Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Commentary
  • Published:

Sociomicrobiology in engineered landscapes

A growing body of evidence points to the importance of microcolonies in the dissemination of bacteria, yet there is a dearth of tools for systematically assessing the behavior of cells within such communities. New strategies for landscaping three-dimensional culture environments on microscopic scales may have a critical role in revealing how bacteria orchestrate antibiotic resistance and other social behaviors within small, dense aggregates.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: Ideal qualities for patterning bacterial populations in microfabricated environments.
Figure 2: Assessing bacterial behavior in protein-based microstructures.
Figure 3: Complex polymicrobial arrangements.

References

  1. Kaeberlein, T., Lewis, K. & Epstein, S.S. Science 296, 1127–1129 (2002).

    Article  CAS  Google Scholar 

  2. Loka Bharathi, P.A. in Marine Microbiology: Facets & Opportunities (ed. Ramaiah, N.) 27–35 (National Institute of Oceanography, Goa, India, 2004).

    Google Scholar 

  3. Horswill, A.R., Stoodley, P., Stewart, P.S. & Parsek, M.R. Anal. Bioanal. Chem. 387, 371–380 (2007).

    Article  CAS  Google Scholar 

  4. Donnenberg, M.S. & Whittam, T.S. J. Clin. Invest. 107, 539–548 (2001).

    Article  CAS  Google Scholar 

  5. Hense, B.A. et al. Nat. Rev. Microbiol. 5, 230–239 (2007).

    Article  CAS  Google Scholar 

  6. ten Cate, J.M. Odontology 94, 1–9 (2006).

    Article  CAS  Google Scholar 

  7. De Kievit, T.R., Gillis, R., Marx, S., Brown, C. & Iglewski, B.H. Appl. Environ. Microbiol. 67, 1865–1873 (2001).

    Article  CAS  Google Scholar 

  8. Hall-Stoodley, L. & Stoodley, P. Trends Microbiol. 13, 7–10 (2005).

    Article  CAS  Google Scholar 

  9. Carnes, E.C. et al. Nat. Chem. Biol. 6, 41–45 (2010).

    Article  CAS  Google Scholar 

  10. Boedicker, J.Q., Vincent, M. & Ismagilov, R.F. Angew. Chem. Int. Edn. Engl. 48, 5908–5911 (2009).

    Article  CAS  Google Scholar 

  11. Danino, T., Mondragon-Palomino, O., Tsimring, L. & Hasty, J. Nature 463, 326–330 (2010).

    Article  CAS  Google Scholar 

  12. Kawata, S., Sun, H.B., Tanaka, T. & Takada, K. Nature 412, 697–698 (2001).

    Article  CAS  Google Scholar 

  13. Nielson, R., Kaehr, B. & Shear, J.B. Small 5, 120–125 (2009).

    Article  CAS  Google Scholar 

  14. Kuebler, S.M. et al. J. Photopolym. Sci. Technol. 14, 657–668 (2001).

    Article  CAS  Google Scholar 

  15. Connell, J.L. et al. MBio 1, e00202–e00212 (2010).

    Article  Google Scholar 

  16. Pitts, J., Campagnola, P., Epling, G. & Goodman, S. Macromolecules 33, 1514–1523 (2000).

    Article  CAS  Google Scholar 

  17. Hill, R.T., Lyon, J.L., Allen, R., Stevenson, K.J. & Shear, J.B. J. Am. Chem. Soc. 127, 10707–10711 (2005).

    Article  CAS  Google Scholar 

  18. Kaehr, B., Allen, R., Javier, D.J., Currie, J. & Shear, J.B. Proc. Natl. Acad. Sci. USA 101, 16104–16108 (2004).

    Article  CAS  Google Scholar 

  19. Khripin, C.Y., Brinker, C.J. & Kaehr, B. Soft Matter 6, 2842–2848 (2010).

    Article  CAS  Google Scholar 

  20. Ritschdorff, E.T., Connell, J.L. & Shear, J.B. in Materials Research Society Symposium Proceedings Series vol. 1272, PP9.34 (Materials Research Society, 2010). <http://www.mrs.org/s10-abstract-pp/>

    Google Scholar 

  21. Kaehr, B. & Shear, J.B. Proc. Natl. Acad. Sci. USA 105, 8850–8854 (2008).

    Article  CAS  Google Scholar 

  22. Ramsey, M.M. & Whiteley, M. Proc. Natl. Acad. Sci. USA 106, 1578–1583 (2009).

    Article  CAS  Google Scholar 

  23. Chun, C.K., Ozer, E.A., Welsh, M.J., Zabner, J. & Greenberg, E.P. Proc. Natl. Acad. Sci. USA 101, 3587–3590 (2004).

    Article  CAS  Google Scholar 

  24. Seidlits, S.K., Schmidt, C.E. & Shear, J.B. Adv. Funct. Mater. 19, 3543–3551 (2009).

    Article  CAS  Google Scholar 

  25. Liu, X. et al. Proc. Natl. Acad. Sci. USA 108, 2668–2673 (2011).

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by grants from the US National Institutes of Health (5R01AI075068 to M.W.; 5R03AI081216 to J.B.S.) and the Welch Foundation (grant F-1331 to J.B.S.).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Marvin Whiteley or Jason B Shear.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Connell, J., Whiteley, M. & Shear, J. Sociomicrobiology in engineered landscapes. Nat Chem Biol 8, 10–13 (2012). https://doi.org/10.1038/nchembio.749

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nchembio.749

This article is cited by

Search

Quick links

Nature Briefing Microbiology

Sign up for the Nature Briefing: Microbiology newsletter — what matters in microbiology research, free to your inbox weekly.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing: Microbiology