Suppressor of Deltex mediates Pez degradation and modulates Drosophila midgut homeostasis

Wang, Chao; Zhang, Wenxiang; Yin, Meng-Xin; Hu, Lianxin; Li, Peixue; Xu, Jiajun; Huang, Hongling; Wang, Shimin; Lu, Yi; Wu, Wenqing; Ho, Margaret S.; Li, Lin; Zhao, Yun; Zhang, Lei

doi:10.1038/ncomms7607

Article
Published: 27 March 2015

Suppressor of Deltex mediates Pez degradation and modulates Drosophila midgut homeostasis

Chao Wang¹^na1,
Wenxiang Zhang¹^na1,
Meng-Xin Yin¹,
Lianxin Hu¹,
Peixue Li¹,
Jiajun Xu¹,
Hongling Huang²,
Shimin Wang¹,
Yi Lu¹,
Wenqing Wu¹,
Margaret S. Ho³,
Lin Li^4,5,
Yun Zhao^1,5 &
…
Lei Zhang^1,5

Nature Communications volume 6, Article number: 6607 (2015) Cite this article

4251 Accesses
13 Citations
1 Altmetric
Metrics details

Subjects

Abstract

Pez functions as an upstream negative regulator of Yorkie (Yki) to regulate intestinal stem cell (ISC) proliferation and is essential for the activity of the Hippo pathway specifically in the Drosophila midgut epithelium. Here we report that Suppressor of Deltex (Su(dx)) acts as a negative regulator of Pez. We show that Su(dx) targets Pez for degradation both in vitro and in vivo. Overexpression of Su(dx) induces proliferation in the fly midgut epithelium, which can be rescued by overexpressed Pez. We also demonstrate that the interaction between Su(dx) and Pez, bridged by WW domains and PY/PPxY motifs, is required for Su(dx)-mediated Pez degradation. Furthermore, we find that Kibra, a binding partner of Pez, stabilizes Pez via WW–PY/PPxY interaction. Moreover, PTPN14, a Pez mammalian homolog, is degraded by overexpressed Su(dx) or Su(dx) homologue WWP1 in mammalian cells. These results reveal a previously unrecognized mechanism of Pez degradation in maintaining the homeostasis of Drosophila midgut.

You have full access to this article via your institution.

Download PDF

The Drosophila ZNRF1/2 homologue, detour, interacts with HOPS complex and regulates autophagy

Article Open access 15 February 2024

GOLPH3 protein controls organ growth by interacting with TOR signaling proteins in Drosophila

Article Open access 27 November 2022

Damage sensing by a Nox-Ask1-MKK3-p38 signaling pathway mediates regeneration in the adult Drosophila midgut

Article Open access 25 September 2019

Introduction

The protein tyrosine phosphatase Pez is the Drosophila homologue of non-receptor type protein tyrosine phosphatase 14 (PTPN14), a regulator of the TGF-β pathway^1,2,3. PTPN14 overexpression activates TGF-β signalling and causes epithelial–mesenchymal transition (EMT)². Its overexpression is also correlated with lymphatic function, choanal development, angiogenesis and hereditary haemorrhagic telangiectasia^4,5. Recent studies have revealed that PTPN14 negatively regulates the oncogenic function of Yes-associated protein (YAP) through retaining YAP in the cytoplasm and sustaining the phosphorylation state of YAP^6,7,8,9. YAP is the transcription co-activator downstream of Hippo signalling to mediate the expression of various genes to promote growth, and its upregulation was found in a variety of human tumours and cancers^10,11,12.

Drosophila midgut, where the intestinal stem cells (ISCs) are under tight control to maintain homeostasis, has been developed as an excellent model to study adult stem cells in recent years^13,14. The Hippo signalling pathway has been shown to play an essential role in the regulation of ISC proliferation¹⁵. Pez has been identified as a negative upstream regulator of Yorkie (Yki), the Drosophila homologue of YAP, and is required for the activity of the Hippo pathway in the regulation of ISC proliferation¹⁶. However, how the stability and function of Pez are regulated remains unclear.

Suppressor of Deltex (Su(dx)) is a member of the NEDD4 (neural precursor cell-expressed developmentally downregulated gene 4) family E3 ubiquitin ligase¹⁷. There are three typical NEDD4 family members in Drosophila, dSmurf, Su(dx) and NEDD4. Each of them contains an N-terminal phospholipid binding C2 domain, four WW domains and a C-terminal HECT-type ligase domain. Su(dx) was first reported as a negative regulator of the Notch signaling pathway¹⁸. It downregulates the expression of Notch target genes through promoting Notch endosomal sorting^19,20.

In this study, we show that Su(dx) targets Pez for degradation both in vitro and in vivo. Su(dx) overexpression induces cell proliferation in Drosophila midgut by downregulating Pez protein levels. We also demonstrate that Su(dx) directly interacts with Pez via its WW domains and Pez’s PY/PPPY motifs. This interaction subsequently promotes Pez ubiquitylation. Furthermore, we find that Kibra, a WW domain containing Pez binding partner, stabilizes Pez on interaction. Moreover, we provide evidence that overexpression of Su(dx) or its homologue WWP1 is able to degrade PTPN14 in mammalian culture cells, indicating a possibility that a conserved mechanism of Pez degradation may play an essential role in maintaining tissue homeostasis.

Results

Su(dx) governs Pez stability against proteasomal degradation

Drosophila Pez is a newly identified component of the Hippo signalling pathway and specifically functions to restrict the growth of adult midgut epithelium¹⁶. To date, the degradation mechanism of Pez remains poorly defined. Pez contains multiple proline-rich motifs, which can associate with WW domains to mediate protein–protein interaction²¹. Therefore, we speculated that Pez is likely to be a substrate of WW domain containing NEDD4-like ubiquitin E3 ligases. Screening of NEDD4 family HECT (homologous to E6-associated protein C-terminus) E3 ligases, such as dSmurf, Su(dx) and NEDD4, showed a marked decrease of Pez protein levels when one of the NEDD4 family E3 ligase Su(dx) was coexpressed in S2 cells (Fig. 1a). Notably, treatment of proteasome inhibitor MG132 reversed the decrease of Pez protein levels (Fig. 1b). The amino-acid Cysteine 917 of Su(dx) is a crucial residue responsible for HECT domain catalytic activity¹⁷. Coexpression of a Su(dx) mutant protein that contains a cysteine-to-alanine substitution at 917 residue (Su(dx)C917A) failed to promote Pez degradation (Fig. 1b). Therefore, Su(dx) regulates Pez protein levels in a proteasome-dependent manner as well as a catalytic activity-dependent manner. Furthermore, coexpression of Su(dx), but not Su(dx)C917A, decreased Pez protein levels in a dosage-dependent manner (Supplementary Fig. 1a). To verify if Su(dx) truly induces Pez destabilization, we checked whether the Su(dx) depletion induces changes in endogenous Pez protein levels. A significant stabilization of endogenous Pez was observed on depletion of Su(dx) expression by Su(dx) dsRNA (Fig. 1c). The reliability of Pez antibody was confirmed as endogenous Pez was efficiently knocked down by Pez dsRNA in S2 cells (Supplementary Fig. 1b). Of note, Su(dx) dsRNA can effectively knockdown Su(dx) at both mRNA level and protein level without impacts on Pez mRNA level (Supplementary Fig. 1c,d). In addition, we monitored the level of the transfected Flag-Pez after treatment of the protein synthesis inhibitor, cycloheximide (CHX). We found that knockdown of Su(dx) markedly increased the half-life of Flag-Pez (Supplementary Fig. 1e,f). Collectively, Pez stability is regulated by Su(dx) in proteasome-dependent and catalytic activity-dependent manners in S2 cells.

**Figure 1: Su(dx) promotes Pez degradation *in vitro* and *in vivo*.**

To determine whether Su(dx) mediates Pez degradation in vivo, we monitored endogenous Pez protein levels in Drosophila imaginal discs. We used a functional GFP-tagged Pez (Pez-GFP), which is encoded by a genomic rescue construct, to indicate the endogenous Pez protein levels (Fig. 1d)¹⁶. Pez RNAi transgene (v40743) was expressed under the control of the patched-Gal4 (Ptc-Gal4) driver, which drives gene expression in a stripe of anterior compartment cells along the anterior/posterior (A/P) compartment boundary of imaginal discs. A stripe of decreased Pez-GFP signal intensity was detected when Pez expression was inhibited (compare Supplementary Fig. 1h with Supplementary Fig. 1g). As expected, overexpression of Su(dx) under the control of Ptc-Gal4 resulted in a decreased Pez-GFP level in this region (compare Fig. 1e with Fig. 1d), suggesting that Pez protein levels are downregulated. In contrast, expression of Su(dx)C917A did not affect Pez-GFP levels (Fig. 1f), which is consistent with our in vitro data. Moreover, we examined the effects of Su(dx) knockdown on Pez protein levels. As shown in Fig. 1g, knockdown of Su(dx) by Ptc-Gal4>Su(dx)RNAi significantly upregulated Pez-GFP expression in wing discs. Taken together, these observations suggest that Su(dx) regulates Pez protein stability both in vitro and in vivo.

Su(dx) overexpression induces intestinal proliferation

A previous study reported that Pez functions in Drosophila midgut¹⁶. We then tested whether Pez is degraded by Su(dx) in midgut. Pez-GFP was evenly expressed in adult midgut (Fig. 2a, Supplementary Fig. 2a), and it decreased markedly when Su(dx) was overexpressed in EC cells using a Myo1A^ts-Gal4 driver (Fig. 2b). In contrast, Pez-GFP levels was not affected in midgut overexpressing Su(dx)C917A (Fig. 2c). Moreover, Su(dx) knockdown by RNAi increased Pez-GFP expression (Fig. 2d). These results were confirmed by western blot analysis (Fig. 2e). On the basis of these findings, we concluded that Su(dx) regulates Pez stability in Drosophila midguts.

**Figure 2: Su(dx) overexpression in enterocytes induces *Drosophila* adult gut proliferation.**

Previous studies have shown that loss of Pez induces intestinal hyperplasia and augments the activities of JAK/STAT and EGFR pathways¹⁶. We therefore speculated that overexpression of Su(dx) might produce similar phenotypes as when Pez is absent. Consistent with previous findings, Pez loss-of-function (Pez^1/2) induced a hyperplasia of Drosophila midgut epithelium with an increase of Phospho-Histone3 (PH3)-positive cells and an elevation of unpaired3 (upd3) and vein (vn) transcription levels (Supplementary Fig. 2b-d). Overexpression of Su(dx), but not its C917A mutant, in EC cells using a Myo1A^ts-Gal4 driver induced an obvious hyperplasia (Fig. 2f) with a marked increase of PH3-positive cells (Fig. 2g,h). Concomitantly, the transcription levels of upd3 and vn that represent JAK/STAT and EGFR activation were also significantly increased (Fig. 2i). Of note, upd3 expression was approximately 12-fold higher, whereas vn expression increased about twofold, compared with control guts (Fig. 2i). Furthermore, the elevation of EGFR pathway activity was reflected by the increase of dpERK level in midguts (Fig. 2j–l), which is similar to Pez loss-of-function phenotype (Supplementary Fig. 2e,f). These findings confirmed that Su(dx) overexpression induces similar overgrowth phenotypes as Pez loss-of-function does in midguts. In addition, we expressed Su(dx) and its C917A mutant in midgut ISCs and EBs using an escargot-Gal4 temperature-sensitive driver (Esg^ts). Consistently, expression of Su(dx), but not Su(dx)C917A, slightly increased the numbers of PH3-positive cells and upregulated the activities of JAK/STAT and EGFR pathways (Supplementary Fig. 2g–k). Collectively, our results suggest that Su(dx) overexpression induces the proliferation of intestine resembling the phenotypes caused by the absence of Pez, and Su(dx) promotes Pez degradation to inhibit the function of Pez in midgut.

Previous studies reported that Pez loss-of-function induces the proliferation of adult midgut ISCs yet does not affect intestinal cell differentiation (Supplementary Fig. 3a–c)¹⁶. On cell division, ISCs undergo self-renewal or proliferation to become enteroblasts (EBs), quiescent progenitor cells that ultimately differentiate into enterocytes (ECs) or enteroendocrine (ee) cells^13,22. We then checked whether overexpressing Su(dx) in ECs affects cell differentiation in Drosophila midgut. According to the expression of EC marker Myo1A-GFP and ee cell marker Prospero (Pros), the numbers of ECs and ee cells were increased when Su(dx) was overexpressed in ECs. Overexpressed Su(dx) also induced increase of ISCs and EBs (Supplementary Fig. 3d,e). Also, the ratio of numbers of different cell types was not affected (Supplementary Fig. 3g). On the contrary, overexpression of Su(dx)C917A did not affect the numbers of ISCs, ECs or ee cells (Supplementary Fig. 3f,g). On the basis of these findings, we concluded that overexpression of Su(dx) promotes midgut cell proliferation but does not affect midgut cell differentiation.

PY/ PPxY motifs and WW domains mediate Pez degradation

To further explore the physical and functional interaction of Su(dx) and Pez, we first checked whether Pez and Su(dx) interact with each other by co-immunoprecipitation (Co-IP) assay in S2 cells. As shown in Fig. 3a, reciprocal interaction between Flag-Pez and Myc-Su(dx) was detected. We also found that overexpressed Myc-Su(dx) associated with endogenous Pez in S2 cells (Supplementary Fig. 4a). We then checked the localization of Pez and Su(dx) in S2 cells. When expressed alone in S2 cells, Flag-Pez was distributed evenly in the cytoplasm. Coexpression of Myc-Su(dx) changed the distribution pattern of Flag-Pez, and Myc-Su(dx) and Flag-Pez partially co-localized in cytoplasm (Supplementary Fig. 4b–d).

**Figure 3: Su(dx) ubiquitylates Pez both *in vivo* and *in vitro*.**

Because Su(dx) promotes Pez degradation in a proteasome-dependent manner (Fig. 1b), we tested whether Su(dx) mediates the ubiquitylation of Pez. As shown in Fig. 3b, Su(dx) markedly enhanced Pez ubiquitylation in a catalytic activity-dependent manner in S2 cells, which consists with the result of in vitro ubiquitylation experiment (Fig. 3c). It indicates that Su(dx) regulates Pez stability by promoting its ubiquitin-dependent proteomic degradation.

Pez has a conserved PY motif (437aa–445aa: PTYRPAPDY, PY), a PPxY motif (553aa–556aa: PPPY) and a PPxxY motif (686aa–690aa: PPSGY), whereas Su(dx) contains four WW domains (Fig. 4a). It is well known that WW domains and proline-rich motifs mediate various protein–protein interactions²³. To dissect whether proline-rich motifs and WW domains play a role in Pez degradation and Pez-Su(dx) interaction, several Su(dx) mutants and Pez mutants were constructed (Fig. 4a and Supplementary Fig. 4e). We cotransfected Su(dx) and different Pez mutants in S2 cells to check which Pez mutant can be stabilized. Finally, we found Pez-PA-PPPA mutant failed to be degraded by Su(dx) (Fig. 4b and Supplementary Fig. 4f). Furthermore, we noticed that Pez cannot be degraded by a Su(dx) truncation without WW domains (Su(dx)ΔWW) in S2 cells (Fig. 4c). In contrast, WW domains of Su(dx) exhibit a significant dominant negative activity and its co-expression stabilized Pez markedly (Fig. 4d). By co-immunoprecipitation experiments, we showed that Su(dx) WW domains are essential for Pez-Su(dx) association, as Su(dx)ΔWW does not interact with Pez (Fig. 4e). To minimize the interference of Su(dx)-induced degradation on detecting Pez-Su(dx) association, we used Su(dx) C917A mutant for the co-IP experiment to check the function of PY motif and PPPY motif of Pez. We found that PA and PPPA mutants markedly decreased the binding between Pez and Su(dx)C917A (Fig. 4f). Taken these results together, Su(dx)-induced Pez degradation depends on their physical interaction via WW domains and PY/PPPY motifs. This conclusion is also supported by the fact that Pez mutant containing PA and PPPA mutations cannot be ubiquitylated by Su(dx), compared with the wild-type Pez in S2 cells (Fig. 4g). To sum up, the binding of Pez to Su(dx) depends on PY/PPPY motifs of Pez and the WW domains of Su(dx), and is required for Su(dx)-mediated Pez degradation.

**Figure 4: Domains and motifs mediating the interaction between Su(dx) and Pez.**

To verify Pez–Su(dx) interaction in vivo, Flag-Pez or Flag-Pez-PA-PPPA was expressed either alone or together with Myc-Su(dx) in wing discs using a hh-Gal4 driver. Flag-Pez protein levels were decreased when coexpressed with Myc-Su(dx) while Flag-Pez-PA-PPPA protein levels were not affected (Supplementary Fig. 5a–d). We also checked the effect of Myc-Su(dx)ΔWW on Pez-GFP in wing discs. Overexpression of Myc-Su(dx)ΔWW by Ptc-Gal4 in wing discs did not affect Pez-GFP protein levels (Supplementary Fig. 5e). Furthermore, we used Myo1A^ts-Gal4 to express Myc-Su(dx) with Pez or Pez-PA-PPPA. Coexpression with Pez or Pez-PA-PPPA rescued the excess number of pH3-positive cells and the increase of the mRNA level of Upd3/Vn induced by Myo1A^ts-Su(dx) (Supplementary Fig. 5f,g). It is also worth noting that Pez-PA-PPPA had stronger function than Pez. Taken together, these observations suggest that the interaction between Pez and Su(dx) exists in vivo.

Kibra inhibits Su(dx)-induced degradation to stabilize Pez

We have demonstrated that WW domains of Su(dx) are required for its function in Pez degradation and its overexpression inhibited Su(dx) activity by a dominant-negative mechanism (Fig. 4c,d). Meanwhile, we noticed that Kibra, a reported Pez associated protein, also contains WW domains. Previous study showed that Kibra binds to Pez and co-localizes with Pez¹⁶. However, the function of Kibra in the Kibra–Pez complex is unclear. In our experiments, we found that Pez protein was significantly increased when Kibra is co-expressed in S2 cells (Fig. 5a). In contrast, Pez protein levels did not increase when co-expressed with a Kibra truncation that lacks WW domains (KibraΔWW), indicating that Kibra WW domains play an important role in regulating Pez stabilization. Furthermore, Kibra blocked Pez degradation induced by Su(dx) in a WW domain-dependent manner (Fig. 5a). Consistent with an earlier study, Kibra interacts with Pez in a WW domain-dependent manner (Supplementary Fig. 6a)¹⁶. Notably, we found PY and PPPY motifs were essential for the interaction between Kibra and Pez, as supported by the fact that Pez-PA-PPPA mutant was unable to bind to Kibra in vitro (Supplementary Fig. 6b,c). Accordingly, Pez-PA-PPPA mutant disrupted the co-localization between Kibra and Pez in S2 cells (Supplementary Fig. 6d,e). In addition, we knocked down Kibra in S2 cells using dsRNA to monitor the half-life of Pez. As shown in Fig. 5b,c, knockdown of Kibra accelerated the Pez turnover rate. The efficiency of Kibra knockdown is verified by a real-time PCR analysis (Supplementary Fig. 6f). Taken together, Kibra and Su(dx) antagonize each other to regulate Pez stability (Fig. 5d). Interestingly, neither Kibra nor Kibra-WW decreased the binding between Su(dx) and Pez (Supplementary Fig. 6g), suggesting Kibra may not function through competing with Su(dx) for Pez binding.

**Figure 5: Kibra stabilizes Pez in S2 cells and requires WW domains to exert this function.**

PTPN14 is degraded by overexpressed Su(dx) or WWP1

As Pez and Su(dx) have conserved homologues in mammals, we tested whether the relationship between Su(dx) and Pez is conserved in mammals. In 293T cells, we co-transfected Su(dx) with human PTPN14, the closest orthologue of Pez. We found that, expression of Su(dx), but not Su(dx)C917A, markedly decreased the protein levels of PTPN14 (Fig. 6a). Notably, PTPN14 and Su(dx) interacted with each other in 293T cells (Fig. 6b). To address whether Su(dx) homologues promote PTPN14 degradation, we co-transfected PTPN14-SFB (S-tag, Flag epitope tag, and streptavidin-binding peptide tag) with different Su(dx) homologues, WWP1, WWP2 and Itch. PTPN14 protein levels were decreased specifically when WWP1 was co-transfected (Fig. 6c). Meanwhile, the degradation of PTPN14 induced by WWP1 overexpression was partially rescued by MG132 treatment (Supplementary Fig. 7). Furthermore, WWP1–PTPN14 interaction was detected in two directions while WWP2–PTPN14 association was much weaker in one direction (Fig. 6d). These data might explain why WWP1 but not WWP2 induces obvious degradation of PTPN14. To summarize, we found overexpressed Su(dx) or its mammalian homologue WWP1 can induce degradation of PTPN14.

Discussion

Here we reported the identification of Su(dx) as an E3 ligase of Pez. Su(dx) was first identified as an E3 ligase regulating the Notch signalling pathway^17,18,24,25. But the direct substrate of Su(dx) was unclear. In the present study, we identified Pez as a Su(dx) substrate. Furthermore, we checked whether Pez regulates the Notch signalling pathway. Pez knockdown induced notched wings and a decrease of Cut in wing discs that is very similar to what have caused by Su(dx) overexpression, indicating a dysfunction of the Notch pathway (Supplementary Fig. 8a,b). However, another typical marker of the Notch pathway, wingless, was not affected by the absence of Pez (Supplementary Fig. 8c). It is possible that Pez is not a canonical regulator of the Notch pathway and Su(dx) might have other substrates under this circumstance.

According to our observations, Su(dx) overexpression in ECs only induced midgut epithelial proliferation to some extent, and it did not fully mimic the loss of pez induced phenotypes (compared Fig. 2f with Supplementary Fig. 2b). We speculate that the difference was largely due to the incomplete degradation efficiency of Pez by Su(dx) overexpression in ECs.

PTPN14 was reported as an inhibitor of YAP1 in mammalian cells. It can suppress the activity of YAP1 through retaining YAP1 in the cytoplasm and sustaining the phosphorylation state of YAP1⁸. However, in our experiments, Pez overexpression slightly upregulates Yki phosphorylation level without obvious Yki localization change in S2 cells (Supplementary Fig. 8d,e). We speculated that the mechanism of YAP regulation by PTPN14 may not be conserved in Drosophila.

Furthermore, our work present evidence that Kibra, a WW domain containing Pez partner, stabilizes Pez, providing an interesting model that WW–PY/PPxY interaction play a role in the regulation of protein stabilization (Fig. 5d). In addition, we found that other WW-containing proteins, such as Sav, were unable to stabilize Pez (Supplementary Fig. 8f). On the basis of these observations, we speculate the regulation of Pez stabilization by Su(dx) and Kibra is a specific event.

We also found that PTPN14, the human homologue of Pez, can be degraded by overexpressed Su(dx) and its human homologue WWP1. However, in the following experiments, we found WWC1, the human homologue of Kibra, did not stabilize PTPN14 (Supplementary Fig. 8g). These data suggest that, although the similar regulation of Pez/PTPN14 by degradation exists in Drosophila and mammalian cells, the detailed mechanism may vary.

It has been reported that PTPN14 sporadic mutations were found in breast cancer cells and colorectal cancer cells, indicating a potential tumour suppressor function of PTPN14. Moreover, amplification and overexpression of WWP1 has been found in breast and prostate cancers^26,27,28,29. Therefore, our study may provide new insights into cancer development. Further characterization of the relationship of Su(dx)-Pez in mice and examination of their correlation in clinical cancers may provide potential targeting therapy for cancer treatments.

Methods

Plasmids and cloning

Pez full length was cloned from BDGP DGC clone. Mutation forms of Pez (Pez-PA, Pez-PPPA, Pez-PPSGA, Pez-PA-PPPA, Pez-PA-PPSGA, Pez-PPPA-PPSGA and Pez-PA-DA) were constructed according to the standard protocol. For expression in S2 cells and flies, constructs were cloned into the pUAST-Flag vector. To compare the activities of wild-type Pez and Pez-PA-PPPA, they were cloned into pUAST-attB vector for integrating into attP target site (75B) with ClonExpress II One Step Cloning Kit (Vazyme). PTPN14-SFB plasmid was a gift from Junjie Chen lab⁸. WWP1 and WWP2 cloned into pCDNA3.1 vector from human cDNA library. Itch-HA plasmid was provided by Lin Li lab³⁰. All primers used in this study can be requested.

Primers used for mutation constructs are as following: Pez-PPPA-F(5′- cccaccgccggccgtcaatcggc -3′); Pez-PPPA-R(5′- gccgattgacggccggcggtggg -3′); Pez-PPSGA-F(5′- gccgagtggagcccgtagttctg -3′); Pez-PPSGA-R(5′- cagaactacgggctccactcggc -3′); Pez-PA-F(5′- gctcgcccggcaccagacgctgagacggcggtc -3′); Pez-PA-R(5′- cagcgtctggtgccgggcgagctgtgggcagc -3′); Su(dx)-delWW-F(5′- cagcggatgatgagggtgctccgaaggg -3′); Su(dx)-delWW-R(5′- cccttcggagcaccctcatcatccgctg -3′).

Drosophila genetics

Fly stocks used in this study are as follows: Pez¹, Pez², Pez-GFP (gift from Hugo Stocker lab)¹⁶, Su(dx)-RNAi (gift from Dahua Chen lab)³¹, UAS-Myc-Su(dx), UAS-Myc-Su(dx)C917A, UAS-Myc-Su(dx)ΔWW were generated according to standard P-element mediated transformation. Ptc-Gal4, Hh-Gal4, Diap3.5 (ref. 32), MyoAGal4; tubGal80ts, esgGal4; tubGal80ts¹⁵, Pez-RNAi (VDRC NO.30743), (Bloomington).

All genetic experiments were conducted at 25 °C unless otherwise indicated. To induce conditional expression in adult flies, tub-Gal80ts flies were maintained at 18 °C though development, and then 2–6 day-old adult females were transferred to 29 °C for 7–9 days before dissection.

Cell culture and transfection

S2 cells were cultured in Schneider’s Medium (Invitrogen) with 10% heat-inactivated fetal bovine serum, 100 U ml⁻¹ of penicillin and 100 mg ml⁻¹ of Streptomycin at 25 °C. Transfection was carried out using Lipofectamine (Invitrogen) according to the manufacturer’s instructions. The cells were harvested 48 h after transfection. Ubiquitin-Gal4 construct was co-transfected with pUAST expression vectors in S2 cells.

HEK293T cells were maintained at 37 °C in Dulbecco's Modified Eagle's Medium (DMEM) (Thermo) supplemented with 10% heat-inactivated fetal bovine serum and antibiotics with 5% CO₂. For HEK293T cell transfection, Calcium Phosphate Transfection Kit (Specialty Media) was used according to the manufacturer’s instructions.

Immunoprecipitation and immunostaining

Immunoprecipitation was carried out at 4 °C. Cells were lysed in NP-40 buffer (50 mM pH8.0 Tris-HCl, 0.1 M NaCl, 10 mM NaF, 1 mM Na₃VO₄, 1% NP40, 10% Glycerol, 1.5 mM EDTA and Protease Inhibitor Cocktail). Lysates were first incubated with 2 μg indicated antibodies for 2 h and then with 20 μl protein A/G PLUS agaros (Santa Cruz Biotechnology) for 1 h. Beads were washed three times and boiled in SDS loading buffer. All raw western blot images are shown in Supplementary Fig. 9.

For cell immunostaining, cells were washed with PBS and fixed in 4% formaldehyde in PBS buffer at room temperature for 10 min, washed with PBS buffer and then treated with PBST (PBS and 0.25% Triton X-100) for permeabilization. Cells were blocked with PBSA (PBS and 1% BSA) for 15 min and then incubated with a primary antibody for 1 h in PBSA at room temperature, and then washed with PBS and incubated with a secondary antibody diluted in PBSA for 30 min at room temperature, and finally mounted in 40% glycerol.

For imaginal disc staining and midgut staining, the third instar larvae or the adult flies from indicated genotypes were dissected. The samples were then fixed in 4% formaldehyde in PBS buffer, washed three times with PBS and incubated with primary and secondary antibodies in PBTA (PBS, 0.1% Triton X-100, and 1% BSA) buffer. 40% glycerol was used to mount the samples.

Images of cells, imaginal discs and guts were acquired with a confocal microscope (LAS SP5; Leica) using a 40 × /1.25 NA oil objective (Leica) or 63 × /1.4 NA oil objective (Leica) at room temperature. To reduce the variables in experiments involving comparison between different genotypes, all samples were stained, processed and imagined in parallel. Images were then processed, scaled and analysed using Adobe Photoshop (Adobe).

Antibodies used in this paper were as follows: mouse anti-Flag antibody (Sigma), mouse anti-Myc antibody (Santa Cruz), mouse anti-HA antibody (Sigma), mouse anti-GFP/CFP antibody (Santa Cruz), rabbit anti Pez antibody (generated by ABclonal Technology against Pez-C), Rat anti-Cubitus interruptus (Ci) antibody (Developmental Studies Hybridoma Bank, DSHB), Rabbit anti-lacZ antibody (Invitrogen), mouse anti Cut antibody (DSHB), rabbit anti-PH3 (1:300; Cell Signaling), mouse anti-Pros (1:20; DSHB), rabbit anti-dpERK (1:50; Cell Signaling) and rabbit anti-GFP (1:300; Invitrogen).

RNA interference in Drosophila S2 Cells

For RNAi in S2 cells, primers were designed as follows: kibra-dsRNA-F (5′- gaattaatacgactcactatagggagaagcgactgctttgggc -3′); kibra-dsRNA-R (5′- gaattaatacgactcactatagggagacaccgcaaagggatcg -3′);pez-dsRNA-1-F (5′- gaattaatacgactcactatagggagaactatctgaagaag -3′); pez-dsRNA-1-R (5′- gaattaatacgactcactatagggagaatgcgcagtcatatg -3′); pez-dsRNA-2-F (5′- gaattaatacgactcactatagggagacgccacgacaacatc -3′); pez-dsRNA-2-R (5′- gaattaatacgactcactatagggagagtagatgccaatcg -3′); Su(dx)-dsRNA-F (5′- gatcactaatacgactcactatagggtacatcaccctcatgacg -3′); Su(dx)-dsRNA-R (5′- gatcactaatacgactcactatagggtcattcctggcagaagcc -3′)

PCR reactions were used as templates for in vitro RNA production (in vitro Transcription T7 kit, Takara), and the RNA was purified using isopropyl-alcohol. dsRNA were then annealed (68 °C for 10 min and 37 °C for 30 min). To perform knockdown experiment, S2 cells were diluted into 1 × 10⁶ cells ml⁻¹ with serum-free medium for 1-h starvation with 15 μg ml⁻¹ dsRNA.

In vivo and in vitro ubiquitylation assay

For in vivo ubiquitylation assay, S2 cells were transfected with indicated plasmids and treated with MG132 (100 μM ml⁻¹) for 4 h before harvest. S2 cells were then lysed with 100 μl denaturing buffer (100 mM Tris-Cl pH 7.5, 10% SDS, 0.1 M DTT) and boiled for 10 min. The lysates were then diluted into 1 ml with NP40 buffer. Immunoprecipitation and western blot analysis were then carried out.

For in vitro ubiquitylation assay, GST-Pez-loaded beads purified from E. coli were incubated with 100 ng E1 (Rabbit), 200 ng E2(UbcH5c), 5 mg ubiquitin (Boston Biochem), 2 mM ATP, and E3 in 20 μl ubiquitlyation buffer (50 mM Tris-Cl pH 7.5, 5 mM magnesium chloride, 2 mM sodium fluoride, 0.6 mM DTT, 10 nM Okadaic acid) at 30°C for 2 h. E3 (Myc-Su(dx) and Myc-Su(dx)C917A) were immunoprecipitated from transfected S2 cells and eluted by Myc peptides (Sigma).

Real-time PCR

RNA was isolated from S2 cells or female midguts at age 7–9 day-old. Coding DNA was synthesized with cDNA synthesis kit (Invitrogen). RT-PCR was performed on ABI Fast 7,500 using SYBR Green (Takara). Rp49 was used as normalization control.

Primers for real-time PCR are as following: Su(dx)-qPCR-F (5′- attatggtggtgtatctc -3′); Su(dx)-qPCR-R (5′- ctgtagttgttcttgttc -3′); kibra-qPCR-F (5′- atcatcatcatcatcaac -3′); kibra-qPCR-R (5′- atctatgtaataggtcttg -3′); pez-qPCR-F (5′- gctaaccgaggatatgag -3′); pez-qPCR-R (5′- cctgatacacttggaact -3′); Vn-F (5′- tcacacatttagtggtggaagc -3′); Vn-R (5′- cgtgacctctgcgttctgt -3′); Upd3-F (5′- aaattcgacaaagtcgcctg -3′); Upd3-R (5′- ttccactggattcctggttc -3′); rp49-F (5′- cggatcgatatgctaagctgt -3′); rp49-R (5′- cgacgcactctgttgtcg -3′).

Statistical analysis

All statistical data were analysed using Student's t-test by R 2.9.0 and expressed as mean±s.e.m. Results were considered statistically significant when P<0.05.

Additional information

How to cite this article: Wang, C. et al. Suppressor of Deltex mediates Pez degradation and modulates Drosophila midgut homeostasis. Nat. Commun. 6:6607 doi: 10.1038/ncomms7607 (2015).

References

Smith, A. L. et al. Pez: a novel human cDNA encoding protein tyrosine phosphatase- and ezrin-like domains. Biochem. Biophys. Res. Commun. 209, 959–965 (1995) .
Article CAS PubMed Google Scholar
Wyatt, L., Wadham, C., Crocker, L. A., Lardelli, M. & Khew-Goodall, Y. The protein tyrosine phosphatase Pez regulates TGFbeta, epithelial-mesenchymal transition, and organ development. J. Cell Biol. 178, 1223–1235 (2007) .
Article CAS PubMed PubMed Central Google Scholar
Wyatt, L. & Khew-Goodall, Y. PTP-Pez: a novel regulator of TGFbeta signaling. Cell Cycle 7, 2290–2295 (2008) .
Article CAS PubMed Google Scholar
Au, A. C. et al. Protein tyrosine phosphatase PTPN14 is a regulator of lymphatic function and choanal development in humans. Am. J. Hum. Genet. 87, 436–444 (2010) .
Article CAS PubMed PubMed Central Google Scholar
Benzinou, M. et al. Mouse and human strategies identify PTPN14 as a modifier of angiogenesis and hereditary haemorrhagic telangiectasia. Nat. Commun. 3, 616 (2012) .
Article PubMed PubMed Central Google Scholar
Huang, J. M. et al. YAP modifies cancer cell sensitivity to EGFR and survivin inhibitors and is negatively regulated by the non-receptor type protein tyrosine phosphatase 14. Oncogene 32, 2220–2229 (2013) .
Article CAS PubMed Google Scholar
Liu, X. et al. PTPN14 interacts with and negatively regulates the oncogenic function of YAP. Oncogene 32, 1266–1273 (2013) .
Article PubMed Google Scholar
Wang, W. et al. PTPN14 is required for the density-dependent control of YAP1. Genes Dev. 26, 1959–1971 (2012) .
Article CAS PubMed PubMed Central Google Scholar
Michaloglou, C. et al. The tyrosine phosphatase PTPN14 is a negative regulator of YAP activity. PLoS ONE 8, e61916 (2013) .
Article ADS CAS PubMed PubMed Central Google Scholar
Yin, M. & Zhang, L. Hippo signaling: A hub of growth control, tumor suppression and pluripotency maintenance. J. Genet. Genomics 38, 471–481 (2011) .
Article CAS PubMed Google Scholar
Hong, W. & Guan, K. L. The YAP and TAZ transcription co-activators: key downstream effectors of the mammalian Hippo pathway. Semin. Cell Dev. Biol. 23, 785–793 (2012) .
Article CAS PubMed PubMed Central Google Scholar
Harvey, K. F., Zhang, X. & Thomas, D. M. The Hippo pathway and human cancer. Nat. Rev. Cancer 13, 246–257 (2013) .
Article CAS PubMed Google Scholar
Ohlstein, B. & Spradling, A. The adult Drosophila posterior midgut is maintained by pluripotent stem cells. Nature 439, 470–474 (2006) .
Article ADS CAS Google Scholar
Ohlstein, B. & Spradling, A. Multipotent Drosophila intestinal stem cells specify daughter cell fates by differential notch signaling. Science 315, 988–992 (2007) .
Article ADS CAS Google Scholar
Ren, F. et al. Hippo signaling regulates Drosophila intestine stem cell proliferation through multiple pathways. Proc. Natl Acad. Sci. USA 107, 21064–21069 (2010) .
Article ADS CAS Google Scholar
Poernbacher, I., Baumgartner, R., Marada, S. K., Edwards, K. & Stocker, H. Drosophila Pez acts in Hippo signaling to restrict intestinal stem cell proliferation. Curr. Biol. 22, 389–396 (2012) .
Article CAS Google Scholar
Cornell, M. et al. The Drosophila melanogaster Suppressor of deltex gene, a regulator of the Notch receptor signaling pathway, is an E3 class ubiquitin ligase. Genetics 152, 567–576 (1999) .
CAS PubMed PubMed Central Google Scholar
Fostier, M., Evans, D. A., Artavanis-Tsakonas, S. & Baron, M. Genetic characterization of the Drosophila melanogaster Suppressor of deltex gene: a regulator of notch signaling. Genetics 150, 1477–1485 (1998) .
CAS PubMed PubMed Central Google Scholar
Hori, K. et al. Drosophila deltex mediates suppressor of Hairless-independent and late-endosomal activation of Notch signaling. Development 131, 5527–5537 (2004) .
Article CAS PubMed Google Scholar
Wilkin, M. B. et al. Regulation of notch endosomal sorting and signaling by Drosophila Nedd4 family proteins. Curr. Biol. 14, 2237–2244 (2004) .
Article CAS PubMed Google Scholar
Ingham, R. J. et al. WW domains provide a platform for the assembly of multiprotein networks. Mol. Cell Biol. 25, 7092–7106 (2005) .
Article CAS PubMed PubMed Central Google Scholar
Micchelli, C. A. & Perrimon, N. Evidence that stem cells reside in the adult Drosophila midgut epithelium. Nature 439, 475–479 (2006) .
Article ADS CAS Google Scholar
Macias, M. J., Wiesner, S. & Sudol, M. W. W. and SH3 domains, two different scaffolds to recognize proline-rich ligands. FEBS Lett. 513, 30–37 (2002) .
Article CAS PubMed Google Scholar
Lai, E. C. Protein degradation: four E3s for the notch pathway. Curr. Biol. 12, R74–R78 (2002) .
Article CAS PubMed Google Scholar
Mazaleyrat, S. L. et al. Down-regulation of Notch target gene expression by Suppressor of deltex. Dev. Biol. 255, 363–372 (2003) .
Article CAS PubMed Google Scholar
Chen, C. et al. Ubiquitin E3 ligase WWP1 as an oncogenic factor in human prostate cancer. Oncogene 26, 2386–2394 (2007) .
Article CAS PubMed Google Scholar
Chen, C., Zhou, Z., Ross, J. S., Zhou, W. & Dong, J. T. The amplified WWP1 gene is a potential molecular target in breast cancer. Int. J. Cancer 121, 80–87 (2007) .
Article CAS PubMed Google Scholar
Nguyen Huu, N. S. et al. Tumour-promoting activity of altered WWP1 expression in breast cancer and its utility as a prognostic indicator. J. Pathol. 216, 93–102 (2008) .
Article CAS PubMed Google Scholar
Chen, C. et al. Overexpression of WWP1 is associated with the estrogen receptor and insulin-like growth factor receptor 1 in breast carcinoma. Int. J. Cancer 124, 2829–2836 (2009) .
Article CAS PubMed Google Scholar
Wei, W., Li, M., Wang, J., Nie, F. & Li, L. The E3 ubiquitin ligase ITCH negatively regulates canonical Wnt signaling by targeting dishevelled protein. Mol. Cell Biol. 32, 3903–3912 (2012) .
Article CAS PubMed PubMed Central Google Scholar
Wang, H., Mu, Y. & Chen, D. Effective gene silencing in Drosophila ovarian germline by artificial microRNAs. Cell Res. 21, 700–703 (2011) .
Article PubMed PubMed Central Google Scholar
Zhang, L. et al. The TEAD/TEF family of transcription factor Scalloped mediates Hippo signaling in organ size control. Dev. Cell 14, 377–387 (2008) .
Article CAS PubMed PubMed Central Google Scholar

Download references

Acknowledgements

We thank Hugo Stocker, Jin Jiang, Junjie Chen, Dahua Chen, Jiahuai Han, Weiguo Zou, the Bloomington and Vienna Stock Centers for reagents and fly stocks. This work is supported by grants from the National Basic Research Program of China (973 Program 2010CB912101,2012CB945001, 2011CB943902), from the ‘Strategic Priority Research Program’ of the Chinese Academy of Sciences, Grant No. XDA01010406, and also supported by National Natural Science Foundation of China (31171394, 31371462).

Author information

Chao Wang and Wenxiang Zhang: These authors contributed equally to this work

Authors and Affiliations

State Key Laboratory of Cell Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
Chao Wang, Wenxiang Zhang, Meng-Xin Yin, Lianxin Hu, Peixue Li, Jiajun Xu, Shimin Wang, Yi Lu, Wenqing Wu, Yun Zhao & Lei Zhang
Laboratory of Angiogenesis and Neurovascular link, Vesalius Research Center, VIB, Leuven, B-3000, Belgium
Hongling Huang
Department of Anatomy and Neurobiology, School of Medicine, Tongji University, Shanghai, 200092, China
Margaret S. Ho
State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, 200031, China
Lin Li
School of Life Science and Technology, ShanghaiTech University, Shanghai, 200120, China
Lin Li, Yun Zhao & Lei Zhang

Authors

Chao Wang
View author publications
You can also search for this author in PubMed Google Scholar
Wenxiang Zhang
View author publications
You can also search for this author in PubMed Google Scholar
Meng-Xin Yin
View author publications
You can also search for this author in PubMed Google Scholar
Lianxin Hu
View author publications
You can also search for this author in PubMed Google Scholar
Peixue Li
View author publications
You can also search for this author in PubMed Google Scholar
Jiajun Xu
View author publications
You can also search for this author in PubMed Google Scholar
Hongling Huang
View author publications
You can also search for this author in PubMed Google Scholar
Shimin Wang
View author publications
You can also search for this author in PubMed Google Scholar
Yi Lu
View author publications
You can also search for this author in PubMed Google Scholar
Wenqing Wu
View author publications
You can also search for this author in PubMed Google Scholar
Margaret S. Ho
View author publications
You can also search for this author in PubMed Google Scholar
Lin Li
View author publications
You can also search for this author in PubMed Google Scholar
Yun Zhao
View author publications
You can also search for this author in PubMed Google Scholar
Lei Zhang
View author publications
You can also search for this author in PubMed Google Scholar

Contributions

C.W., W.Z. and L.Z. conceived and designed the experiments; C.W., W.Z., L.H., P.L., J.X., H.H., S.W., Y.L. and W.W. performed the experiments; C.W., W.Z., M.-X.Y., L.L., Y.Z. and L.Z. analysed the data; L.H., P.L., J.X., H.H., S.W., Y.L., W.W., L.L. and Y. Z. contributed reagents/materials/analysis tools; C.W. M.-X.Y. M.S.H. and L.Z. wrote the paper.

Corresponding author

Correspondence to Lei Zhang.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Supplementary information

Supplementary Figures

Supplementary Figures 1-9 (PDF 9455 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wang, C., Zhang, W., Yin, MX. et al. Suppressor of Deltex mediates Pez degradation and modulates Drosophila midgut homeostasis. Nat Commun 6, 6607 (2015). https://doi.org/10.1038/ncomms7607

Download citation

Received: 30 September 2014
Accepted: 11 February 2015
Published: 27 March 2015
DOI: https://doi.org/10.1038/ncomms7607

This article is cited by

Taiman acts as a coactivator of Yorkie in the Hippo pathway to promote tissue growth and intestinal regeneration
- Chao Wang
- Meng-Xin Yin
- Lei Zhang
Cell Discovery (2016)
The Hippo pathway in intestinal regeneration and disease
- Audrey W. Hong
- Zhipeng Meng
- Kun-Liang Guan
Nature Reviews Gastroenterology & Hepatology (2016)

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.