In this issue - pv
doi:10.1038/nchembio0209-v
doi:10.1038/nchembio0209-61
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Full Text - A very good place to start | PDF (131 KB) - A very good place to start
Kai Johnsson
doi:10.1038/nchembio0209-63
Autofluorescent proteins have become indispensable in our quest to visualize molecular events in living cells. Further progress in the visualization and quantification of all biochemical activities of the cell will require the introduction of additional and complementary methods for sensing and probing biomolecules. Here I highlight some of the areas where the development of new probes and labeling methods is eagerly awaited and where chemical biologists could make important contributions.
Full Text - Visualizing biochemical activities in living cells | PDF (1,196 KB) - Visualizing biochemical activities in living cells
Maja Köhn & Carsten Schultz
doi:10.1038/nchembio0209-66
Chemical biology is well defined at its core—chemistry helping to answer biological questions—yet the boundaries are rather fuzzy. What are the differences between chemical biology and pharmacology? Is intracellular imaging a branch of chemical biology, and what about screening libraries? At Chemical Biology 2008, held in Heidelberg in October, participants heard presentations covering all these topics and more.
Full Text - Chemical biologists gather in Heidelberg | PDF (1,528 KB) - Chemical biologists gather in Heidelberg
Emre Dikici & Sylvia Daunert
doi:10.1038/nchembio0209-70
Monomeric fluorescent proteins that change their emission characteristics as they mature have been successfully used to study the spatial and temporal dynamics of lysosome-associated membrane protein type 2A. This methodology provides a new means of studying cellular events in a dynamic mode.
Full Text - Fluorescent timers shine a light on protein trafficking | PDF (419 KB) - Fluorescent timers shine a light on protein trafficking
See also: Article by Subach et al.
Kalyan Banda, Gagandeep Kang & Ajit Varki
doi:10.1038/nchembio0209-71
Rotaviruses have been designated as 'sialidase sensitive' or 'sialidase insensitive', based on how their entry into cells is affected by treating cells with sialidases. A new study uses multiple methods, including saturation transfer difference NMR spectroscopy, to elucidate interesting interactions involving terminal and internal sialic acid moieties, concluding that 'sialidase insensitive' does not mean 'sialic acid independent'.
Full Text - 'Sialidase sensitivity' of rotaviruses revisited | PDF (129 KB) - 'Sialidase sensitivity' of rotaviruses revisited
See also: Brief Communication by Haselhorst et al.
Niles Lehman
doi:10.1038/nchembio0209-73
The 'RNA World' hypothesis presupposes the existence of a catalytic RNA that can polymerize nucleotide triphosphates to replicate a template, but such chemistry has not previously been detected in natural ribozymes. Detailed investigation of the products of a bacterial self-splicing group I intron now suggest that such ribozymes indeed exist in nature.
Full Text - A ghost in the RNA machine | PDF (152 KB) - A ghost in the RNA machine
See also: Brief Communication by Vicens & Cech
Jing-Ruey J Yeh & Randall T Peterson
doi:10.1038/nchembio0209-74
Wnt signals are seemingly ubiquitous in biology, controlling processes as diverse as bristle patterning in flies and tissue regeneration in humans. A new report describes the discovery of small molecules that inhibit Wnt signaling by two unprecedented mechanisms, paving the way for fundamental studies and perhaps improved treatment of colon cancer.
Full Text - Novel Wnt antagonists target porcupine and Axin | PDF (524 KB) - Novel Wnt antagonists target porcupine and Axin
See also: Article by Chen et al.
Herbert Waldmann
doi:10.1038/nchembio0209-76
Syntheses of natural product–like compound libraries with high scaffold diversity have proven hard to develop. A strategy employing metathesis cascades to 'zip up' a set of unsaturated building blocks differently connected by variable linkers demonstrates that over 80 distinct scaffold classes can be synthesized in one go.
Full Text - Killing 84 birds with one stone | PDF (172 KB) - Killing 84 birds with one stone
Martin D Burke
doi:10.1038/nchembio0209-77
Access to new analogs of the tetracycline family of antibiotics has thus far been limited to compounds that can be prepared by modification of the isolable natural products. An efficient total-synthesis pathway with extraordinary flexibility has now made it possible to identify new tetracycline derivatives with activity against a wide range of antibiotic-resistant bacteria.
Full Text - Flexible tetracycline synthesis yields promising antibiotics | PDF (138 KB) - Flexible tetracycline synthesis yields promising antibiotics
doi:10.1038/nchembio0209-80
Full Text - Research highlights | PDF (639 KB) - Research highlights
Debbie J Chang & Karlene A Cimprich
doi:10.1038/nchembio.139

Abstract - DNA damage tolerance: when it's OK to make mistakes | Full Text - DNA damage tolerance: when it's OK to make mistakes | PDF (626 KB) - DNA damage tolerance: when it's OK to make mistakes
Thomas Haselhorst, Fiona E Fleming, Jeffrey C Dyason, Regan D Hartnell, Xing Yu, Gavan Holloway, Kim Santegoets, Milton J Kiefel, Helen Blanchard, Barbara S Coulson & Mark von Itzstein
doi:10.1038/nchembio.134

Abstract - Sialic acid dependence in rotavirus host cell invasion | Full Text - Sialic acid dependence in rotavirus host cell invasion | PDF (315 KB) - Sialic acid dependence in rotavirus host cell invasion | Supplementary information | Chemical compounds
See also: News and Views by Banda et al.
Maria G Mason, Mark Shepherd, Peter Nicholls, Paul S Dobbin, Kathryn S Dodsworth, Robert K Poole & Chris E Cooper
doi:10.1038/nchembio.135

Abstract - Cytochrome : bd: confers nitric oxide resistance to : Escherichia coli | Full Text - Cytochrome bd confers nitric oxide resistance to Escherichia coli | PDF (230 KB) - Cytochrome bd confers nitric oxide resistance to Escherichia coli | Supplementary information | Chemical compounds
Quentin Vicens & Thomas R Cech
doi:10.1038/nchembio.136

Abstract - A natural ribozyme with 3[prime],5[prime] RNA ligase activity | Full Text - A natural ribozyme with 3',5' RNA ligase activity | PDF (274 KB) - A natural ribozyme with 3',5' RNA ligase activity | Supplementary information | Chemical compounds
See also: News and Views by Lehman
Baozhi Chen, Michael E Dodge, Wei Tang, Jianming Lu, Zhiqiang Ma, Chih-Wei Fan, Shuguang Wei, Wayne Hao, Jessica Kilgore, Noelle S Williams, Michael G Roth, James F Amatruda, Chuo Chen & Lawrence Lum
doi:10.1038/nchembio.137

Abstract - Small molecule-mediated disruption of Wnt-dependent signaling in tissue regeneration and cancer | Full Text - Small molecule–mediated disruption of Wnt-dependent signaling in tissue regeneration and cancer | PDF (681 KB) - Small molecule–mediated disruption of Wnt-dependent signaling in tissue regeneration and cancer | Supplementary information | Chemical compounds
See also: News and Views by Yeh & Peterson
Sarah A Scott, Paige E Selvy, Jason R Buck, Hyekyung P Cho, Tracy L Criswell, Ashley L Thomas, Michelle D Armstrong, Carlos L Arteaga, Craig W Lindsley & H Alex Brown
doi:10.1038/nchembio.140

Abstract - Design of isoform-selective phospholipase D inhibitors that modulate cancer cell invasiveness | Full Text - Design of isoform-selective phospholipase D inhibitors that modulate cancer cell invasiveness | PDF (746 KB) - Design of isoform-selective phospholipase D inhibitors that modulate cancer cell invasiveness | Supplementary information | Chemical compounds
Fedor V Subach, Oksana M Subach, Illia S Gundorov, Kateryna S Morozova, Kiryl D Piatkevich, Ana Maria Cuervo & Vladislav V Verkhusha
doi:10.1038/nchembio.138

Abstract - Monomeric fluorescent timers that change color from blue to red report on cellular trafficking | Full Text - Monomeric fluorescent timers that change color from blue to red report on cellular trafficking | PDF (781 KB) - Monomeric fluorescent timers that change color from blue to red report on cellular trafficking | Supplementary information
See also: News and Views by Dikici & Daunert
This Challenge is looking for novel approaches to analyzing changes at a single-cell level. This is...
This Challenge is looking for novel approaches to protein and nucleic acid detection. This is an Id...
