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Perspective
Nature Genetics  32, 469 - 473 (2002)
doi:10.1038/ng1028

Microarray databases: standards and ontologies

Christian J. Stoeckert Jr1, Helen C. Causton2 & Catherine A. Ball3

1  Center for Bioinformatics and Department of Genetics, University of Pennsylvania, 423 Guardian Drive, Philadelphia, Pennsylvania 19104-6021, USA.

2  Clinical Sciences Centre/Imperial College Microarray Centre, Imperial College, Hammersmith Campus, Du Cane Road, London W12 ONN, UK.

3  Department of Genetics, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, California 94305-5120, USA.

Correspondence should be addressed to Christian J. Stoeckert Jr stoeckert@pcbi.upenn.edu
A single microarray can provide information on the expression of tens of thousands of genes. The amount of information generated by a microarray-based experiment is sufficiently large that no single study can be expected to mine each nugget of scientific information. As a consequence, the scale and complexity of microarray experiments require that computer software programs do much of the data processing, storage, visualization, analysis and transfer. The adoption of common standards and ontologies for the management and sharing of microarray data is essential and will provide immediate benefit to the research community.

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Nature Genetics
ISSN: 1061-4036
EISSN: 1546-1718
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