Introduction
JNK1/2/3 are the downstream component of one of the major mitogen-activated protein kinase (MAPK) cascades, also comprising the extracellular-signal-regulated kinases 1 and 2 (ERK1/2) and p38(
/
/
/
) cascades8, 9, 10. Generally, activation of JNK (and p38) is associated with induction of apoptosis, whereas activation of ERK is linked to cell growth and survival8, 9, 10. MAPKs are activated by phosphorylation by MAPK kinases (MAPKKs), which in turn are activated through phosphorylation by MAPKK kinases (MAPKKKs). To understand the basis for the Gadd45
control of JNK signalling, we examined whether Gadd45
physically interacted with kinases in these cascades8, 9, 10. Haemagglutinin (HA)-tagged kinases were transiently expressed in 293 cells, alone or in combination with Flag-tagged Gadd45
, and associations were assessed by combined immunoprecipitation and western blot assays. Gadd45
bound to ASK1, but not to other MAPKKKs capable of interacting with TRAF2 (ref. 8; Fig. 1a, left), a factor required for JNK activation by TNF
11. As reported previously12, Gadd45
also associated with MEKK4/MTK1, a MAPKKK that instead is not induced by TNF
8, 13. Notably, Gadd45
interacted strongly with MKK7/JNKK2, but not with the other JNK kinase, MKK4/JNKK1, the p38-specific activators MKK3b and MKK6, the ERK kinase, MEK-1, or MAPKs8, 9, 10 (Fig. 1a, middle and right, and Fig. 1b). Gadd45
interactions were confirmed in vitro. Glutathione S-transferase (GST)–Gadd45
, but not GST alone, precipitated a large fraction of the MKK7 input (Fig. 1c), whereas it absorbed only a small fraction of ASK1 or MEKK4. Hence, Gadd45
interacts with JNK-inducing kinases and most avidly with MKK7.
Figure 1: Gadd45
physically interacts with kinases in the JNK pathway.
(a, b) Western blots with anti-Flag immunoprecipitates (top) or total lysates (middle and bottom) from 293 cells, showing association of Gadd45
with ASK1, MEKK4 and MKK7. (c) GST pull-down assays using GST- or GST–Gadd45
-coated beads and 35S-labelled in-vitro-translated proteins. 40% of the inputs are shown.
Next, we examined whether the association of Gadd45
with these kinases had functional consequences in vivo. Remarkably, whereas in I
B
M-Hygro 3DO control clones3 TNF
activated MKK7 strongly, this activation was abolished in clones expressing Gadd45
(Fig. 2a). Gadd45
also blocked induction of MKK7 by stress stimuli (see Supplementary Information, Figs. S1a, b). Inhibition was specific, as Gadd45
had no effect on induction of other MAPKKs (that is, MKK4, MKK3/6, and MEK1/2) by either treatment with TNF
, or 12-O-tetradecanoylphorbol-13-acetate (TPA) and ionomycin (T/I; Figs. 2b and 2c, respectively). ASK1 and MEKK1 were activated weakly by TNF
, as shown previously14, 15, and similarly, this activation was unaffected by Gadd45
(Fig. 2b). Thus, Gadd45
selectively blocked induction of MKK7 phosphorylation/activity by TNF
.
Figure 2: Gadd45
and NF-
B specifically inhibit MKK7 in vivo.
Western blots with antibodies against phosphorylated (P) or total kinases, and kinase assays (K.A.) showing MAPKK and MAPKKK activation by TNF
or T/I in I
B
M-Hygro and I
B
M-Gadd45
clones (a–c) and in Neo and I
B
M 3DO clones (d, e). In a and d, MKK7 phosphorylation (P-MKK7) was monitored by combined immunoprecipitation (anti-P-MKK7 antibodies) and western blotting (anti-total MKK7 antibodies). Non-specific (n.s.) bands are indicated. In b, Kinase-dead (KD)-MKK7 is the MKK7 mutant, K149M.
Previously, we have shown that Gadd45
mediates the suppression of JNK signalling by NF-
B3. Indeed, MKK7 was also inhibited by NF-
B (Fig. 2d). Whereas in control 3DO clones (Neo), MKK7 activation by TNF
returned to basal levels by 40 min (mirroring the JNK response3), this activation remained sustained in NF-
B null clones (I
B
M). MKK7 down-regulation correlated with Gadd45
induction by NF-
B (data not shown). Furthermore, NF-
B did not inhibit MKK4, MKK3/6 or MEK1/2 (Figs. 2d and 2e), thereby recapitulating the effects of Gadd45
on MAPK cascades. Indeed, Gadd45
was up-regulated by T/I in Neo, but not in I
B
M, clones (see Supplementary Information Fig. S1c; see also Fig. 3a, bottom right).
Figure 3: Gadd45
is a direct inhibitor of MKK7.
(a) Immunoprecipitations followed by western blots, showing physical association between endogenous Gadd45
and MKK7 (top) in 3DO cells treated with T/I (2 h) or left untreated (Un). Protein levels are shown (bottom). (b, g) Coomassie brilliant blue staining, showing purity of the proteins used in c–e. Size markers (S.M.) are indicated. (c) In vitro pull-down assays with purified proteins, showing direct physical interaction between His6/T7–Gadd45
and GST–MKK7. Precipitated GST proteins and bound His6/T7-tagged proteins were visualized with Coomassie (CS) and by western blotting with anti-T7 antibodies, respectively. Inputs of His6/T7-tagged proteins are indicated. The fraction of His6/T7–Gadd45
and His6/T7–JIP1 binding to GST–MKK7 was calculated relative to a standard curve generated from known protein concentrations17. (d, e) Kinase assays showing specific inhibition of active MKK7 by purified GST–Gadd45
and His6–Gadd45
in vitro. Flag-tagged kinases were immunoprecipitated from 293 cells treated with TNF
(10 min) or left untreated and pre-incubated with the indicated concentrations of Gadd45
polypeptides. (f) Western blots showing exogenous kinase levels in 293 cells.
Importantly, an interaction between endogenous Gadd45
and MKK7 was detected readily (Fig. 3a). Anti-Gadd45
antibodies16 co-immunoprecipitated MKK7 from T/I-treated 3DO cells exhibiting strong Gadd45
expression (Fig. 3a, bottom right), but not from untreated cells lacking detectable Gadd45
. MKK7 was present at comparable levels in stimulated and unstimulated cells (Fig. 3a, bottom left) and was not co-precipitated by isotype-matched control antibodies (data not shown). The interaction was confirmed by using anti-MKK7 antibodies for immunoprecipitation and the anti-Gadd45
antibody for western blots (Fig. 3a, top right). Anti-MEKK1 antibodies failed to co-precipitate Gadd45
, further demonstrating the specificity of the MKK7–Gadd45
association. To determine whether Gadd45
binds to MKK7 directly, we used purified recombinant proteins (Fig 3b). Purified GST–MKK7 or GST were incubated in vitro with increasing amounts of purified His6–Gadd45
or control His6–JIP1 (ref. 17), and the fraction of His6-tagged polypeptides binding to GST proteins was visualized by western blotting. His6–Gadd45
associated specifically with GST–MKK7 (Fig. 3c), and this association was tighter than that of the physiological MKK7 regulator, JIP1 (refs 8, 10), with half-maximal binding (HMB) values of
390 nM for Gadd45
and >650 nM for JIP1 (Fig. 3c, left; note that JIP1 was used under non-saturating conditions). We conclude that endogenous Gadd45
and MKK7 associate through direct, high-affinity contact.
Thus, we examined whether Gadd45
inhibited active MKK7 in vitro. Flag–MKK7 was immunoprecipitated from TNF
-treated or untreated 293 cells, and kinase assays were performed in the presence of purified His6–Gadd45
, GST–Gadd45
or control proteins (Fig. 3d; see also Fig. 3g). Both Gadd45
polypeptides, but neither GST nor His6–EF3 (ref. 18), blocked phosphorylation of GST–JNK1 by MKK7 in a dose-dependent manner (Fig. 3d). Of note, MKK7 auto-phosphorylation was also blocked (data not shown). Consistent with the in vivo findings (Fig. 2), the inhibitory activity of Gadd45
was specific. In fact, even at high concentrations, this factor did not hamper MKK4, MKK3b or ASK1 (despite its ability to bind to ASK1 in overexpression studies; Fig. 3e; see also Fig. 3f, total levels). Hence, Gadd45
is a potent and specific inhibitor of MKK7. Indeed, the effects of Gadd45
on TNF
-induced MKK7 phosphorylation (see Fig. 2a, middle) may be caused by inhibition of the ability of MKK7 to autophoshorylate (data not shown) and/or to function as a substrate for upstream kinases. Nevertheless, this effect seems to be independent of ASK1, as Gadd45
does not interfere with MKK7 phosphorylation by this MAPKKK, either in vivo or in vitro (Figs. 2b and 3e, respectively; ASK1). Altogether, the findings identify MKK7 as a target of Gadd45
, and in fact, of NF-
B. Of interest, MKK7 is a selective activator of JNK8, 10. Furthermore, its ablation abolishes JNK activation by TNF
7 and rescues RelA null cells from TNF
-induced killing19. Thus, blockade of MKK7 is alone sufficient to explain the effects of Gadd45
on JNK signalling; that is, its specific and near-complete suppression of this signalling3.
Gadd45
shares no homology with phosphatases and is not known to have enzymatic activity. Furthermore, we have found no evidence of such activity (data not shown). Thus, to understand mechanisms of kinase inactivation, we mapped the Gadd45
-binding region(s) of MKK7 using sets of amino- and carboxy-terminally truncated MKK7 polypeptides (see Supplementary Information Fig. S2a, c, respectively). MKK7 (63–401), MKK7 (91–401) and MKK7 (132–401) bound to GST–Gadd45
specifically and with affinity comparable to that of full-length MKK7, whereas mutants starting between amino acids 157 and 213 interacted weakly with GST–Gadd45
(see Supplementary Information, Fig. S2b). Ablation of a region extending to or beyond residue 232 abolished binding. Analysis of C-terminal truncations confirmed the presence of a Gadd45
-interaction domain between residues 141 and 161 (see Supplementary Information, Fig. S2d; compare MKK7(1–140) and MKK7(1-161)), but failed to identify the C-terminal binding region identified above, suggesting that Gadd45
interacts with this latter region more weakly. Hence, MKK7 contacts Gadd45
through two distinct regions located within residues 132–161 and 213–231 (hereafter referred to as regions A and B, respectively).
To define more precisely the interaction regions and determine whether they are sufficient for binding, we tested the association of Gadd45
with overlapping peptides spanning these regions (Fig. 4a). As shown in Fig. 4b, both region A and B bound to GST–Gadd45
, even when isolated from the context of MKK7, and peptides 132–156 and 220–234 (that is, peptides 1 and 7, respectively; see Fig. 4c) were sufficient to recapitulate this binding. Interestingly, both peptides are found within the MKK7 kinase domain8, and peptide 1 spans the ATP-binding site, Lys 149, required for catalytic function8, 20, suggesting that Gadd45
inactivates MKK7 by masking critical residues. To clarify this issue, we generated alanine-scanning mutations across peptide 1 (Fig. 4c). As shown in Fig. 4d, residues 133–140, and to a lesser extent 145–152, seemed crucial for the interaction with Gadd45
(peptide 1 and Ala-I, Ala-II, Ala-IV and Ala-V mutants; compare inputs and bound fractions). Furthermore, the association of Gadd45
with peptide 1 and with MKK7 itself, but not with peptide 7, was inhibited by ATP in a dose-dependent manner (Fig. 4e), suggesting that Gadd45
and ATP binding to MKK7 are sterically incompatible. This is reminiscent of the mechanism by which p27KIP1 inhibits cyclin-dependent kinase 2 (Cdk2; ref. 21).
Figure 4: Gadd45
blocks MKK7 by contacting a peptidic region in its catalytic domain.
(a) Schematic representation of the MKK7 peptides used for binding assays. Interaction regions are in grey. (b, d, e) GST pull-downs showing binding of GST–Gadd45
to the indicated 35S-labelled, in-vitro-translated MKK7 products. 40% of the inputs are shown in b and d. In e, ATP was used as indicated. (c) Amino-acid sequence of Gadd45
-interacting peptides 1 and 7, and the peptide 1 mutants used in d. Lys 149 is marked by an asterisk. Amino acids involved in binding to Gadd45
are in grey; darkness of shading correlates with their apparent relevance to this binding. (f) Kinase assay (K.A.), showing that binding to peptidic region 1 is required for MKK7 inactivation by Gadd45
. Flag–MKK7 was immunoprecipitated from 293 cells treated with TNF
for 10 min.
Thus, we examined whether MKK7, Gadd45
-binding peptides interfered with the Gadd45
inhibitory activity. Indeed, peptide 1 prevented MKK7 inactivation by Gadd45
, whereas peptide 7 or control peptides did not (Fig. 4f). Consistently, only peptide 1 was capable of disrupting the MKK7–Gadd45
interaction in vitro (see Supplementary Information, Fig. S2e). Hence, in the context of full-length MKK7, peptide 7 is seemingly insufficient or unavailable for contacting Gadd45
. We conclude that kinase inactivation by Gadd45
requires contact with region A, but not with region B, and most probably involves blockade of the MKK7 access to ATP.
These data predict that preventing MKK7 inhibition by Gadd45
in vivo should sensitize cells to TNF
-induced apoptosis. To test this hypothesis, MKK7-mimicking peptides were fused to a cell-permeable HIV-TAT peptide22 and transduced into cells. As shown in Supplementary Information Figs S3a–d, peptides entered cells with equivalent efficiency. Remarkably, peptide 1 markedly increased susceptibility of I
B
M-Gadd45
cells to TNF
-induced killing, whereas dimethyl sulphoxide (DMSO)-treated cells were resistant to this killing, as expected3 (Fig. 5a, left; see also Supplementary Information Fig. S4a). Other peptides, including peptide 7, had no effect on the apoptotic response to TNF
. Importantly, peptide 1 exhibited marginal basal toxicity (see Supplementary Information, Fig. S4a, left) indicating that its effect was specific for cytokine stimulation. Further linking the in vivo effect of peptide 1 to Gadd45
, the pro-apoptotic activity of Ala mutant peptides correlated with their apparent binding affinity for Gadd45
in vitro (Figs 4d and 5a, right; see also Supplementary Information Fig. S3c–e).
Figure 5: Gadd45
-mediated suppression of MKK7 is required to block TNF
-induced apoptosis.
(a, b) Apoptosis assays, showing that peptide 1 effectively promotes cytotoxicity by TNF
in I
B
M-Gadd45
and Neo 3DO clones, respectively. Amino-acid sequence of the mutant peptides can be found in Supplementary Information, Fig. S3e. (c, d) Apoptosis assays, showing that both peptide 1 and peptide 2 can facilitate TNF
-induced killing in wild-type MEFs, and that only peptide 2 can promote this killing in Gadd45
null MEFs, respectively. MEFs were from twin embryos and were used at passage 4 (p4). In a–d, values (expressed as arbitrary units) were obtained by subtracting background values of untreated cells from values of TNF
-treated cells, and represent the mean (
standard deviation) of three experiments.
Consistent with the notion that MKK7 is a target of NF-
B (Figs. 2d and 2e), peptide 1 promoted TNF
-induced killing in NF-
B-proficient cells (Neo; Fig. 5b; see also Supplementary Information Fig. S4b), which are normally refractory to this killing2, 3. As observed with Gadd45
-expressing clones, this peptide exhibited minimal toxicity in untreated cells (Supplementary Information Fig. S4b), and mutation of residues required for interaction with Gadd45
abolished its effects on TNF
cytotoxicity (Fig. 5b, right). Together, the findings demonstrate that Gadd45
halts the JNK cascade by inhibiting MKK7 and causally links the Gadd45
protective activity to this inhibition. Furthermore, blockade of MKK7 is crucial to the suppression of apoptosis by NF-
B, and this blockade is mediated, at least in part, by induction of Gadd45
.
A recent report suggested that ablation of Gadd45
does not affect TNF
-induced programmed cell death in mouse embryonic fibroblasts (MEFs)23, as might have been expected from our data. Thus, we tested the effects of MKK7-derived peptides in these cells. Surprisingly, cytokine-induced toxicity was enhanced by both peptide 1 and peptide 2 in wild-type fibroblasts, whereas other peptides had no effect on this toxicity (Fig. 5c and data not shown; see also Supplementary Information, Fig. S4c). This contrasts with our observations in 3DO lymphoid cells, where only peptide 1 promoted killing by TNF
(Fig. 5b). As peptide 2 does not bind to Gadd45
(Figs. 4b and 4d), its pro-apoptotic activity may be caused by displacement of other inhibitory factor(s) from MKK7.
Consistently, the activity of peptide 2 was retained (and, in fact, enhanced) in gadd45
-/- MEFs (Fig 5d; see also Supplementary Information, Fig. S4d). Remarkably, however, Gadd45
ablation rendered these cells completely insensitive to the cytotoxic effects of peptide 1, indicating that in wild-type fibroblasts these effects were caused by inactivation of Gadd45
. Together, these findings demonstrate that the MKK7 inhibitory mechanism activated in response to TNF
is tissue-specific (shown by the distinct effects of MKK7 peptides in 3DO cells and fibroblasts; Figs 5b-d), and that, at least in MEFs, this mechanism is functionally redundant. These findings also provide compelling evidence that Gadd45
is required to antagonize TNF
-induced killing (Fig. 5c). Indeed, the apparent lack of apoptotic phenotype previously reported in gadd45
-/- fibroblasts23 seems to be caused by activation of compensatory mechanisms in these cells, mechanisms that are not mounted during acute Gadd45
inactivation by peptide 1.
Here we have identified a mechanism for the control of JNK signalling by Gadd45
. Gadd45
associates tightly with MKK7 and inhibits its enzymatic activity by contacting critical residues in the catalytic domain; this inhibition is crucial for the suppression of TNF
-induced apoptosis. Interactions with other kinases do not seem relevant to Gadd45
-mediated control of JNK activation and programmed cell death by TNF
, as MEKK4 is not involved in TNF receptor signalling8, 13, and ASK1 is seemingly unaffected by Gadd45
(Figs. 2b and 3e). Indeed, peptides that interfere with binding of Gadd45
to MKK7 inhibit the Gadd45
protective activity against TNF
(Figs 4f, 5a, 5c, and 5d; also see Supplementary Information, Fig. S2e). Importantly, the targeting of MKK7 is critical for suppression of apoptosis by NF-
B itself. NF-
B-deficient cells fail to down-modulate MKK7 induction by TNF
(Fig. 2d), and MKK7-mimicking peptides hinder the ability of NF-
B to block cytokine-induced killing (Figs. 5b and 5c). Our data are consistent with a model whereby NF-
B activation induces expression of Gadd45
, which in turn inhibits MKK7, resulting in the suppression of JNK signalling and ultimately in apoptosis triggered by TNF
. These findings identify a crucial molecular link between the NF-
B and JNK pathways. Indeed, the relevance of this link is underscored by knockout studies showing that Gadd45
is essential for blocking TNF
-induced apoptosis (Figs 5c, d; also F.Z., S.P. & G.F., unpublished observations). In some tissues, however, other NF-
B-inducible factors might contribute to suppress induction of MKK7 by TNF
(Figs. 5c and 5d).
Chronic inflammatory conditions such as rheumatoid arthritis and inflammatory bowel disease are driven by a positive feedback loop created by mutual activation of TNF
and NF-
B24, 25, 26. Furthermore, several malignancies depend on NF-
B for their survival1, a process that might involve suppression of JNK signalling5. Our data suggest that blockade of the NF-
B ability to shut down MKK7 may promote apoptosis of self-reactive/pro-inflammatory cells and, perhaps, of cancer cells, thereby identifying the MKK7–Gadd45
interaction as a potential therapeutic target. Interestingly, pharmacological compounds that disrupt binding of Gadd45
to MKK7 might uncouple anti-apoptotic and pro-inflammatory functions of NF-
B, and so circumvent the potent immunosuppressive side-effects observed with global NF-
B blockers1, 5, 24, 26, currently used to treat these illnesses. The pro-apoptotic activity of MKK7 peptides in NF-
B-proficient cells implies that NF-
B-inducible factors target MKK7 through, or in proximity to, its Gadd45
-binding surface, thereby proving in principle the validity of this therapeutic approach.
Methods
Plasmids.
pcDNA-HA-GCKR, pCEP-HA-MEKK1, pcDNA-HA-ASK1, pCMV5-HA-MEKK3, pCMV5-HA-MEKK4, pcDNA-HA-MEK1, pMT3-HA-MKK4, pSR
-HA-JNK1, pMT2T-HA-JNK3, pcDNA-HA-ERK1, pSR
-HA-ERK2, pcDNA-Flag-p38
, pcDNA-Flag-p38
, pcDNA-Flag-p38
and pcDNA-Flag-p38
were provided by A. Leonardi, H. Ichijo, J. Landry, R. Vaillancourt, P. Vito, T.H. Wang, J. Wimalasena, and H. Gram. pcDNA-HA-Gadd45
, pGEX-JNK1, pET28-His6/T7-JIP1 (expressing the MKK7-binding domain of JIP1b), and pProEx-1.His6-EF3 (expressing edema factor 3) were described previously16, 17, 18, 27. All other Flag- or HA-coding constructs were generated using pcDNA (Invitrogen, Carlsbad, CA). For bacterial expression, sub-clonings were in the following vectors: His6/T7–Gadd45
(Figs. 3b and 3c) in pET-28 (Novagen, Madison, WI); His6–Gadd45
(Fig. 3d, e and g) in pProEx-1.H6 (ref. 18); GST–p38
, GST–MKK7, GST–KD–MKK7 (containing the K149M mutation; Fig. 2b), and GST–Gadd45
in pGEX (Amersham, Piscataway, NJ). To prime in vitro transcription/translations, we generated: pBluescript(BS)-MEKK4, pBS-ASK1 and pBS-MKK7 (Fig. 1c); pBS-based plasmids expressing N-terminal truncations or polypeptidic fragments of human MKK7 (see Supplementary Information, Fig. S2a and Fig. 4a, respectively), or peptide 1 point mutants (Fig. 4c). To enhance radiolabelling, short peptidic fragments were expressed fused to enhanced green fluorescent protein (eGFP; Clontech, Palo Alto,CA). ASK11–757 (encoding amino acids 1–757 of ASK1; Fig. 1c) and C-terminal MKK7 truncations (see Supplementary Information, Fig. S2c) were obtained by linearizing pBS-ASK1 and pBS-MKK7, respectively, with appropriate restriction enzymes. Detailed cloning information will be provided upon request. All clonings were confirmed by sequencing and appropriate restriction digestion.
Peptide intracellular incorporation, treatments and apoptosis assays.
3DO clones were described previously3. Treatments were as follows: murine TNF
(Peprotech, Rock Hill, NJ), 1,000 U ml-1 (Figs. 2a, b, d and 5b; see also Supplementary Information, Fig. S4b), 10 U ml-1 (Fig. 5a and see Supplementary Information, Fig. S4a), or 1,000 U ml-1 plus 0.3
g ml-1 cycloheximide (CHX; Fig. 5c, d; also see Supplementary Information, Fig. S4c, d); human TNF
(Peprotech), 2,000 U ml-1 (Figs. 3d–f and 4f); TPA plus ionomycin (Sigma, St Louis, MO), 100 ng ml-1 and 1
M, respectively (Figs 2c, e, 3a; also see Supplementary Information, Fig. S1c). Treatments with H2O2 and sorbitol were as described previously3 (see Supplementary Information Fig. S1a, b). In Fig. 5a, b, and in Supplementary Information Fig. S4a, b, pre-treatment with HIV-TAT peptides (5
M) or DMSO was for 30 min and incubation with TNF
was for an additional 4 and 3.5 h, respectively. In Fig. 5c, d, and in Supplementary Information Fig. S4c, d, peptides were used at 10
M and incubation with TNF
was for 4 h. Apoptosis was measured by using the Cell Death Detection ELISAPLUS kit (Roche, Basel Switzerland). To assess intracellular incorporation, peptides were labeled with FITC either at the N terminus during synthesis (see Supplementary Information, Fig. S3a, b) or after HPLC purification by using the FluoReporter FITC protein labelling kit (Molecular Probes, Eugene, OR; see Supplementary Information, Fig. S3c, d). Cells were incubated with 5
M FITC-labelled peptides for 20 min, subjected to trypsinization, washed three times with PBS and examined by flow cytometry (FCM) or confocal microscopy.
Generation of gadd45
-/- fibroblasts.
Gadd45
null mice were generated with the help of the Transgenic and Knockout facility at the University of Chicago by using embryonic stem cells and standard homologous recombination-based technology. MEFs were isolated from mouse embryos at day 14 post-coitum. Generation and characterization of gadd45
-/- mice and fibroblast lines will be described elsewhere (F.Z., S.P. & G.F., unpublished observations).
Binding assays, protein purification and kinase assays.
GST precipitations with in-vitro-translated proteins (Figs. 1c, 4b, 4d, and 4e, and Supplementary Information Fig. S2b, d and e) or purified proteins (Fig. 3c), and kinase assays, were performed as described previously6, 17, 27, 28, 29, 30. In Fig. 4e, ATP pre-incubation was for 20 min. His6/T7–Gadd45
, His6/T7–JIP1, His6–Gadd45
, His6–EF3 and GST proteins were purified from bacterial lysates as detailed elsewhere17, 18, 28, and dialysed against buffer A17 (Fig. 3b, c) or 5 mM sodium phosphate buffer (pH 7.6; Figs. 3d, 3e, 3g and 4f). Kinase pre-incubation with recombinant proteins was for 10 min (Figs. 3d, 3e and 4f), and GST–Gadd45
pre-incubation with synthetic peptides or DMSO (-) was for an additional 20 min (Fig. 4f and Supplementary Information Fig. S2e). MKK7 phosphorylation was monitored by immunoprecipitation with anti-P-MKK7 antibodies (developed at Cell Signalling, Beverly, MA) before western blotting with anti-total MKK7 antibodies. For co-immunoprecipitations, extracts were prepared in immunoprecipitation buffer12.
Antibodies.
The anti-MKK7 antibodies were: Fig. 2a and 2d and Supplementary Information Fig. S1a and S1b, kinase assays (goat; Santa Cruz Biotechnology, Santa Cruz, CA); Figs 2a, 2d, and 3a, bottom left, and Supplementary Information Figs. S1a and S1b, western blots, and Fig. 3a, top right, immunoprecipitations (rabbit; Santa Cruz); Fig. 3a, top left, western blot (mouse monoclonal; BD Pharmingen, San Diego, CA). Other antibodies were: anti-Flag from Sigma; anti-P-MKK4, anti-P-MKK3/6, anti-P-MEK1/2, anti-total MKK3 and anti-total MEK1/2 from Cell Signalling; anti-T7 from Novagen; anti-HA, anti-total MKK4, anti-total ASK1 (kinase assays and western blots), and anti-total MEKK1 (kinase assays, western blots, and co-immunoprecipitations) from Santa Cruz. The anti-Gadd45
monoclonal antibody (5D2.2) was described elsewhere16.
Note: Supplementary Information is available on the Nature Cell Biology website.

