Nature Genetics
12, 436 - 441 (1996)
doi:10.1038/ng0496-436
Genetic mapping using haplotype, association and linkage methods suggests a locus for severe bipolar disorder (BPI) at 18q22-q23Nelson B. Freimer1, 2, 3, 9, Victor I. Reus2, Michael A. Escamilla1, 2, L. Alison Mclnnes3, Mitzi Spesny4, Pedro Leon4, Susan K. Service1, 2, Lauren B. Smith1, Sandra Silva4, Eugenia Rojas4, Alvaro Gallegos5, 2, Luis Meza5, Eduardo Fournier4, Siamak Baharloo1, Kathleen Blankenship1, David J. Tyler1, Steven Batki6, 2, Sophia Vinogradov2, Jean Weissenbach7, Samuel H. Barondes2
& Lodewijk A. Sandkuijl8
1Neurogenetics Laboratory, University of California San Francisco, San Francisco California 94143, USA.
2Center for Neurobiology and Psychiatry, Department of Psychiatry, University of California San Francisco, San Francisco California 94143, USA.
3Programs in Genetics and Biomedical Sciences, University of California, San Francisco, San Francisco, California 94143.
4Cell and Molecular Biology Research Center and Escuela de Medicina (P.L) Universidad de Costa Rica, San Jose, Costa Rica.
5Hospital Calderon Guardia, San Jose Costa Rica.
6Department of Psychiatry, University of California San Francisco, San Francisco General Hospital, San Francisco California 94110, USA.
7Généthon 1 rue de l'Internationale, 91000 Evry, France and Unité de Génétique Moléculaire Humaine, CNRS URA 1445, Institut Pasteur, 75724 Paris Cédex, France.
8Department of Clinical Genetics, Erasmus University, Rotterdam, Department of Human Genetics, Leiden University, Department of Medical Genetics, Groningen University, The Netherlands.
9Correspondence should be addressed to N.B.F. at U.C.S.F. email:nbfr@itsa.ucsf.edu. Manic-depressive illness, or bipolar disorder (BP), is characterized by episodes of elevated mood (mania) and depression1. We designed a multistage study in the genetically isolated population of the Central Valley of Costa Rica2,3 to identify genes that promote susceptibility to severe BP (termed BPI), and screened the genome of two Costa Rican BPI pedigrees (Mclnnes et al., submitted). We considered only individuals who full-filled very stringent diagnostic criteria for BPI to be affected. The strongest evidence for a BPI locus was observed in 18q22-q23. We tested 16 additional markers in this region and seven yielded peak lod scores over 1.0. These suggestive lod scores were obtained over a far greater chromosomal length (about 40 cM) than in any other genome region. This localization is supported by marker haplotypes shared by 23 of 26 BPI affected individuals studied. Additionally, marker allele frequencies over portions of this region are significantly different in the patient sample from those of the general Costa Rican population. Finally, we performed an analysis which made use of both the evidence for linkage and for association in 18q23, and we observed significant lod scores for two markers in this region.
REFERENCES
- Goodwin, F.K. & Jamison, K.R., Manic Depressive Illness. (New York: Oxford University Press, 1990).
- Freimer, N.B. et al. An approach to investigating linkage for bipolar disorder using large Costa Rican pedigrees. Neuropsychiat. Genet. (in the press).
- Escamilla, M.A. et al. The use of linkage disequilibrium approaches to map genes for bipolar disorder in the Costa Rican Population. Neuropsychiat. Genet.(in the press).
- Houwen, R.H.J. et al. Genome screening by searching for shared segments: mapping a gene for benign recurrent intrahepatic cholestasis. Nature Genet. 8, 380−388 (1994). | PubMed | ISI | ChemPort |
- Puffenburger, E.G., Lynn, A., Kunst, C., Warren, S. & Chakravarti, A. Genetic variation in the old order Mennonites of Lancaster County, PA. Am J. Hum. Genet. 57, A42 (1995).
- Ozelius, L.J. et al. Strong allelic association between the torsion dystonia gene (DYT1) and loci on chromosome 9q34 in Ashkenazi Jews. Am. J. Hum. Genet. 50, 619−628 (1992). | PubMed | ISI | ChemPort |
- Puffenberger, E.G. et al. Identity-by-descent and association mapping of a recessive gene for Hirschsprung disease on human chromosome 13q22. Hum. Mol. Genet. 3, 1217−1225 (1994). | PubMed | ISI | ChemPort |
- Copeman, J.B. et al. Linkage disequilibrium mapping of a type 1 diabetes susceptibility gene (IDDM7) to chromosome 2q31-q33. Nature Genet. 9, 80−85 (1995). | Article | PubMed | ISI | ChemPort |
- Friedman, T.B. et al. A gene for congenital recessive deafness DFNB3 maps to the pericentromeric region of chromosome 17. Nature Genet. 9, 86−91 (1995). | Article | PubMed | ISI | ChemPort |
- Boehnke, M. Allele frequency estimation from data on relatives. Am. J. Hum. Genet. 48, 22−25 (1991). | PubMed | ISI | ChemPort |
- Dausset, J. et al. Centre d'etude du polymorphisme humain (CEPH): collaborative genetic mapping of the human genome. Genomics 6, 575−577 (1990). | PubMed | ISI | ChemPort |
- Di Rienzo, A. et al. Mutational processes of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91, 3166−3170 (1994). | PubMed | ChemPort |
- Garza, J.C., Slatkin, M. & Freimer, N.B. Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size. Mol. Biol. Evol. 12, 594−603 (1995). | PubMed | ISI | ChemPort |
- Gruis, N.A. et al. Homozygotes for the CDKN2 (p16) germline mutation in Dutch familial melanoma kindreds. Nature Genet. 10, 351−353 (1995). | Article | PubMed | ISI | ChemPort |
- Ott, J. Analysis of Human Genetic Linkage. 2nd edn. (John Hopkins University Press, Baltimore, 1991).
- O'Connell, J.R. & Weeks, D.E. The VITESSE algorithm for rapid exact multilocus linkage analysis via genotype set-recoding and fuzzy inheritance. Nature Genet. 11, 402−408 (1995). | PubMed | ChemPort |
- Berrettini, W.H. et al. Chromosome 18 DNA markers and manic-depressive illness: evidence for a susceptibility gene. Proc. Natl. Acad. Sci. USA 91, 5918−5921 (1994). | PubMed | ChemPort |
- Stine, O.C. et al. Evidence for linkage of bipolar disorder to chromosome 18 with a parent-of-origin effect. Am. J. Hum. Genet. 56, 1384−1394 (1995).
- Weeks, D.E. & Lange, K. The affected-pedigree-member method of linkage analysis. Am. J. Hum. Genet. 42, 315−326 (1988). | PubMed | ISI | ChemPort |
- Hudson, T.J. et al. An STS-based map of the human genome. Science. 270, 1945−1954 (1995). | PubMed | ISI | ChemPort |
- Gyapay, G. et al. The 1993-94 Genethon human genetic likage map. Nature Genet. 7, 246−339 (1994). | PubMed | ISI | ChemPort |
- Pauls, D.L., Bailey, J.N., Carter, A.S., Allen, C.R. & Egeland, J.A. Complex segregation analyses of old order Amish families ascertained through bipolar I individuals. Am. J. Med. Genet. 60, 290−297 (1995). | PubMed | ISI | ChemPort |
- Spence, M.A. et al. Bipolar disorder: evidence for a major locus. Am. J. Med. Genet. 60, 370−376 (1995). | PubMed | ISI | ChemPort |
- Puffenberger, E.G. et al. A missense mutation of the endothelin-B receptor in multigenic Hirschsprung's disease. Cell 79, 1257−1266 (1994). | Article | PubMed | ISI | ChemPort |
- Baron, M. et al. Genetic linkage between X-chromosome markers and bipolar affective illness. Nature 326, 289−292 (1987). | Article | PubMed | ISI | ChemPort |
- Egeland, J.A. et al. Bipolar affective disorders linked to DNA markers on chromosome 11. Nature 325, 783−755 (1987). | Article | PubMed | ISI | ChemPort |
- Straub, R.E. et al. A possible vulnerability locus for bipolar affective disorder on chromosome 21 q22.3. Nature Genet. 8, 291−296 (1994). | PubMed | ISI | ChemPort |
- Kelsoe, J.R. et al. Re-evaluation of the linkage relationship between chromosome 11 p loci and the gene for bipolar affective disorder in the Old Order Amish. Nature 342, 238−243 (1989). | Article | PubMed | ISI | ChemPort |
- Baron, M. et al. Diminished support for linkage between manic depressive illness and X-chromosome markers in three Israeli pedigrees. Nature Genet. 3, 49−55 (1993). | PubMed | ISI | ChemPort |
- Nystrom-Lahti, M. et al. Close linkage to chromosome 3p and conservation of ancestral founding haplotype in hereditary nonpolyposis colorectal cancer families. Proc. Natl. Acad. Sci. USA 91, 6034−6058 (1994).
- Sherrington, R. et al. Cloning of a gene bearing missense mutations in early-onset familial Alzheimer's disease. Nature 375, 754−760 (1995). | Article | PubMed | ISI | ChemPort |
- Hastbacka, J. et al. The diastrophic dysplasia gene encodes a novel sulfate transporter: positional cloning by fine-structure linkage disequilibrium. Cell 78, 1073−1087 (1994). | Article | PubMed | ISI | ChemPort |
- Uhrhammer, N. et al. Sublocalization of an ataxia-telangiectasia gene distal to D11S384 by ancestral haplotyping in Costa Rican families. Am. J. Hum. Genet. 57, 103−111 (1995). | PubMed | ISI | ChemPort |
- Murray, J.C. et al. (CHLC). A comprehensive human linkage map with centimorgan density. Science 265, 2049 (1994). | PubMed | ISI | ChemPort |
- Schellenberg, G.D. et al. Association of an apolipoprotein Cll allele with familial dementia of the Alzheimer type. J. Neurogenet. 4, 97−108 (1987). | PubMed | ISI | ChemPort |
- Terwilliger, J.D. A powerful likelihood method for the analysis of linkage disequilibrium between trait loci and one or more polymorphic marker loci. Am. J. Hum. Genet. 56, 777−787 (1995). | PubMed | ISI | ChemPort |
- Lathrop, G.M., Lalouel, J.M. & Julier, C. Strategies for multilocus linkage analysis in humans. Proc. Natl. Acad. Sci. USA 81, 3443−3446 (1984). | PubMed | ChemPort |
- Farraway, J.J. Distribution of the admixture test for the detection of linkage under heterogeneity. Genet. Epidemiol. 10, 75−83 (1993). | PubMed | ISI | ChemPort |
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