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Volume 462 Issue 7270, 12 November 2009

Femtosecond stimulated Raman spectroscopy of the green fluorescent protein (GFP) chromophore reveals the molecular vibration that drives the proton transfer that lights up biologists’ favourite gene expression marker. Cover graphic: Renee Frontiera.

Authors

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Editorial

  • The ad-hoc proliferation of high-security biological labs must be controlled, and should be tied in more closely to broader research and public-health goals.

    Editorial
  • Spain should not use the recession as an excuse to stall plans to boost its scientific enterprise.

    Editorial
  • The recently launched World Health Summit offers a rare chance for dialogue.

    Editorial
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Research Highlights

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Journal Club

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News

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Correction

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News Feature

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Correspondence

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Opinion

  • To reconcile solution-driven research and blue-skies thinking, academic institutions urgently need innovative collaborations and new funding models, says Indira V. Samarasekera.

    • Indira V. Samarasekera
    Opinion
  • In China, under the threat of Western imperialism, interpretations of Darwin's ideas paved the way for Marx, Lenin and Mao, argues James Pusey in the third in our series on reactions to evolutionary theory.

    • James Pusey
    Opinion
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Books & Arts

  • Two books reveal the spirit of adventure behind the history of nuclear technology, finds William J. Nuttall.

    • William J. Nuttall
    Books & Arts
  • Having moved from engineering to art, Jean-Pierre Hébert applies mathematical rules to generate artworks that explore themes of chaos and determinism. As resident artist at the Kavli Institute for Theoretical Physics, and with an exhibition on in Los Angeles, Hébert explains his interest in algorithms.

    • Daniel Cressey
    Books & Arts
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News & Views

  • Computational methods that reliably predict the biological activities of compounds have long been sought. The validation of one such method suggests that in silico predictions for drug discovery have come of age.

    • Andrew L. Hopkins
    News & Views
  • Stars that host planets experience more mixing of their internal elements than do stars that lack such companions. This correlation may serve as a useful diagnostic in the search for planets around stars other than the Sun.

    • Marc Pinsonneault
    News & Views
  • The FOXP2 gene is implicated in the development of human speech and language. A comparison of the human and chimpanzee FOXP2 proteins highlights the differences in function in the two species.

    • Martin H. Dominguez
    • Pasko Rakic
    News & Views
  • Graphene continues to surprise physicists with its remarkable electronic properties. Experiments now show that electrons in the material can team up to behave as if they are only fragments of themselves.

    • Alberto F. Morpurgo
    News & Views
  • A tenet of drug discovery states that molecules greater than a certain size don't enter cells. But not only do certain synthetic peptides refute this idea, they also inhibit 'undruggable' biological targets.

    • Paramjit S. Arora
    • Aseem Z. Ansari
    News & Views
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Article

  • Drugs that are chemically quite similar often bind to biologically diverse protein targets, and it is unclear how selective many of these compounds are. Because many drug–target combinations exist, it would be useful to explore possible interactions computationally. Here, 3,665 drugs are tested against hundreds of targets; chemical similarities between drugs and ligand sets are found to predict thousands of unanticipated associations.

    • Michael J. Keiser
    • Vincent Setola
    • Bryan L. Roth
    Article
  • It is notoriously difficult to target transcription factors with aberrant activity in cancer. Inappropriate activation of the NOTCH complex of transcription factors is directly implicated in the pathogenesis of several disease states, including T-cell acute lymphoblastic leukaemia. The design of synthetic, cell-permeable, stabilized α-helical peptides that disrupt protein–protein interactions in NOTCH is now described.

    • Raymond E. Moellering
    • Melanie Cornejo
    • James E. Bradner
    Article
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Letter

  • Although a large range of lithium (Li) abundances is observed in solar-type stars, this range has proved theoretically difficult to understand. An earlier suggestion that Li is more depleted in stars with planets was weakened by the lack of a proper comparison sample of stars without detected planets. Here, Li abundances are reported for an unbiased sample of solar-analogue stars with and without detected planets. It is found that about 50% of the solar analogues without detected planets have on average ten times more Li that those with planets.

    • Garik Israelian
    • Elisa Delgado Mena
    • Sofia Randich
    Letter
  • The fractional quantum Hall effect (FQHE) is the quintessential collective quantum behaviour of charge carriers confined to two dimensions but it has not yet been observed in graphene, a material distinguished by the charge carriers' two-dimensional and relativistic character. Here, and in an accompanying paper, the FQHE is observed in graphene through the use of devices containing suspended graphene sheets; the results of these two papers open a door to the further elucidation of the complex physical properties of graphene.

    • Xu Du
    • Ivan Skachko
    • Eva Y. Andrei
    Letter
  • The fractional quantum Hall effect (FQHE) is the quintessential collective quantum behaviour of charge carriers confined to two dimensions but it has not yet been observed in graphene, a material distinguished by the charge carriers' two-dimensional and relativistic character. Here, and in an accompanying paper, the FQHE is observed in graphene through the use of devices containing suspended graphene sheets; the results of these two papers open a door to the further elucidation of the complex physical properties of graphene.

    • Kirill I. Bolotin
    • Fereshte Ghahari
    • Philip Kim
    Letter
  • Tracing the transient atomic motions that lie at the heart of chemical reactions requires high-resolution structural information on the timescale of molecular vibrations. Femtosecond stimulated Raman spectroscopy is now shown to provide sufficiently detailed and time-resolved vibrational spectra of the electronically excited chromophore of green fluorescent protein to reveal skeletal motions involved in the proton transfer that produces the fluorescent form of the protein.

    • Chong Fang
    • Renee R. Frontiera
    • Richard A. Mathies
    Letter
  • The study of stable oxygen isotope ratios (δ18O) of Precambrian cherts suggests that ocean temperatures during the Archaean era (about 3.5 billion years ago) were between 55 °C and 85 °C, but uncertainty about the δ18O of the primitive ocean has led to considerable debate regarding this conclusion. Here, a combined analysis of oxygen and hydrogen istopes sampled from 3.42-billion-year-old Buck Reef Chert rocks in South Africa indicates that the ancient ocean was much cooler than previously thought.

    • M. T. Hren
    • M. M. Tice
    • C. P. Chamberlain
    Letter
  • The timescale for segregation and transport of basaltic melts, which are ultimately responsible for formation of the Earth's crust, is critically dependent on the permeability of the partly molten asthenospheric mantle, yet this permeability is known mainly from semi-empirical and analogue models. A high-pressure, high-temperature centrifuge is now used to measure the rate of basalt melt flow in olivine aggregates; the resulting permeabilities are one to two orders of magnitude larger than predicted by current parameterizations.

    • James A. D. Connolly
    • Max W. Schmidt
    • Nikolai Bagdassarov
    Letter
  • The transcription factor FOXP2 is the only gene implicated in human speech, and yet it differs very little from the chimpanzee orthologue. Here, the two amino acids specific to humans are shown to alter FOXP2 function in vitro by conferring differential transcriptional regulation, and these observations are extended in vivo to human and chimpanzee brain. Together, these data identify transcriptional targets that may serve critical functions in language development.

    • Genevieve Konopka
    • Jamee M. Bomar
    • Daniel H. Geschwind
    Letter
  • The contribution of individual circuit elements to experience-dependent synaptic plasticity in the brain remains unknown. An intracellular analysis of the changes that occur when an eye is deprived of vision in early life now reveals a counterintuitive initial shift towards the occluded eye followed by a late preference for the open eye. These results, combined with intracellular pharmacology, suggest that inhibitory neurons have a major role in shaping experience-dependent plasticity in the developing visual cortex.

    • Yoko Yazaki-Sugiyama
    • Siu Kang
    • Takao K. Hensch
    Letter
  • Defects in human germ-cell (oocyte and sperm) development are the leading cause of infertility in men and women. A germ-cell reporter is now used to quantify and isolate primordial germ cells derived from both male and female human embryonic stem cells. Human DAZL is observed to function in primordial germ-cell formation, whereas the closely related genes DAZ and BOULE promote later stages of meiosis and development of gametes.

    • Kehkooi Kee
    • Vanessa T. Angeles
    • Renee A. Reijo Pera
    Letter
  • To evoke the mucosal immune system, which forms the largest part of the entire immune system, antigens on the mucosal surface must be transported across the epithelial barrier. The molecular mechanisms promoting this antigen uptake, called antigen transcytosis and mediated by specialized epithelial M cells, remain largely unknown. Here, glycoprotein 2, specifically expressed by M cells, is reported to serve as a transcytotic receptor for mucosal antigens.

    • Koji Hase
    • Kazuya Kawano
    • Hiroshi Ohno
    Letter
  • Cohesin inhibits the transcriptional machinery's interaction with and movement along chromatin, but does not prevent replication forks from duplicating the genome in S phase. Using single-molecule analysis, a replication complex is now found to affect acetylation of a subunit of cohesin, and this acetylation appears to be a central determinant of fork processivity. Loss of this regulatory mechanism leads to the spontaneous accrual of DNA damage.

    • Marie-Emilie Terret
    • Rebecca Sherwood
    • Prasad V. Jallepalli
    Letter
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Careers Q&A

  • Based at the Massachusetts Institute of Technology (MIT), Cambridge, Widnall is the winner of the Arthur M. Bueche Award for expanding opportunities for women and minorities in engineering.

    • Virginia Gewin
    Careers Q&A
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Postdoc Journal

  • Postdoc appreciation day has come and gone worldwide. Did anyone notice?

    • Julia Boughner
    Postdoc Journal
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Career Brief

  • UK undergraduate admissions rise in physics and engineering programmes.

    Career Brief
  • A new online research resources network for scientists is launched.

    Career Brief
  • Chinese government launches a website aimed at sharing science and technology resources.

    Career Brief
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Careers and Recruitment

  • Graduate students who head abroad to study face any number of challenges if they hope to prosper. Virginia Gewin provides a study guide.

    • Virginia Gewin
    Careers and Recruitment
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Addendum

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Futures

  • To any impressionable young school leavers who are considering joining the space corps.

    • Martin Hayes
    Futures
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