In this issue - pv
doi:10.1038/nchembio0807-v
doi:10.1038/nchembio0807-433
High-throughput screening has become increasingly important in academic research over the last decade. The diversity of chemical and biological space being probed by academic chemical screening, coupled with the public reporting of results, has created an important new resource of data for chemical biologists.
Full Text - The academic pursuit of screening | PDF (1,417 KB) - The academic pursuit of screening
Nigel J Fullwood
doi:10.1038/nchembio0807-435
Full Text - Neural stem cells, acetylcholine and Alzheimer's disease | PDF (1,355 KB) - Neural stem cells, acetylcholine and Alzheimer's disease
Michael P Robertson
doi:10.1038/nchembio0807-437
Full Text - Stanley Miller 1930–2007 | PDF (1,378 KB) - Stanley Miller 1930–2007
James Inglese, Caroline E Shamu & R Kiplin Guy
doi:10.1038/nchembio0807-438
Publications reporting results of small-molecule screens are becoming more common as academic researchers increasingly make use of high-throughput screening (HTS) facilities. However, no standards have been formally established for reporting small-molecule screening data, and often key information important for the evaluation and interpretation of results is omitted in published HTS protocols. Here, we propose concise guidelines for reporting small-molecule HTS data.
Full Text - Reporting data from high-throughput screening of small-molecule libraries | PDF (1,531 KB) - Reporting data from high-throughput screening of small-molecule libraries
Anang A Shelat & R Kiplin Guy
doi:10.1038/nchembio0807-442
The chemical scaffolds from which screening libraries are built have strong influence on the libraries' utility for screening campaigns. Here we present analysis of the scaffold composition of several types of commercially available screening collections and compare those compositions to those of drugs and drug candidates.
Full Text - Scaffold composition and biological relevance of screening libraries | PDF (5,744 KB) - Scaffold composition and biological relevance of screening libraries
Tudor I Oprea, Alexander Tropsha, Jean-Loup Faulon & Mark D Rintoul
doi:10.1038/nchembio0807-447
The increasing availability of data related to genes, proteins and their modulation by small molecules has provided a vast amount of biological information leading to the emergence of systems biology and the broad use of simulation tools for data analysis. However, there is a critical need to develop cheminformatics tools that can integrate chemical knowledge with these biological databases and simulation approaches, with the goal of creating systems chemical biology.
Full Text - Systems chemical biology | PDF (1,540 KB) - Systems chemical biology
Terry L. Sheppard
doi:10.1038/nchembio0807-451
A new division of The Scripps Research Institute that is dedicated to biomedical research and drug discovery is taking shape on the shores of southern Florida.
Full Text - Scripps Florida | PDF (1,394 KB) - Scripps Florida
Karen N Allen
doi:10.1038/nchembio0807-452
Assigning function to uncharacterized enzymes discovered through genome projects has provided a great challenge to the fields of informatics, enzymology and structural biology. Docking potential ligands into flexible models of protein structures and docking potential high-energy intermediates, rather than substrates, into known structures are two new computational approaches that have provided a much-needed boost to the field.
Full Text - Form finds function | PDF (3,002 KB) - Form finds function
See also: Letter by Song et al.
Lucien Bettendorff
doi:10.1038/nchembio0807-454
The physiological significance of thiaminase II has escaped our understanding for many years. The recent discovery of a new thiamine salvage pathway shows that this enzyme is involved in the regeneration of precursors for thiamine biosynthesis.
Full Text - At the crossroad of thiamine degradation and biosynthesis | PDF (3,882 KB) - At the crossroad of thiamine degradation and biosynthesis
See also: Letter by Jenkins et al.
Paul Workman & Marissa V Powers
doi:10.1038/nchembio0807-455
Chemical probes reveal Hsp90 to be a key molecule for the control of apoptosis in small-cell lung cancer—with important implications for Hsp90 biology and cancer treatment.
Full Text - Chaperoning cell death: a critical dual role for Hsp90 in small-cell lung cancer | PDF (3,014 KB) - Chaperoning cell death: a critical dual role for Hsp90 in small-cell lung cancer
See also: Article by Rodina et al.
David A Hopwood
doi:10.1038/nchembio0807-457
Sequencing of the genome of a newly isolated marine actinomycete has revealed the potential to make a gamut of interesting compounds with potential as therapeutic agents. Deep-sea environments may yield new chemical structures not found in microbes from traditional terrestrial habitats.
Full Text - Therapeutic treasures from the deep | PDF (2,788 KB) - Therapeutic treasures from the deep
doi:10.1038/nchembio0807-459
Full Text - Research Highlights | PDF (1,413 KB) - Research Highlights
Anne E Carpenter
doi:10.1038/nchembio.2007.15

Abstract - Image-based chemical screening | Full Text - Image-based chemical screening | PDF (1,997 KB) - Image-based chemical screening
James Inglese, Ronald L Johnson, Anton Simeonov, Menghang Xia, Wei Zheng, Christopher P Austin & Douglas S Auld
doi:10.1038/nchembio.2007.17

Abstract - High-throughput screening assays for the identification of chemical probes | Full Text - High-throughput screening assays for the identification of chemical probes | PDF (2,440 KB) - High-throughput screening assays for the identification of chemical probes | Supplementary information
Joshua A V Blodgett, Paul M Thomas, Gongyong Li, Juan E Velasquez, Wilfred A van der Donk, Neil L Kelleher & William W Metcalf
doi:10.1038/nchembio.2007.9

Abstract - Unusual transformations in the biosynthesis of the antibiotic phosphinothricin tripeptide | Full Text - Unusual transformations in the biosynthesis of the antibiotic phosphinothricin tripeptide | PDF (1,579 KB) - Unusual transformations in the biosynthesis of the antibiotic phosphinothricin tripeptide | Supplementary information | Chemical compounds
Ling Song, Chakrapani Kalyanaraman, Alexander A Fedorov, Elena V Fedorov, Margaret E Glasner, Shoshana Brown, Heidi J Imker, Patricia C Babbitt, Steven C Almo, Matthew P Jacobson & John A Gerlt
doi:10.1038/nchembio.2007.11

First Paragraph - Prediction and assignment of function for a divergent : N: -succinyl amino acid racemase | Full Text - Prediction and assignment of function for a divergent N-succinyl amino acid racemase | PDF (1,680 KB) - Prediction and assignment of function for a divergent N-succinyl amino acid racemase | Supplementary information | Chemical compounds
See also: News and Views by Allen
Amy Haas Jenkins, Ghislain Schyns, Sébastien Potot, Guangxing Sun & Tadhg P Begley
doi:10.1038/nchembio.2007.13

First Paragraph - A new thiamin salvage pathway | Full Text - A new thiamin salvage pathway | PDF (1,529 KB) - A new thiamin salvage pathway | Supplementary information | Chemical compounds
See also: News and Views by Bettendorff
Anna Rodina, Maria Vilenchik, Kamalika Moulick, Julia Aguirre, Joungnam Kim, Anne Chiang, Julie Litz, Cristina C Clement, Yanlong Kang, Yuhong She, Nian Wu, Sara Felts, Peter Wipf, Joan Massague, Xuejun Jiang, Jeffrey L Brodsky, Geoffrey W Krystal & Gabriela Chiosis
doi:10.1038/nchembio.2007.10

Abstract - Selective compounds define Hsp90 as a major inhibitor of apoptosis in small-cell lung cancer | Full Text - Selective compounds define Hsp90 as a major inhibitor of apoptosis in small-cell lung cancer | PDF (1,890 KB) - Selective compounds define Hsp90 as a major inhibitor of apoptosis in small-cell lung cancer | Supplementary information | Chemical compounds
See also: News and Views by Workman & Powers
Nicole-Claudia Meisner, Martin Hintersteiner, Kurt Mueller, Roman Bauer, Jan-Marcus Seifert, Hans-Ulrich Naegeli, Johannes Ottl, Lukas Oberer, Christian Guenat, Serge Moss, Nathalie Harrer, Maximilian Woisetschlaeger, Christof Buehler, Volker Uhl & Manfred Auer
doi:10.1038/nchembio.2007.14

Abstract - Identification and mechanistic characterization of low-molecular-weight inhibitors for HuR | Full Text - Identification and mechanistic characterization of low-molecular-weight inhibitors for HuR | PDF (1,888 KB) - Identification and mechanistic characterization of low-molecular-weight inhibitors for HuR | Supplementary information | Chemical compounds
The Seeker is looking for methods to optimize sub-cellular localization tags for protein expression....
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