  18. Gubler, U. & Hoffman, B.J. A simple and very efficient method for generating cDNA libraries. Gene 25, 263−269 (1983). | PubMed  | ISI | ChemPort |
  19. Huynh, T.V., Young, R.A. & Davis, R.W. in DNA Cloning (ed. M. Glover) 49−78 (IRL Press, New York, 1985).
  20. Smith, C.L. et al. Strategies for mapping and cloning macroregions of mammalian genomes. Meth. Enzym. 151, 461−489 (1987). | Article | PubMed  | ChemPort |
  21. Kerlavage, A. et al. Analysis and management of data from high-throughput expressed sequence tag projects. Proc. 26th Hawaii Int. Conf. on System Sciences 585−594. (IEEE Computer Society Press, New York, 1993).
 Top
 Top
Abstract
Previous | Next
Table of contents
Download PDFDownload PDF
Send to a friendSend to a friend
Save this linkSave this link

Open Innovation Challenges

naturejobs

References
Export citation
Export references
natureproducts

Search buyers guide:

 
ADVERTISEMENT
 
Nature Genetics
ISSN: 1061-4036
EISSN: 1546-1718
Journal home | Advance online publication | Current issue | Archive | Press releases | Supplements | Focuses | For authors | Online submission | Permissions | For referees | Free online issue | About the journal | Contact the journal | Subscribe | Advertising | work@npg | naturereprints | About this site | For librarians
Nature Publishing Group, publisher of Nature, and other science journals and reference works©1993 Nature Publishing Group | Privacy policy