Letter abstract


Nature Genetics 39, 1390 - 1396 (2007)
Published online: 21 October 2007 | doi:10.1038/ng.2007.5

Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein

Na Xu1,3, Mary E Donohoe1,3, Susana S Silva1,2 & Jeannie T Lee1

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X-chromosome inactivation (XCI) ensures the equality of X-chromosome dosages in male and female mammals by silencing one X in the female1. To achieve the mutually exclusive designation of active X (Xa) and inactive X (Xi), the process necessitates that two Xs communicate in trans through homologous pairing2, 3. Pairing depends on a 15-kb region within the genes Tsix and Xite2. Here, we dissect molecular requirements and find that pairing can be recapitulated by 1- to 2-kb subfragments of Tsix or Xite with little sequence similarity. However, a common denominator among them is the presence of the protein Ctcf, a chromatin insulator4, 5, 6, 7 that we find to be essential for pairing. By contrast, the Ctcf-interacting partner, Yy1 (ref. 8), is not required. Pairing also depends on transcription. Transcriptional inhibition prevents new pair formation but does not perturb existing pairs. The kinetics suggest a pairing half-life of <1 h. We propose that pairing requires Ctcf binding and co-transcriptional activity of Tsix and Xite.

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  1. Howard Hughes Medical Institute Department of Molecular Biology, Massachusetts General Hospital Department of Genetics, Harvard Medical School Boston, Massachusetts 02114, USA.
  2. Gulbenkian PhD Programme in Biomedicine, Rua da Quinta Grande, 6, 2780-156, Oeiras, Portugal.
  3. These authors contributed equally to this work.

Correspondence to: Jeannie T Lee1 e-mail: lee@molbio.mgh.harvard.edu

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