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Volume 526 Issue 7571, 1 October 2015

Two papers published in this issue report on the third and final phase of The 1000 Genomes Project. Begun in 2008, the project has developed an open resource that now includes the genomic data for more than 2,500 individuals from 26 global populations, all analysed using whole-genome sequencing, deep exome sequencing and dense microarray genotyping approaches. The main report from the consortium describes key features of all 88 million genetic variants identified, while an extended analysis from the Structural Variation Analysis Group provides a more detailed account of larger and more complex variants. The data are available via http://www.1000genomes.org/data. Cover image: Cahier Archive/Corbis

Editorial

  • The unfolding Volkswagen saga highlights the need for better funding of regulatory science — and should prompt regulators to keep a closer eye on whether their rules are working.

    Editorial

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  • The latest global targets from the United Nations must be translated into realistic policies.

    Editorial
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World View

  • To maintain public support, researchers need to be able to adapt to the rapidly changing needs of society and politicians, warns Guy Poppy.

    • Guy Poppy
    World View
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Research Highlights

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Social Selection

  • A paper suggesting a Dutch grant scheme shows bias against women is criticized for a statistical flaw.

    • Chris Woolston
    Social Selection
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Seven Days

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News

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News Feature

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Comment

  • Energy-optimized hybrid computers with a range of processor accuracies will advance modelling in fields from climate change to neuroscience, says Tim Palmer.

    • Tim Palmer
    Comment
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Autumn Books

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Correspondence

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News & Views

  • The earliest stars are of huge importance to the chemical history of the cosmos, but have previously existed only in theory. There is now strong evidence that such population III stars exist in the brightest galaxy yet found in the early Universe.

    • Bethan James
    News & Views
  • Cloaking drug-loaded nanoparticles with platelet membranes enhances the drugs' abilities to target desired cells and tissues. This technology might improve treatments for cardiovascular and infectious diseases. See Letter p.118

    • Omid C. Farokhzad
    News & Views
  • Warmer temperatures have been associated with an earlier emergence of spring leaves each year. New data, however, suggest that leaf emergence is becoming less sensitive to temperature as global temperatures rise. See Letter p.104

    • Trevor F. Keenan
    News & Views
  • The identification of a regulatory site on the UBE3A protein that can be phosphorylated to alter its enzymatic activity provides insight into the aetiology of two human neurodevelopmental diseases, Angelman syndrome and autism.

    • Ype Elgersma
    News & Views
  • A transistor has been demonstrated that operates at low supply voltages by exceeding a theoretical limit. The finding opens up avenues to the development of integrated circuits that have extremely low power consumption. See Letter p.91

    • Katsuhiro Tomioka
    News & Views
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Review Article

  • The CRISPR-Cas systems of bacteria and archaea provide adaptive immunity against invading mobile genetic elements such as phages and plasmids; this Review describes the discovery of these systems and the mechanisms of immunity, including recent progress in establishing the molecular basis of host immunization.

    • Luciano A. Marraffini
    Review Article
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Article

  • Practical applications of magnesium as a lightweight structural metal are limited by its high work hardening, low ductility and fracture at very low strains; now molecular dynamics simulations reveal the origins of these problems and offer a route to design magnesium alloys with improved mechanical properties.

    • Zhaoxuan Wu
    • W. A. Curtin
    Article
  • The Structural Variation Analysis Group of The 1000 Genomes Project reports an integrated structural variation map based on discovery and genotyping of eight major structural variation classes in 2,504 unrelated individuals from across 26 populations; structural variation is compared within and between populations and its functional impact is quantified.

    • Peter H. Sudmant
    • Tobias Rausch
    • Jan O. Korbel
    Article Open Access
  • Low read depth sequencing of whole genomes and high read depth exomes of nearly 10,000 extensively phenotyped individuals are combined to help characterize novel sequence variants, generate a highly accurate imputation reference panel and identify novel alleles associated with lipid-related traits; in addition to describing population structure and providing functional annotation of rare and low-frequency variants the authors use the data to estimate the benefits of sequencing for association studies.

    • Klaudia Walter
    • Josine L. Min
    • Weihua Zhang
    Article Open Access
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Letter

  • A new type of device, the band-to-band tunnel transistor, which has atomically thin molybdenum disulfide as the active channel, operates in a fundamentally different way from a conventional silicon (MOSFET) transistor; it has turn-on characteristics and low-power operation that are better than those of state-of-the-art MOSFETs or any tunnelling transistor reported so far.

    • Deblina Sarkar
    • Xuejun Xie
    • Kaustav Banerjee
    Letter
  • A synthetic complex with a sulfur-rich coordination sphere is described that, upon reduction, breaks an Fe–S bond and binds N2, providing a model for the iron–molybdenum cofactor used by nitrogenase enzymes to produce ammonia.

    • Ilija Čorić
    • Brandon Q. Mercado
    • Patrick L. Holland
    Letter
  • Erosion and velocity data from 15 outlet glaciers covering temperate to polar glacier thermal regimes from Patagonia to the Antarctic Peninsula reveal that over the past century the basin-averaged erosion rates vary by three orders of magnitude as a function of climate across this latitudinal transect.

    • Michéle Koppes
    • Bernard Hallet
    • Katherine Boldt
    Letter
  • Spring leaf unfolding has been occurring earlier in the year because of rising temperatures; however, long-term evidence in the field from 7 European tree species studied in 1,245 sites shows that this early unfolding effect is being reduced in recent years, possibly because the reducing chilling and/or insolation render trees less responsive to warming.

    • Yongshuo H. Fu
    • Hongfang Zhao
    • Ivan A. Janssens
    Letter
  • Enamel is a tissue unique to vertebrates, and nowadays associated with teeth; here, histological material from a fossil bony fish and genomic data from an extant, armour-plated fish are analysed to show that enamel originated on the body surface and only later colonized the teeth.

    • Qingming Qu
    • Tatjana Haitina
    • Per Erik Ahlberg
    Letter
  • Human population genomic studies, including whole‐genome sequencing, were undertaken to identify determinants of bone mineral density (BMD), a major predictor of osteoporotic fractures. Non‐coding variants with large effects on BMD and fractures were identified near the EN1 locus and mouse studies confirmed this gene has an important role in skeletal biology.

    • Hou‐Feng Zheng
    • Vincenzo Forgetta
    • J. Brent Richards
    Letter
  • The authors report a new biomimetic nanodelivery platform in which polymeric nanoparticles enclosed in the plasma membrane of human platelets are used for disease-relevant targeting, and the therapeutic potential of the concept is demonstrated in animal models of coronary restenosis and systemic bacterial infection.

    • Che-Ming J. Hu
    • Ronnie H. Fang
    • Liangfang Zhang
    Letter
  • Efficient airborne transmission of influenza viruses between humans is associated with use of α2,6-linked sialic acids, not α2,3-linked sialic acids; however, using a loss-of-function approach in which a 2009 pandemic H1N1 influenza virus was engineered to bind α2,3 sialic acids, this study shows in ferrets that the soft palate is an important site for the switch of receptor usage to take place, and reveals that this tissue rapidly selects for transmissible influenza virus with human receptor preference.

    • Seema S. Lakdawala
    • Akila Jayaraman
    • Kanta Subbarao
    Letter
  • Single-cell analysis of gene expression in metastatic cells from distinct human breast tumour models shows that early metastatic cells possess basal, stem and mesenchymal cell properties, whereas advanced metastatic cells have more proliferative properties and are more mature, enabling them to be targeted with an anti-proliferative compound.

    • Devon A. Lawson
    • Nirav R. Bhakta
    • Zena Werb
    Letter
  • Bacterial cells evolved an immune system known as CRISPR–Cas to protect themselves from viral infection, triggering viruses to evolve anti-CRISPR proteins; here, three anti-CRISPR proteins are characterized, with each one interfering with the host CRISPR system at a different point.

    • Joseph Bondy-Denomy
    • Bianca Garcia
    • Alan R. Davidson
    Letter
  • The most comprehensive architectural model to date of the nuclear pore complex reveals previously unknown local interactions, and a role for nucleoporin 358 in Y-complex oligomerization.

    • Alexander von Appen
    • Jan Kosinski
    • Martin Beck
    Letter
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Corrigendum

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Toolbox

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Correction

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Toolbox

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Technology Feature

  • Working at a variety of scales and with disparate organisms and technologies, researchers are mapping how parts of the brain connect.

    • Amber Dance

    Collection:

    Technology Feature
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Feature

  • As genomics migrates to the clinic, job options are emerging for genetic counsellors to explain the meaning in mutations.

    • Michael Eisenstein
    Feature
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Q&A

  • A construction worker transitions to chemistry to carry out his love of building things.

    • Virginia Gewin
    Q&A
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Correction

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Futures

  • This is where you live.

    • Rahul Kanakia
    Futures
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Brief Communications Arising

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