Supplementary information

From the following article

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription

Daniel Zilberman, Mary Gehring, Robert K Tran, Tracy Ballinger & Steven Henikoff

Nature Genetics 39, 61 - 69 (2007)

doi:10.1038/ng1929

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Supplementary Fig. 1

Bisulfite sequencing analysis of Arabidopsis genes.

Supplementary Fig. 2

Functional annotation of methylated and unmethylated genes.

Supplementary Fig. 3

Box plots of genic methylation.

Supplementary Fig. 4

Relationship between DNA methylation and expression in Arabidopsis.

Supplementary Table 1

Bisulfite sequencing data, methylated vs. unmethylated gene calls and correlation between methylation in wild-type and expression in met1-6.

Supplementary Table 2

Average transcription levels and lengths of genes in functional categories.

Supplementary Table 3

Methylated genes are preferentially targeted by siRNAs.

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