Table of Contents

Volume 528 Number 7581 pp163-300

10 December 2015

About the cover

Scanning electron microscopy images of the mechanosensory organs (or ‘hair’) found on the back of wild-type fruit flies (left). Disruption of asymmetric Sara endosome segregation in a sensitized mutant background changes the cellular fate of stem cells producing these bristles and the back of the fly is then naked (right). Asymmetric cell division in which a cell produces two daughter cells with different cellular fates, is a fundamental process common to stem cells in development and beyond. Many fate determinants are partitioned at the cell cortex during asymmetric division, and in a range of cells, a subset of signalling endosomes segregates unequally in the cytoplasm to mediate the distribution of Notch/Delta signalling molecules between the daughter cells. How this asymmetric distribution is achieved was unknown. Marcos Gonzalez-Gaitan and colleagues now show that, during asymmetric division, central spindle asymmetry is generated by the kinesin Klp10A and its antagonist Patronin, which in turn polarizes the direction of endosome motility. The authors were able to direct the endosome to the wrong cell by inverting the central spindle polarity using an antibody-mediated approach. The system described here is one that can target intracellular cargoes in general, and signalling endosomes in particular, to one of the daughter cells during asymmetric division.

This Week

Editorials

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  • Fetal tissue research under threat

    The US Senate has just voted to defund one of the providers of aborted fetal tissue for research. Such research is too valuable to become embroiled in the bitter abortion debate.

  • Stem the tide

    Japan has introduced an unproven system to make patients pay for clinical trials.

  • Future-proofing

    Hard decisions on issues that will affect future generations should not be sidestepped.

World View

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Seven Days

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    News in Focus

    Features

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    • The truth about fetal tissue research

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      The use of aborted fetal tissue has sparked controversy in the United States, but many scientists say it is essential for studies of HIV, development and more.

      • Meredith Wadman
    • Cachexia: The last illness

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      Researchers are gaining insight into the causes of a devastating form of muscle wasting that is often the final stage of cancer and other diseases.

      • Corie Lok

    comment

    Books and Arts

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    • History: A mathematical revolutionary

      Davide Castelvecchi reviews a hefty biography of the prolific Enlightenment luminary Leonhard Euler.

      • Review of Leonhard Euler: Mathematical Genius in the Enlightenment
        Ronald S. Calinger
    • Books in brief

      Barbara Kiser reviews five of the week's best science picks.

    • Education: How to win at evolution

      Stuart West and helpers compare the cut and thrust of three games that explore life's greatest competition.

      • Review of Evolution, Terra Evolution: Tree of Life and Evolution: Random Mutations

    Careers

    Features

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    Q&As

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    naturejobs job listings and advertising features

    Futures

    • One of me

      Unintended consequences.

      • Taryn Heintz

    Specials

    Technology Feature

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    • Micromanagement with light

      The optogenetics techniques that have long been used in neuroscience are now giving biologists the power to probe cellular structures with unprecedented precision.

      • Amber Dance

    research

    Articles

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    • Undecidability of the spectral gap

      • Toby S. Cubitt
      • David Perez-Garcia
      • Michael M. Wolf

      The spectral gap problem—whether the Hamiltonian of a quantum many-body problem is gapped or gapless—is rigorously proved to be undecidable; there exists no algorithm to determine whether an arbitrary quantum many-body model is gapped or gapless, and there exist models for which the presence or absence of a spectral gap is independent of the axioms of mathematics.

    • Signal integration by Ca2+ regulates intestinal stem-cell activity

      • Hansong Deng
      • Akos A. Gerencser
      • Heinrich Jasper

      Drosophila intestinal stem cells (ISCs) respond to changes in diet, particularly L-glutamate levels, by modulating Ca2+ signalling to adapt their proliferation rate; furthermore, Ca2+ is shown to be central to the response of ISCs to a wide range of dietary and stress stimuli.

    • The histone chaperone CAF-1 safeguards somatic cell identity

      • Sihem Cheloufi
      • Ulrich Elling
      • Barbara Hopfgartner
      • Youngsook L. Jung
      • Jernej Murn
      • Maria Ninova
      • Maria Hubmann
      • Aimee I. Badeaux
      • Cheen Euong Ang
      • Danielle Tenen
      • Daniel J. Wesche
      • Nadezhda Abazova
      • Max Hogue
      • Nilgun Tasdemir
      • Justin Brumbaugh
      • Philipp Rathert
      • Julian Jude
      • Francesco Ferrari
      • Andres Blanco
      • Michaela Fellner
      • Daniel Wenzel
      • Marietta Zinner
      • Simon E. Vidal
      • Oliver Bell
      • Matthias Stadtfeld
      • Howard Y. Chang
      • Genevieve Almouzni
      • Scott W. Lowe
      • John Rinn
      • Marius Wernig
      • Alexei Aravin
      • Yang Shi
      • Peter J. Park
      • Josef M. Penninger
      • Johannes Zuber
      • Konrad Hochedlinger

      RNA interference screens were used to identify chromatin-associated factors that impede reprogramming of somatic cells into iPS cells; suppression of the chromatin assembly factor CAF-1 enhances the generation of iPS cells by rendering chromatin more accessible to pluripotency transcription factors.

    • Molecular structures of unbound and transcribing RNA polymerase III

      • Niklas A. Hoffmann
      • Arjen J. Jakobi
      • María Moreno-Morcillo
      • Sebastian Glatt
      • Jan Kosinski
      • Wim J. H. Hagen
      • Carsten Sachse
      • Christoph W. Müller

      RNA polymerase III (Pol III), the largest eukaryote polymerase yet characterized, transcribes structured small non-coding RNAs; here cryo-electron microscopy structures of budding yeast Pol III allow building of an atomic-level model of the complete 17-subunit complex, both unbound and while elongating RNA.

      See also

    Letters

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    • Sublimation in bright spots on (1) Ceres

      • A. Nathues
      • M. Hoffmann
      • M. Schaefer
      • L. Le Corre
      • V. Reddy
      • T. Platz
      • E. A. Cloutis
      • U. Christensen
      • T. Kneissl
      • J.-Y. Li
      • K. Mengel
      • N. Schmedemann
      • T. Schaefer
      • C. T. Russell
      • D. M. Applin
      • D. L. Buczkowski
      • M. R. M. Izawa
      • H. U. Keller
      • D. P. O’Brien
      • C. M. Pieters
      • C. A. Raymond
      • J. Ripken
      • P. M. Schenk
      • B. E. Schmidt
      • H. Sierks
      • M. V. Sykes
      • G. S. Thangjam
      • J.-B. Vincent

      The dwarf planet (1) Ceres, the largest object in the main asteroid belt, is found to have localized bright areas on its surface; particularly interesting is a bright pit on the floor of the crater Occator that exhibits what is likely to be water ice sublimation, producing crater-bound haze clouds with a diurnal rhythm.

    • Ammoniated phyllosilicates with a likely outer Solar System origin on (1) Ceres

      • M. C. De Sanctis
      • E. Ammannito
      • A. Raponi
      • S. Marchi
      • T. B. McCord
      • H. Y. McSween
      • F. Capaccioni
      • M. T. Capria
      • F. G. Carrozzo
      • M. Ciarniello
      • A. Longobardo
      • F. Tosi
      • S. Fonte
      • M. Formisano
      • A. Frigeri
      • M. Giardino
      • G. Magni
      • E. Palomba
      • D. Turrini
      • F. Zambon
      • J.-P. Combe
      • W. Feldman
      • R. Jaumann
      • L. A. McFadden
      • C. M. Pieters
      • T. Prettyman
      • M. Toplis
      • C. A. Raymond
      • C. T. Russell

      Infrared spectra of (1) Ceres acquired at distances of 82,000 to 4,300 kilometres from the surface indicate widespread ammoniated phyllosilicates; the presence of ammonia suggests that material from the outer Solar System was incorporated into Ceres.

    • Nanoscale intimacy in bifunctional catalysts for selective conversion of hydrocarbons

      • Jovana Zečević
      • Gina Vanbutsele
      • Krijn P. de Jong
      • Johan A. Martens

      The conversion of hydrocarbons to produce high-quality diesel fuel can be catalysed by bifunctional materials that contain a metal site and an acid site; it has been assumed that these sites should be as close as possible in order to enhance catalysis, but it is now shown that having them too close together can be detrimental to selectivity.

      See also
    • An observational radiative constraint on hydrologic cycle intensification

      • Anthony M. DeAngelis
      • Xin Qu
      • Mark D. Zelinka
      • Alex Hall

      The magnitude of global precipitation increase predicted by climate models has a large uncertainty that has been difficult to constrain, but much of the range in predictions is now shown to arise from shortcomings in the modelling of atmospheric absorption of shortwave radiation; if the radiative transfer algorithms controlling the absorption were more accurate, the model spread would narrow and the mean estimate could be about 40% lower.

      See also
    • Scale dependence of rock friction at high work rate

      • Futoshi Yamashita
      • Eiichi Fukuyama
      • Kazuo Mizoguchi
      • Shigeru Takizawa
      • Shiqing Xu
      • Hironori Kawakata

      In metre-sized rock specimens, rock friction starts to decrease at a much smaller work rate than in centimetre-sized rock specimens, thus demonstrating that rock friction is scale-dependent.

    • The ontogeny of fairness in seven societies

      • P. R. Blake
      • K. McAuliffe
      • J. Corbit
      • T. C. Callaghan
      • O. Barry
      • A. Bowie
      • L. Kleutsch
      • K. L. Kramer
      • E. Ross
      • H. Vongsachang
      • R. Wrangham
      • F. Warneken

      An analysis of when children develop a sense of fairness (receiving less or more than a peer) is compared across seven different societies; aversion to receiving less emerges early in childhood in all societies, whereas aversion to receiving more emerges later in childhood and only in three of the seven societies studied.

    • Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

      • Kristoffer Forslund
      • Falk Hildebrand
      • Trine Nielsen
      • Gwen Falony
      • Emmanuelle Le Chatelier
      • Shinichi Sunagawa
      • Edi Prifti
      • Sara Vieira-Silva
      • Valborg Gudmundsdottir
      • Helle Krogh Pedersen
      • Manimozhiyan Arumugam
      • Karsten Kristiansen
      • Anita Yvonne Voigt
      • Henrik Vestergaard
      • Rajna Hercog
      • Paul Igor Costea
      • Jens Roat Kultima
      • Junhua Li
      • Torben Jørgensen
      • Florence Levenez
      • Joël Dore
      • MetaHIT consortium
      • H. Bjørn Nielsen
      • Søren Brunak
      • Jeroen Raes
      • Torben Hansen
      • Jun Wang
      • S. Dusko Ehrlich
      • Peer Bork
      • Oluf Pedersen

      Growing evidence from metagenome-wide association studies link multiple common disorders to microbial dysbiosis but effects of drug treatment are often not accounted for; here, the authors re-analyse two previous metagenomic studies of type 2 diabetes mellitus patients together with a novel cohort to determine the effects of the widely prescribed antidiabetic drug metformin and highlight the need to distinguish the effects of a disease from the effects of treatment on the gut microbiota.

    • Barcoding reveals complex clonal dynamics of de novo transformed human mammary cells

      • Long V. Nguyen
      • Davide Pellacani
      • Sylvain Lefort
      • Nagarajan Kannan
      • Tomo Osako
      • Maisam Makarem
      • Claire L. Cox
      • William Kennedy
      • Philip Beer
      • Annaick Carles
      • Michelle Moksa
      • Misha Bilenky
      • Sneha Balani
      • Sonja Babovic
      • Ivan Sun
      • Miriam Rosin
      • Samuel Aparicio
      • Martin Hirst
      • Connie J. Eaves

      The first formal evidence of the shared and independent ability of basal cells and luminal pro-genitors isolated from normal human mammary tissue and transduced with a single oncogene to initiate tumorigeneses when introduced into mice.

    • FGF signalling regulates bone growth through autophagy

      • Laura Cinque
      • Alison Forrester
      • Rosa Bartolomeo
      • Maria Svelto
      • Rossella Venditti
      • Sandro Montefusco
      • Elena Polishchuk
      • Edoardo Nusco
      • Antonio Rossi
      • Diego L. Medina
      • Roman Polishchuk
      • Maria Antonietta De Matteis
      • Carmine Settembre

      During postnatal development in mice, the growth factor FGF18 induces autophagy in the chondrocyte cells of the growth plate to regulate the secretion of type II collagen, a process required for bone growth.

    • Force generation by skeletal muscle is controlled by mechanosensing in myosin filaments

      • Marco Linari
      • Elisabetta Brunello
      • Massimo Reconditi
      • Luca Fusi
      • Marco Caremani
      • Theyencheri Narayanan
      • Gabriella Piazzesi
      • Vincenzo Lombardi
      • Malcolm Irving

      It is widely accepted that contraction of skeletal muscle and the heart involves structural changes in actin-containing thin filaments to allow binding of myosin motors from neighbouring thick filaments, thus driving filament sliding; here, X-ray diffraction of single skeletal muscle cells reveals that this thin-filament mechanism can regulate muscle contraction against low load, but high-load contraction requires a second permissive step involving a structural change in the thick filament.

    • Replication stress activates DNA repair synthesis in mitosis

      • Sheroy Minocherhomji
      • Songmin Ying
      • Victoria A. Bjerregaard
      • Sara Bursomanno
      • Aiste Aleliunaite
      • Wei Wu
      • Hocine W. Mankouri
      • Huahao Shen
      • Ying Liu
      • Ian D. Hickson

      Common fragile sites (CFSs) are difficult-to-replicate regions of eukaryotic genomes that are sensitive to replication stress and that require resolution by the MUS81–EME1 endonuclease to re-initiate POLD3-dependent DNA synthesis in early mitosis; this study defines the specific pathway of events causing the CFS fragility phenotype.