In this issue - pv
doi:10.1038/nchembio0709-v
doi:10.1038/nchembio0709-435
Identifying and increasing access to the highest quality chemical probes will ensure their prominent position in the biological and drug discovery toolboxes.
Full Text - Perfecting probes | PDF (112 KB) - Perfecting probes
Aled M Edwards, Chas Bountra, David J Kerr & Timothy M Willson
doi:10.1038/nchembio0709-436
Abstract - Open access chemical and clinical probes to support drug discovery | Full Text - Open access chemical and clinical probes to support drug discovery | PDF (142 KB) - Open access chemical and clinical probes to support drug discovery | Supplementary information
Tudor I Oprea, Cristian G Bologa, Scott Boyer, Ramona F Curpan, Robert C Glen, Andrew L Hopkins, Christopher A Lipinski, Garland R Marshall, Yvonne C Martin, Liliana Ostopovici-Halip, Gilbert Rishton, Oleg Ursu, Roy J Vaz, Chris Waller, Herbert Waldmann & Larry A Sklar
doi:10.1038/nchembio0709-441
Abstract - A crowdsourcing evaluation of the NIH chemical probes | Full Text - A crowdsourcing evaluation of the NIH chemical probes | PDF (554 KB) - A crowdsourcing evaluation of the NIH chemical probes | Supplementary information
Stephen V Frye & Gary L Johnson
doi:10.1038/nchembio.f.11
Small-molecule inhibitors can induce phosphorylation priming of AGC kinases. Priming by ATP binding pocket conformation, rather than intrinsic kinase activity, has significant implications for drug discovery and therapeutic efficacy.
Full Text - Inhibitors paradoxically prime kinases | PDF (200 KB) - Inhibitors paradoxically prime kinases
See also: Article by Okuzumi et al.
Christian Hertweck
doi:10.1038/nchembio0709-450
Microorganisms are a major source of new therapeutics. However, the discovery and sustainable production of these compounds are often hampered owing to limited access to biosynthetic genes or products. Recent studies provide new approaches for targeting biosynthesis genes in the metagenome of complex microbial assemblages and for inducing the expression of otherwise silent biosynthesis genes.
Full Text - Hidden biosynthetic treasures brought to light | PDF (1,272 KB) - Hidden biosynthetic treasures brought to light
See also: Brief Communication by Bok et al. | Article by Fisch et al.
Dario Neri & André W Brändli
doi:10.1038/nchembio0709-452
A new methodology combining small molecules and phage-displayed peptides enables the isolation of chemically modified bicyclic peptides capable of high-affinity recognition of target proteins.
Full Text - Encoding chemistry | PDF (1,718 KB) - Encoding chemistry
See also: Article by Heinis et al.
John A Gerlt
doi:10.1038/nchembio0709-454
Westheimer's classical proposal that the decreased pKa of Lys115 in the active site of acetoacetate decarboxylase is the result of its unfavorable electrostatic juxtaposition with Lys116 has been evaluated by X-ray crystallography. The long-awaited structure reveals that Lys115 is positioned in a hydrophobic pocket that lowers its pKa.
Full Text - Acetoacetate decarboxylase: hydrophobics, not electrostatics | PDF (212 KB) - Acetoacetate decarboxylase: hydrophobics, not electrostatics
doi:10.1038/nchembio0709-456
Full Text - Research highlights | PDF (147 KB) - Research highlights
Alexey M Bogdanov, Alexander S Mishin, Ilia V Yampolsky, Vsevolod V Belousov, Dmitriy M Chudakov, Fedor V Subach, Vladislav V Verkhusha, Sergey Lukyanov & Konstantin A Lukyanov
doi:10.1038/nchembio.174

Abstract - Green fluorescent proteins are light-induced electron donors | Full Text - Green fluorescent proteins are light-induced electron donors | PDF (274 KB) - Green fluorescent proteins are light-induced electron donors | Supplementary information | Chemical compounds
Jin Woo Bok, Yi-Ming Chiang, Edyta Szewczyk, Yazmid Reyes-Dominguez, Ashley D Davidson, James F Sanchez, Hsien-Chun Lo, Kenji Watanabe, Joseph Strauss, Berl R Oakley, Clay C C Wang & Nancy P Keller
doi:10.1038/nchembio.177

Abstract - Chromatin-level regulation of biosynthetic gene clusters | Full Text - Chromatin-level regulation of biosynthetic gene clusters | PDF (617 KB) - Chromatin-level regulation of biosynthetic gene clusters | Supplementary information | Chemical compounds
See also: News and Views by Hertweck
Masanori Matsuura, Yoko Saikawa, Kosei Inui, Koichi Nakae, Masayuki Igarashi, Kimiko Hashimoto & Masaya Nakata
doi:10.1038/nchembio.179

Abstract - Identification of the toxic trigger in mushroom poisoning | Full Text - Identification of the toxic trigger in mushroom poisoning | PDF (212 KB) - Identification of the toxic trigger in mushroom poisoning | Supplementary information | Chemical compounds
Aimee Shen, Patrick J Lupardus, Victoria E Albrow, Andrew Guzzetta, James C Powers, K Christopher Garcia & Matthew Bogyo
doi:10.1038/nchembio.178

Abstract - Mechanistic and structural insights into the proteolytic activation of : Vibrio cholerae: MARTX toxin | Full Text - Mechanistic and structural insights into the proteolytic activation of Vibrio cholerae MARTX toxin | PDF (830 KB) - Mechanistic and structural insights into the proteolytic activation of Vibrio cholerae MARTX toxin | Supplementary information | Chemical compounds
Jérôme Hert, John J Irwin, Christian Laggner, Michael J Keiser & Brian K Shoichet
doi:10.1038/nchembio.180

Abstract - Quantifying biogenic bias in screening libraries | Full Text - Quantifying biogenic bias in screening libraries | PDF (307 KB) - Quantifying biogenic bias in screening libraries | Supplementary information | Chemical compounds
Tatsuya Okuzumi, Dorothea Fiedler, Chao Zhang, Daniel C Gray, Brian Aizenstein, Randy Hoffman & Kevan M Shokat
doi:10.1038/nchembio.183

Abstract - Inhibitor hijacking of Akt activation | Full Text - Inhibitor hijacking of Akt activation | PDF (621 KB) - Inhibitor hijacking of Akt activation | Supplementary information | Chemical compounds
See also: News and Views by Frye & Johnson
Katja M Fisch, Cristian Gurgui, Nina Heycke, Sonia A van der Sar, Sally A Anderson, Victoria L Webb, Stefan Taudien, Matthias Platzer, Brent K Rubio, Sarah J Robinson, Phillip Crews & Jörn Piel
doi:10.1038/nchembio.176

Abstract - Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting | Full Text - Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting | PDF (619 KB) - Polyketide assembly lines of uncultivated sponge symbionts from structure-based gene targeting | Supplementary information | Chemical compounds
See also: News and Views by Hertweck
Christian Heinis, Trevor Rutherford, Stephan Freund & Greg Winter
doi:10.1038/nchembio.184

Abstract - Phage-encoded combinatorial chemical libraries based on bicyclic peptides | Full Text - Phage-encoded combinatorial chemical libraries based on bicyclic peptides | PDF (500 KB) - Phage-encoded combinatorial chemical libraries based on bicyclic peptides | Supplementary information | Chemical compounds
See also: News and Views by Neri & Brändli
Susan M Hancock, Jamie R Rich, Matthew E C Caines, Natalie C J Strynadka & Stephen G Withers
doi:10.1038/nchembio.191

Abstract - Designer enzymes for glycosphingolipid synthesis by directed evolution | Full Text - Designer enzymes for glycosphingolipid synthesis by directed evolution | PDF (329 KB) - Designer enzymes for glycosphingolipid synthesis by directed evolution | Supplementary information | Chemical compounds
This Challenge is looking for novel approaches to analyzing changes at a single-cell level. This is...
This Challenge is looking for novel approaches to protein and nucleic acid detection. This is an Id...
