Journal home
Advance online publication
Current issue
Archive
Press releases
Free Association (blog)
Supplements
Focuses
Guide to authors
Online submissionOnline submission
For referees
Free online issue
Contact the journal
Subscribe
Advertising
work@npg
Reprints and permissions
About this site
For librarians
 
NPG Resources
Nature
Nature Biotechnology
Nature Cell Biology
Nature Medicine
Nature Methods
Nature Reviews Cancer
Nature Reviews Genetics
Nature Reviews Molecular Cell Biology
news@nature.com
Nature Conferences
RNAi Gateway
NPG Subject areas
Biotechnology
Cancer
Chemistry
Clinical Medicine
Dentistry
Development
Drug Discovery
Earth Sciences
Evolution & Ecology
Genetics
Immunology
Materials Science
Medical Research
Microbiology
Molecular Cell Biology
Neuroscience
Pharmacology
Physics
Browse all publications
Letter
Nature Genetics  14, 324 - 328 (1996)
doi:10.1038/ng1196-324

Positional cloning of the Fanconi anaemia group A gene

Sinoula Apostolou*1,13, Scott A. Whitmore*1,13, Joanna Crawford1,13, Gregory Lennon2,13, Grant R. Sutherland1,13, David F. Callen1,13, Leonarda lanzano3,14, Maria Savino3,14, Maria D'Apolito3,14, Angelo Notarangeio3,14, Elena Memeo3,14, Maria Rosaria Piemontese3,14, Leopoldo Zelante3,14, Anna Savoia3,12,14, Rachel A. Gibson4,15, Alex J. Tipping4,15, Neil V. Morgan4,15, Sheila Hassock4,15, Stander Jansen5,15, Thomy J. de Ravel6,15, Carola Van Berkell7,15, Jan C. Pronk7,15, Douglas F. Easton8,15, Christopher G. Mathew4,12,15, Orna Levran9,16, Peter C. Verlander9,16, Sat Dev Batish9,16, Tamar Erlich9,16, Arleen D. Auerbach9,12,16, Anne-Marie Cleton-Jansen10,17, Elna W. Moerland10,17, Cees J. Cornelisse10,17, Norman A. Doggett11,18, Larry L. Deaven11,18 & Robert K. Moyzis11,18

  1Dept of Cytogenetics and Molecular Genetics, Adelaide Women's and Children's Hospital, North Adelaide, South Australia 5006, Australia

  2Human Genome Centre, L-452 Lawrence Livermore National Laboratory, Livermore, California 94550, USA

  3Ospedale Casa Sollievo della Sofferenza, 1-71013 San Giovanni Rotondo, Foggia, Italy

  4Division of Medical & Molecular Genetics UMDS, 8th Floor Guy's Tower, Guy's Hospital, London SE1 9RT, UK

  5Dept of Human Genetics, Univ of the Orange Free State, South Africa

  6Dept of Human Genetics, South African Institute of Medical Research & Univ of the Witwatersrand, South Africa

  7Dept of Human Genetics, Free Univ, Amsterdam, The Netherlands

  8Genetic Epidemiology Unit, Institute of Public Health, Univ of Cambridge, UK

  9Laboratory of Human Genetics and Hematology, The Rockefeller Univ, 1230 York Avenue, New York, New York 10021-6399, USA

  10Dept of Pathology, Univ of Leiden, The Netherlands

  11Center for Human Genome Studies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA

  12Correspondence should be addressed to C.G.M., A.S. or A.D.A.

  13The Fanconi anaemia/Breast cancer consortium: Group 1

  14The Fanconi anaemia/Breast cancer consortium: Group 2

  15The Fanconi anaemia/Breast cancer consortium: Group 3

  16The Fanconi anaemia/Breast cancer consortium: Group 4

  17The Fanconi anaemia/Breast cancer consortium: Group 5

  18The Fanconi anaemia/Breast cancer consortium: Group 6

  *S.A. and S.A.W. contributed equally

The Fanconi anaemia/Breast cancer consortium* Fanconi anaemia (FA) is an autosomal recessive disorder associated with progressive bone-marrow failure, a variety of congenital abnormalities, and predisposition to acute myeloid leukaemia1. Cells from FA patients show increased sensitivity to bifunctional DNA crosslinking agents such as diepoxybutane and mitomycin C, with characteristic chromosome breakage2. FA is genetically heterogeneous, at least five different complementation groups (FA-A to FA-E) having been described3,4. The gene for group C (FAC) was cloned by functional complementation and mapped to chromosome 9q22.3 (refs 3, 5), but the genes for the other complementation groups have not yet been identified. The group A gene (FAA) has recently been mapped to chromosome 16q24.3 by linkage analysis6, and accounts for 60−65% of FA cases7,8. We narrowed the candidate region by linkage and allelic association analysis, and have isolated a gene that is mutated in FA-A patients. The gene encodes a protein of 1,455 amino acids that has no significant homology to any other known proteins, and may therefore represent a new class of genes associated with the prevention or repair of DNA damage.


REFERENCES
  1. Butturini, A. et al. Hematologic abnormalities in Fanconi anemia. An International Fanconi Anemia Registry Study. Blood 84, 1650−1655 (1994). | PubMed  | ISI | ChemPort |
  2. Auerbach, A.D. Fanconi anemia diagnosis and the diepoxybutane (DEB) test. Exp. Hematol. 21, 731−733 (1993). | PubMed  | ISI | ChemPort |
  3. Strathdee, C.A., Duncan, A.M.V. & Buchwald, M. Evidence for at least four Fanconi anaemia genes including FACC on chromosome9. Nature Genet. 1, 196−198 (1992). | PubMed  | ISI | ChemPort |
  4. Joenje, H. et al. Classification of Fanconi anaemia patients by complementation analysis: evidence for a fifth genetic subtype. Blood 86, 2156−2160 (1995). | PubMed  | ISI | ChemPort |
  5. Strathdee, C.A., Gavish, H., Shannon, W.R. & Buchwald, M. Cloning of cDNAs for Fanconi's anaemia by functional complementation. Nature 356, 763−767 (1992). | Article | PubMed  | ISI | ChemPort |
  6. Pronk, J.C. et al. Localisation of the Fanconi anaemia complementation group A gene to chromosome 16q24.3. Nature Genet. 11, 338−340 (1995). | PubMed  | ISI | ChemPort |
  7. Buchwald, M. Complementation groups: one or more per gene? Nature Genet. 11, 228−239 (1995). | PubMed  | ISI | ChemPort |
  8. Gschwend, M. et al. A locus for Fanconi anemia on 16q determined by homozygosity of mapping. Am.J.Hum. Genet. 59, 377−384 (1996). | ChemPort |
  9. Doggett, N.A., Breuning, M.H. & Callen, D.F. Report of the fourth international workshop on human chromosome 16 mapping 1995. Cytogenet. Cell Genet. 72, 271−293 (1996). | PubMed  | ISI | ChemPort |
  10. Cleton-Jansen, A.M. et al. At least two different regions are involved in allelic imbalance on chromosome arm 16q in breast cancer. Genes, Chromosomes Cancer 9, 101−107 (1994). | PubMed  | ChemPort |
  11. Doggett, N.A. et al. An integrated physical map of human chromosome 16. Nature 377, 335−365 (1995). | PubMed  | ISI | ChemPort |
  12. Stallings, R.L. et al. Evaluation of a cosmid contig physical map of human chromosome 16. Genomics 13, 1031−1039 (1992). | PubMed  | ISI | ChemPort |
  13. Lennon, G., Auffray, C., Polymeropoulos, M. & Soares, M.B. The I.M.A.G.E. Consortium: an Integrated Molecular Analysis of Genomes and their Expression. Genomics 33, 151−152 (1996). | Article | PubMed  | ISI | ChemPort |
  14. Savoia, A., Zatterale, A., Del Principe, D. & Joenje, H. Fanconi anaemia in Italy: high prevalence of complementation group A in two geographic clusters. Hum. Genet. 97, 599−603 (1996). | Article | PubMed  | ISI | ChemPort |
  15. Lo Ten Foe, J.R. et al. Expression cloning of a cDNA for the major Fanconi anaemia gene, FAA. Nature Genet. 14, 320−323 (1996). | Article | PubMed  | ChemPort |
  16. Nakai, K., Kanehisa, M. A knowledge base for predicting protein localisation sites in eukaryotic cells. Genomics 14, 897−911 (1992). | PubMed  | ISI | ChemPort |
  17. Robbins, J., Dilworth, S.M., Laskey, R.A. & Dingwall, C. Two interdependent basic domains in nucleoplasmin nuclear targeting sequence: identification of a class of bipartite nuclear targeting sequence. Cell 64, 615−23 (1991). | Article | PubMed  | ISI | ChemPort |
  18. Trumpp, A., Blundell, P.A., de la Pompa, J.L. & Zeller, R. The chicken limb deformity gene encodes nuclear proteins expressed in specific cell types during morphogenesis. Genes Dev. 6, 14−28 (1992). | PubMed  | ISI | ChemPort |
  19. Verlander, P.C. et al. Mutation analysis of the Fanconi anemia gene FACC. Am. J. Hum. Genet. 54, 595−601 (1994). | PubMed  | ISI | ChemPort |
  20. Gibson, R.A. et al. Novel mutations and polymorphisms in the Fanconi anaemia group C gene. Hum. Mutat. 8, 140−148 (1996). | Article | PubMed  | ISI | ChemPort |
  21. Liu, J.M., Buchwald, M., Walsh, C.E. & Young, N.S. Fanconi anemia and novel strategies for therapy. Blood 84, 3995−4007 (1994). | PubMed  | ISI | ChemPort |
  22. Dib, C. et al. The Généthon human genetic linkage map. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380, 152−154 (1996). | Article | PubMed  | ISI | ChemPort |
  23. Lathrop, G.M., Lalouel, J.M., Julier, C. & Ott, J. Strategies for multilocus linkage analysis in humans. Proc. Natl. Acad. Sci. USA 81, 3443−3446 (1984). | PubMed  | ChemPort |
  24. Church, D.M. et al. Isolation of genes from complex sources of mammalian genomic DNA using exon amplification. Nature Genet. 6, 98−105 (1994). | PubMed  | ISI | ChemPort |
  25. Buckler, A.J. et al. Exon amplification: a strategy to isolate mammalian genes based on RNA splicing. Proc. Natl. Acad. Sci. USA 88, 4005−4009 (1991). | PubMed  | ChemPort |
  26. Tagle, D.A., Swaroop, M., Lovett, M. & Collins, F.S. Magnetic bead capture of expressed sequences encoded within large genomic segments. Nature 361, 751−753 (1993). | Article | PubMed  | ISI | ChemPort |
  27. Sideras, P. et al. Transcription of unrearranged IgH chain genes in human B cell malignancies. Biased expression of genes encoded with the first duplication unit of the IgH chain locus. J. Immunol. 149, 244−252 (1992). | PubMed  | ISI | ChemPort |
  28. Gibson, R., Hajianpour, A., Murer-Orlando, M., Buchwald, M. & Mathew, C.G. A nonsense mutation and exon skipping in the Fanconi anaemia group C gene. Hum. Molec. Genet. 2, 797−799 (1993). | PubMed  | ISI | ChemPort |
  29. Orita, M., Sasaki, Y., Siya, T. & Hayashi, K. Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics 5, 874−879 (1989). | PubMed  | ISI | ChemPort |
 Top
 Top
References
Previous | Next
Table of contents
Download PDFDownload PDF
Send to a friendSend to a friend
Save this linkSave this link

Open Innovation Challenges

naturejobs

References
Export citation
Export references
natureproducts

Search buyers guide:

 
ADVERTISEMENT
 
Nature Genetics
ISSN: 1061-4036
EISSN: 1546-1718
Journal home | Advance online publication | Current issue | Archive | Press releases | Supplements | Focuses | For authors | Online submission | Permissions | For referees | Free online issue | About the journal | Contact the journal | Subscribe | Advertising | work@npg | naturereprints | About this site | For librarians
Nature Publishing Group, publisher of Nature, and other science journals and reference works©1996 Nature Publishing Group | Privacy policy