TABLE 1
From the following article:
Genomics of cellulosic biofuels
Edward M. Rubin
Nature 454, 841-845(14 August 2008)
doi:10.1038/nature07190
Table 1. Bioenergy genomes.
| Organism | Genome size (megabases) | Status | Reference |
|---|---|---|---|
Bioenergy-relevant organisms for which large-scale genome projects have been completed or are under way are listed. Information on genome projects without references can be found at http://www.ncbi.nlm.nih.gov/sites/entrez?db=genomeprj. | |||
| Feedstocks and feedstock models | |||
| Populus trichocarpa (poplar) | 480 | Complete | Ref. 9 |
| Chlamydomonas reinhardtii | 120 | Complete | Ref. 34 |
| Glycine max (soya bean) | 1,200 | Draft | – |
| Manihot esculenta (cassava) | 770 | In progress | – |
| Sorghum bicolor | 760 | In progress | – |
| Eucalyptus globulus | 600 | In progress | – |
| Brachypodium distachyon | 355 | In progress | – |
| Zea mays (maize) | 2,500 | In progress | – |
| Elaeis guineensis (oil palm) |  3,400 | In progress | http://www.checkbiotech.org/green_News_Biofuels.aspx?infold=15100 |
| Panicum virgatum (switchgrass) | 5,600 | In progress | – |
| Setaria italica (foxtail millet) | 515 | In progress | – |
| Biomass degraders | |||
| Acidothermus cellulolyticus 11B | 2.4 | Complete | – |
| Bacillus pumilis SAFR-032 | 3.7 | Complete | Ref. 35 |
| Caldicellulosiruptor saccharolyticus DSM 8903 | 3.0 | Complete | – |
| Clostridium phytofermentans ISDg | 4.8 | Complete | – |
| Clostridium thermocellum ATCC 27405 | 3.8 | Complete | – |
| Cytophaga hutchinsonii ATCC 33406 | 4.4 | Complete | – |
| Flavobacterium johnsoniae UW101 | 6.1 | Complete | – |
| Rubrobacter xylanophilus DSM9941 | 3.2 | Complete | – |
| Saccharophagus degradans | 5.1 | Complete | Ref. 36 |
| Thermobifida fusca strain YX | 3.6 | Complete | Ref. 37 |
| Clostridium cellulolyticum H10 | 4.0 | Draft | – |
| Elusimicrobium minutum Pei191 | 1.6 | Draft | – |
| Nectria haematococca/Fusarium solani | 51 | Draft | – |
| Phanerochaete chrysosporium | 35.1 | Draft | – |
| Postia placenta | 33 | Draft | – |
| Sagittula stellata E-37 | 5.3 | Draft | – |
| Trichoderma reesei/Hypocrea jecorina | 33 | Draft | – |
| Cellulomonas flavigena DSM 20109 | 4.0 | In progress | – |
| Cellvibrio japonicus Ueda107 | 6.0 | In progress | – |
| Fibrobacter succinogenes subsp. succinogenes S85 | 3.8 | In progress | – |
| Ruminococcus albus | 4.0 | In progress | – |
| Teredinibacter turnerae T7902 | 2 | In progress | – |
| Termite hindgut community | NA | Complete | Ref. 23 |
| Poplar biomass degrading community | NA | In progress | http://www.jgi.doe.gov/sequencing/lspssseqplans2007.html |
| Asian longhorned beetle (Anoplophora glabripennis) gut community | NA | In progress | http://www.jgi.doe.gov/sequencing/DOEmicrobes2007.html |
| Bovine rumen community transcriptome | NA | In progress | http://www.energybiosciencesinstitute.org/index.php ?option=com_content&task=view&id=159&Itemid=20 |
| Fuel producers | |||
| Clostridium acetobutylicum ATCC 824 | 4.0 | Complete | Ref. 38 |
| Clostridium beijerinckii NCIMB 8052 | 6.0 | Complete | – |
| Pichia stipitis | 15.4 | Complete | Ref. 27 |
| Thermoanaerobacter tengcongensis MB4 | 2.7 | Complete | Ref. 39 |
| Zymomonas mobilis subsp. mobilis ZM4 | 2.1 | Complete | Ref. 40 |
| Bacillus coagulans 36D1 | 2.9 | Draft | – |
| Thermoanaerobacter pseudethanolicus 39E | 2.4 | Draft | – |
| Clostridium ljungdahlii | 4.0 | In progress | – |
