Journal home
Advance online publication
Current issue
Archive
Press releases
Supplements
Focuses
Conferences
Guide to authors
Online submissionOnline submission
Permissions
For referees
Free online issue
Contact the journal
Subscribe
Advertising
work@npg
naturereprints
About this site
For librarians
 
NPG Resources
Bioentrepreneur
Nature Reviews Drug Discovery
Nature
Nature Medicine
Nature Genetics
Nature Reviews Genetics
Nature Methods
Nature Chemical Biology
news@nature.com
Clinical Pharmacology & Therapeutics
Nature Conferences
NPG Subject areas
Biotechnology
Cancer
Chemistry
Clinical Medicine
Dentistry
Development
Drug Discovery
Earth Sciences
Evolution & Ecology
Genetics
Immunology
Materials Science
Medical Research
Microbiology
Molecular Cell Biology
Neuroscience
Pharmacology
Physics
Browse all publications
Research Article
Nature Biotechnology  14, 309 - 314 (1996)
doi:10.1038/nbt0396-309

Human Antibodies with Sub-nanomolar Affinities Isolated from a Large Non-immunized Phage Display Library

Tristan J. Vaughan*, Andrew J. Williams1, Kevin Pritchard1, Jane K. Osbourn1, Anthony R. Pope1, John C. Earnshaw1, John McCafferty1, Regina A. Hodits2, Jane Wilton1 & Kevin S. Johnson1

  1Cambridge Antibody Technology Ltd., Unit B3, The Science Park, Melbourn, Cambridgeshire, SG8 6JJ, U.K.

  2Centre of Protein Engineering, MRC, Hills Road, Cambridge CB2 2QH, U.K

  *Corresponding author Cambridge Antibody Technology Ltd., Unit B3, The Science Park, Melbourn, Cambridgeshire, SG8 6JJ, U.K.

To generate a stable resource from which high affinity human antibodies to any given antigen can be rapidly isolated, functional V-gene segments from 43 non-immunized human donors were used to construct a repertoire of 1.4 times 1010 single-chain Fv (scFv) fragments displayed on the surface of phage. Fragments were cloned in a phagemid vector, enabling both phage displayed and soluble scFv to be produced without subcloning. A hexahistidine tag has been incorporated to allow rapid purification of scFv by nickel chelate chromatography. This library format reduces the time needed to isolate monoclonal antibody fragments to under two weeks. All of the measured binding affinities show a Kd < 10 nM and off-rates of 10-3 to 10-4s-1, properties usually associated with antibodies from a secondary immune response. The best of these scFvs, an anti-fluorescein antibody (0.3 nM) and an antibody directed against the hapten DTPA (0.8 nM), are the first antibodies with subnanomoiar binding affinities to be isolated from a naive library. Antibodies to doxorubicin, which is both immunosuppressive and toxic, as well as a high affinity and high specificity antibody to the steroid hormone oestradiol have been isolated. This work shows that conventional hybridoma technology may be superseded by large phage libraries that are proving to be a stable and reliable source of specific, high affinity human monoclonal antibodies.

REFERENCES
  1. Winter, G. and Milstein, C. 1991. Man-made antibodies. Nature 349: 293−9. | Article | PubMed  | ISI | ChemPort |
  2. Jones, P.T., Dear, P.H., Foote, J., Neuberger, M.S. and Winter, G. 1986. Replacing the complementarity-determining regions in a human antibody with those from a mouse. Nature 321: 522−5. | PubMed  | ISI | ChemPort |
  3. Riechmann, L., Clark, M., Waldmann, H. and Winter, G. 1988. Reshaping human antibodies for therapy. Nature 332: 323−7. | Article | PubMed  | ISI | ChemPort |
  4. Isaacs, J., Watts, R.A., Hazleman, B.L., Hale, G., Keogan, M.T., Cobbold, S.P. and Waldmann, H. 1992. Humanised monoclonal antibody therapy for rheumatoid arthritis. Lancet 26: 748−752. | Article |
  5. McCafferty, J., Griffiths, A.D., Winter, G. and ChiswelL, D.J. 1990. Phage antibodies: filamentous phage displaying antibody variable domains. Nature 348: 552−4. | Article | PubMed  | ISI | ChemPort |
  6. Johnson, K. and ChiswelL, D.J. 1993. Human antibody engineering. Current Opinion in Structural Biology 3: 564−571. | Article | ISI | ChemPort |
  7. Winter, G., Griffiths, A.D., Hawkins, R.E. and Hoogenboom, H.R. 1994. Making antibodies by phage display technology. Annu. Rev. Immunol. 12: 433−455. | Article | PubMed  | ISI | ChemPort |
  8. Marks, J.D. et al. 1991. By-passing immunization: Human antibodies from V-gene libraries displayed on phage. J. Mol. Biol. 222: 581−597. | PubMed  | ISI | ChemPort |
  9. Griffiths, A.D. et al. 1993. Human anti-self antibodies with high specificity from phage display libraries. EMBO J. 12: 725−734. | PubMed  | ISI | ChemPort |
  10. Perelson, A.S. and Oster, G.F. 1979. Theoretical studies of clonal selection: Minimial antibody repertoire size and reliability of self non-self discrimination. J. Theor. Biol. 81: 645−670. | PubMed  | ISI | ChemPort |
  11. De Kruif, J., BoeL, E. and Logtenberg, T. 1995. Selection and application of human single chain Fv antibody fragments from a semi-synthetic phage antibody display library with designed CDR3 regions. J. Mol. Biol. 248: 97−105. | Article | PubMed  | ChemPort |
  12. Marks, J.D. et al. 1992. By-passing immunization: building high affinity human antibodies by chain shuffling. Bio/Technology 10: 779−783. | PubMed  | ISI | ChemPort |
  13. Gherardi, E. and Milstein, C. 1992. Original and artificial antibodies. Nature 357: 201−202. | Article | PubMed  | ISI | ChemPort |
  14. Waterhouse, P., Griffiths, A.D., Johnson, K.S. and Winter, G. 1993. Combinatorial infection and in vivo recombination: a strategy for making large phage antibody repertoires. Nucleic Acids Research 21: 2265−66. | PubMed  | ISI | ChemPort |
  15. Griffiths, A.D. et al. 1994. Isolation of high affinity human antibodies directly from large synthetic repertoires. EMBO J. 13: 3245−3260. | PubMed  | ISI | ChemPort |
  16. Tomlinson, I.M., Walter, G., Marks, J.D., Llewelyn, M.B. and Winter, G. 1992. The repertoire of human germline VH sequences reveals about fifty groups of VH segments with different hypervariable loops. J. Mol. Biol. 227: 776−798. | PubMed  | ISI | ChemPort |
  17. Cox, J.P.L., Tomlinson, I.M. and Winter, G. 1994. A directory of human germline Vk segments reveals a strong bias in their usage. Eur. J. Immunol. 24: 827−836. | PubMed  | ISI | ChemPort |
  18. Williams, S.C. and Winter, G. 1993. Cloning and sequencing of human immunoglobulin VI segments. Eur. J. Immunol. 23: 1456−61. | PubMed  | ISI | ChemPort |
  19. Clackson, T., Hoogenboom, H.R., Griffiths, A.D. and Winter, G. 1991. Making antibody fragments using phage display libraries. Nature 352: 624−628. | Article | PubMed  | ISI | ChemPort |
  20. Rixon, M.W., Gourlie, B.B., Kaplan, D.A., Schlom, J. and S., M.P. 1993. Preferential use of a H chain V region in antitumour-associated glycoprotein-72 monoclonal antibodies. The Journal of Immunology 151: 6559−6568. | PubMed  | ChemPort |
  21. Hodits, R.A. et al. 1995. An antibody fragment from a phage display library competes for ligand binding to the low density lipoprotein receptor family and inhibits rhinovirus infection. The Journal of Biological Chemistry 270: 24078−24085. | Article | PubMed  | ChemPort |
  22. Foote, J. and Milstein, C. 1991. Kinetic maturation of an immune response. Nature 352: 530−532. | Article | PubMed  | ISI | ChemPort |
  23. Hawkins, R.E., RusselL, S.J. and Winter, G. 1992. Selection of phage antibodies by binding affinity: mimicking affinity maturation. J. Mol. Biol. 226: 889−896. | PubMed  | ISI | ChemPort |
  24. Gram, H. et al. 1992. In vitro selection and affinity maturation of antibodies from a naive combinatorial immunoglobulin library. Proc. Natl. Acad. Sci. USA 89: 3576−3580. | PubMed  | ChemPort |
  25. Huston, J.S. et al. 1993. Medical applications of single-chain antibodies. Intern. Rev. Immunol. 10: 195−217. | ChemPort |
  26. Bedzyk, W.D., Reinitz, D.M. and Voss, E.W. 1986. Linkage of low and high affinity anti-fluorescein idiotype families. Molec. Immunol. 23: 1319−1328. | Article | ISI | ChemPort |
  27. Boxer, G.M., Abassi, A.M., Pedley, R.B. and Begent, R.H. 1994. Localisation of monoclonal antibodies reacting with different epitopes on carcinoembryonic antigen (CEA)—implications for targeted therapy. Brit J. Cancer 69: 307−314. | PubMed  | ISI | ChemPort |
  28. Chester, K.A., Begent, R.H., Robson, L., Keep, P., Pedley, R.B. et al. 1994. Phage libraries for generation of clinically useful antibodies. Lancet 343: 455−456. | Article | PubMed  | ISI | ChemPort |
  29. Foote, J. and Eisen, H.N. 1995. Kinetic and affinity limits on antibodies produced during immune responses. Proc. Natl. Acad. Sci. USA 92: 1254−1256. | PubMed  | ChemPort |
  30. Beisiegel, U., Schneider, W.J., Goldstein, J.L., Anderson, R.G. and Brown, M.S. 1981. Monoclonal antibodies to the low density lipoprotein receptor as probes for study of receptor mediated endocytosis and the genetics of familial hypercholes-terolemia. J. Biol. Chem. 256: 11923−11931. | PubMed  | ChemPort |
  31. Hawkins, R.E. and Winter, G. 1992. Cell selection strategies for making anytibod-ies from variable gene libraries: trapping the memory pool. Eur. J. Immunol. 22: 867−870. | PubMed  | ISI | ChemPort |
  32. Barbas, C.R., Bjorling, E., Chiodi, R., Dunlop, N., Cabara, D. et al. 1992. Recombinant human Fab fragments neutralize type I immunodefficiency virus in vitro. Proc. Natl. Acad. Sci. USA 89: 9339−9343. | PubMed  | ChemPort |
  33. Barbas, C.R., Collet, T.A., Amberg, W., Roben, P., Binley, J.M. et al. 1993. Molecular profile of an antibody response to HIV-1 as probed by combinatorial libraries. J. Mol. Biol. 230: 812−823. | Article | PubMed  | ISI | ChemPort |
  34. Barbas, C.R., Crowe, J.E., Cabab, D., Jones, T.M., Zebedee, S.L. et al. 1992. Human monoclonal Fab fragments derived from a combinatorial library bind to respiratory syncytial virus F glycoprotein and neutralise infectivity. Proc. Natl. Acad. Sci. USA 89: 10164−10168. | PubMed  | ChemPort |
  35. Williamson, R.A., Burioni, R., Sanna, P.P. and Partridge, L.J. 1993. Human monoclonal antibodies against a plethora of viral pathogens from single combinatorial libraries. Proc. Natl. Acad. Sci. USA 90: 4141−4145. | PubMed  | ChemPort |
  36. McCafferty, J. et al. 1994. Selection and rapid purification of murine antibody fragments that bind a transition-state analog by phage display. Appl. Biochem. Biotech. 47: 157−173. | ISI | ChemPort |
  37. Huston, J.S. et al. 1988. Protein engineering of antibody binding sites: recovery of specific activity in an anti-digoxin single-chain Fv analogue produced in Escherichia coli. Proc. Natl. Acad. Sci. USA 85: 5879−83. | PubMed  | ChemPort |
  38. Munro, S. and Pelham, H.R.B. 1986. An hsp70-like protein in the ER: identity with the 78kd glucose-regulated protein and immunoglobulin heavy chain binding protein. Cell 46: 291−300. | Article | PubMed  | ISI | ChemPort |
  39. Friguet, B., Chaffotte, A.R. Djavadi-Ohaniance, L., and Goldberg, M.E. 1985. Measurements of the true affinity constant in solution of antigen-antibody complexes by enzyme-linked immunosorbent assay. J. Immunol. Methods 77: 305−319. | Article | PubMed  | ISI | ChemPort |
  40. Goldberg, M.E. and Djavadi-Ohaniance, L. 1993. Methods for measurement of antibody/antigen affinity based on ELISA and RIA. Cum Op. Immunol. 5: 278−281. | Article | ChemPort |
  41. Cook, G.P. et al. 1994. A map of the human immunoglobulin VH locus completed by analysis of the telomeric region of chromosome 14q. Nature Genet. 7: 162−168. | Article | PubMed  | ISI | ChemPort |
  42. Tomlinson, I.M. et al. 1994. Human immunoglobulin VH and D segments on chromosomes 15q11.2 and 16p11.2. Human Molec. Genet. 3: 853−860. | ISI | ChemPort |
  43. Kabat, E.A., Wu, T.T., Perry, H.M., Gottesman, K.S. and Foeller, C. Sequences of proteins of immunological interest (U.S. Department of Health and Human Services, 1991).
  44. Chuchana, P. et al. 1990. Definition of the human immunoglobulin variable lambda (IGLV) gene subgroups. Eur. J. Immunol. 20: 1317−25. | PubMed  | ISI | ChemPort |
 Top
 Top
Abstract
Previous | Next
Table of contents
Download PDFDownload PDF
Send to a friendSend to a friend
Save this linkSave this link

Open Innovation Challenges

naturejobs

References
Export citation
Export references
natureproducts

Search buyers guide:

 
ADVERTISEMENT
 
Nature Biotechnology
ISSN: 1087-0156
EISSN: 1546-1696
Journal home | Advance online publication | Current issue | Archive | Press releases | Supplements | Focuses | Conferences | For authors | Online submission | Permissions | For referees | Free online issue | About the journal | Contact the journal | Subscribe | Advertising | work@npg | naturereprints | About this site | For librarians
Nature Publishing Group, publisher of Nature, and other science journals and reference works©1996 Nature Publishing Group | Privacy policy