Research abstract

Article abstract


Nature Biotechnology 22, 841 - 847 (2004)
Published online: 20 June 2004 | doi:10.1038/nbt986

Engineered riboregulators enable post-transcriptional control of gene expression

Farren J Isaacs1,2,3,4, Daniel J Dwyer1,2,5, Chunming Ding2,3, Dmitri D Pervouchine1,2, Charles R Cantor2,3,4 & James J Collins1,2,3,4


Recent studies have demonstrated the important enzymatic, structural and regulatory roles of RNA in the cell. Here we present a post-transcriptional regulation system in Escherichia coli that uses RNA to both silence and activate gene expression. We inserted a complementary cis sequence directly upstream of the ribosome binding site in a target gene. Upon transcription, this cis-repressive sequence causes a stem-loop structure to form at the 5'–untranslated region of the mRNA. The stem-loop structure interferes with ribosome binding, silencing gene expression. A small noncoding RNA that is expressed in trans targets the cis-repressed RNA with high specificity, causing an alteration in the stem-loop structure that activates expression. Such engineered riboregulators may lend insight into mechanistic actions of endogenous RNA-based processes and could serve as scalable components of biological networks, able to function with any promoter or gene to directly control gene expression.

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  1. Center for BioDynamics, Boston University, 44 Cummington Street, Boston, Massachusetts 02215, USA.
  2. Center for Advanced Biotechnology, Boston University, 44 Cummington Street, Boston, Massachusetts 02215, USA.
  3. Bioinformatics Program, Boston University, 44 Cummington Street, Boston, Massachusetts 02215, USA.
  4. Department of Biomedical Engineering, Boston University, 44 Cummington Street, Boston, Massachusetts 02215, USA.
  5. Department of Biology, Boston University, 44 Cummington Street, Boston, Massachusetts 02215, USA.

Correspondence to: James J Collins1,2,3,4 e-mail: jcollins@bu.edu



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