
TY  - JOUR
AU  - Ludwig, J. A.
AU  - Weinstein, J. N.
TI  - Biomarkers in cancer staging, prognosis and treatment selection
JA  - Nature Rev. Cancer
PY  - 2005///
VL  - 5
SP  - 845
EP  - 856
PB  - Nature Publishing Group
M3  - 10.1038/nrc1739
N1  - 10.1038/nrc1739
UR  - http://dx.doi.org/10.1038/nrc1739
ER  -

TY  - JOUR
AU  - Cox, J.
AU  - Mann, M.
TI  - Is proteomics the new genomics?
JA  - Cell
PY  - 2007///
VL  - 130
SP  - 395
EP  - 398
PB  - Nature Publishing Group
M3  - 10.1016/j.cell.2007.07.032
N1  - 10.1016/j.cell.2007.07.032
UR  - http://dx.doi.org/10.1016/j.cell.2007.07.032
ER  -

TY  - JOUR
AU  - Faca, V.
TI  - Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes
JA  - J. Proteome Res.
PY  - 2007///
VL  - 6
SP  - 3558
EP  - 3565
PB  - Nature Publishing Group
M3  - 10.1021/pr070233q
N1  - 10.1021/pr070233q
UR  - http://dx.doi.org/10.1021/pr070233q
ER  -

TY  - JOUR
AU  - Wu, S. L.
TI  - Dynamic profiling of the post-translational modifications and interaction partners of epidermal growth factor receptor signaling after stimulation by epidermal growth factor using Extended Range Proteomic Analysis (ERPA)
JA  - Mol. Cell. Proteomics
PY  - 2006///
VL  - 5
SP  - 1610
EP  - 1627
PB  - Nature Publishing Group
M3  - 10.1074/mcp.M600105-MCP200
N1  - 10.1074/mcp.M600105-MCP200
UR  - http://dx.doi.org/10.1074/mcp.M600105-MCP200
ER  -

TY  - JOUR
AU  - Liu, T.
AU  - Belov, M. E.
AU  - Jaitly, N.
AU  - Qian, W. J.
AU  - Smith, R. D.
TI  - Accurate mass measurements in proteomics
JA  - Chem. Rev.
PY  - 2007///
VL  - 107
SP  - 3621
EP  - 3653
PB  - Nature Publishing Group
M3  - 10.1021/cr068288j
N1  - 10.1021/cr068288j
UR  - http://dx.doi.org/10.1021/cr068288j
ER  -

TY  - JOUR
AU  - Liu, X.
TI  - Mapping the human plasma proteome by SCX-LC-IMS-MS
JA  - J. Am. Soc. Mass Spectrom.
PY  - 2007///
VL  - 18
SP  - 1249
EP  - 1264
PB  - Nature Publishing Group
M3  - 10.1016/j.jasms.2007.04.012
N1  - 10.1016/j.jasms.2007.04.012
UR  - http://dx.doi.org/10.1016/j.jasms.2007.04.012
ER  -

TY  - JOUR
AU  - Stahl-Zeng, J.
AU  - Lange, V.
AU  - Ossola, R.
AU  - Aebersold, R.
AU  - Domon, B.
TI  - High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites
JA  - Mol. Cell. Proteomics
PY  - 2007///
VL  - 6
SP  - 1809
EP  - 1817
PB  - Nature Publishing Group
M3  - 10.1074/mcp.M700132-MCP200
N1  - 10.1074/mcp.M700132-MCP200
UR  - http://dx.doi.org/10.1074/mcp.M700132-MCP200
ER  -

TY  - JOUR
AU  - Kingsmore, S. F.
TI  - Multiplexed protein measurement: technologies and applications of protein and antibody arrays
JA  - Nature Rev. Drug Discov.
PY  - 2006///
VL  - 5
SP  - 310
EP  - 320
PB  - Nature Publishing Group
M3  - 10.1038/nrd2006
N1  - 10.1038/nrd2006
UR  - http://dx.doi.org/10.1038/nrd2006
ER  -

TY  - JOUR
AU  - Chignard, N.
TI  - Cleavage of endoplasmic reticulum proteins in hepatocellular carcinoma: detection of generated fragments in patient sera
JA  - Gastroenterology
PY  - 2006///
VL  - 130
SP  - 2010
EP  - 2022
PB  - Nature Publishing Group
M3  - 10.1053/j.gastro.2006.02.058
N1  - 10.1053/j.gastro.2006.02.058
UR  - http://dx.doi.org/10.1053/j.gastro.2006.02.058
ER  -

TY  - JOUR
AU  - Hu, S.
AU  - Loo, J. A.
AU  - Wong, D. T.
TI  - Human body fluid proteome analysis
JA  - Proteomics
PY  - 2006///
VL  - 6
SP  - 6326
EP  - 6353
PB  - Nature Publishing Group
M3  - 10.1002/pmic.200600284
N1  - 10.1002/pmic.200600284
UR  - http://dx.doi.org/10.1002/pmic.200600284
ER  -

TY  - JOUR
AU  - Kim, S. W.
TI  - Proteomics-based identification of proteins secreted in apical surface fluid of squamous metaplastic human tracheobronchial epithelial cells cultured by three-dimensional organotypic air-liquid interface method
JA  - Cancer Res.
PY  - 2007///
VL  - 67
SP  - 6565
EP  - 6573
PB  - Nature Publishing Group
M3  - 10.1158/0008-5472.CAN-06-2783
N1  - 10.1158/0008-5472.CAN-06-2783
UR  - http://dx.doi.org/10.1158/0008-5472.CAN-06-2783
ER  -

TY  - JOUR
AU  - Kulasingam, V.
AU  - Diamandis, E. P.
TI  - Proteomic analysis of conditioned media from three breast cancer cell lines: a mine for biomarkers and therapeutic targets
JA  - Mol. Cell. Proteomics
PY  - 2007///
VL  - 6
SP  - 1997
EP  - 2011
PB  - Nature Publishing Group
M3  - 10.1074/mcp.M600465-MCP200
N1  - 10.1074/mcp.M600465-MCP200
UR  - http://dx.doi.org/10.1074/mcp.M600465-MCP200
ER  -

TY  - JOUR
AU  - States, D. J.
TI  - Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study
JA  - Nature Biotechnol.
PY  - 2006///
VL  - 24
SP  - 333
EP  - 338
PB  - Nature Publishing Group
M3  - 10.1038/nbt1183
N1  - 10.1038/nbt1183
UR  - http://dx.doi.org/10.1038/nbt1183
ER  -

TY  - JOUR
AU  - Zhang, H.
TI  - Mass spectrometric detection of tissue proteins in plasma
JA  - Mol. Cell. Proteomics
PY  - 2007///
VL  - 6
SP  - 64
EP  - 71
PB  - Nature Publishing Group
M3  - 10.1074/mcp.M600160-MCP200
N1  - 10.1074/mcp.M600160-MCP200
UR  - http://dx.doi.org/10.1074/mcp.M600160-MCP200
ER  -

TY  - JOUR
AU  - Ransohoff, D. F.
TI  - Bias as a threat to the validity of cancer molecular-marker research
JA  - Nature Rev. Cancer
PY  - 2005///
VL  - 5
SP  - 142
EP  - 149
PB  - Nature Publishing Group
M3  - 10.1038/nrc1550
N1  - 10.1038/nrc1550
UR  - http://dx.doi.org/10.1038/nrc1550
ER  -

TY  - JOUR
AU  - Gao, W.
TI  - Distinctive serum protein profiles involving abundant proteins in lung cancer patients based upon antibody microarray analysis
JA  - BMC Cancer
PY  - 2005///
VL  - 5
SP  - 110
PB  - Nature Publishing Group
M3  - 10.1186/1471-2407-5-110
N1  - 10.1186/1471-2407-5-110
UR  - http://dx.doi.org/10.1186/1471-2407-5-110
ER  -

TY  - JOUR
AU  - Okano, T.
TI  - Proteomic signature corresponding to the response to gefitinib (Iressa, ZD1839), an epidermal growth factor receptor tyrosine kinase inhibitor in lung adenocarcinoma
JA  - Clin. Cancer Res.
PY  - 2007///
VL  - 13
SP  - 799
EP  - 805
PB  - Nature Publishing Group
M3  - 10.1158/1078-0432.CCR-06-1654
N1  - 10.1158/1078-0432.CCR-06-1654
UR  - http://dx.doi.org/10.1158/1078-0432.CCR-06-1654
ER  -

TY  - JOUR
AU  - Taguchi, F.
TI  - Mass spectrometry to classify non-small-cell lung cancer patients for clinical outcome after treatment with epidermal growth factor receptor tyrosine kinase inhibitors: a multicohort cross-institutional study
JA  - J. Natl Cancer Inst.
PY  - 2007///
VL  - 99
SP  - 838
EP  - 846
PB  - Nature Publishing Group
M3  - 10.1093/jnci/djk195
N1  - 10.1093/jnci/djk195
UR  - http://dx.doi.org/10.1093/jnci/djk195
ER  -

TY  - JOUR
AU  - Villanueva, J.
TI  - Serum peptidome patterns that distinguish metastatic thyroid carcinoma from cancer-free controls are unbiased by gender and age
JA  - Mol. Cell. Proteomics
PY  - 2006///
VL  - 5
SP  - 1840
EP  - 1852
PB  - Nature Publishing Group
M3  - 10.1074/mcp.M600229-MCP200
N1  - 10.1074/mcp.M600229-MCP200
UR  - http://dx.doi.org/10.1074/mcp.M600229-MCP200
ER  -

TY  - JOUR
AU  - Kirmiz, C.
TI  - A serum glycomics approach to breast cancer biomarkers
JA  - Mol. Cell. Proteomics
PY  - 2007///
VL  - 6
SP  - 43
EP  - 55
PB  - Nature Publishing Group
ER  -

TY  - JOUR
AU  - Kyselova, Z.
TI  - Alterations in the serum glycome due to metastatic prostate cancer
JA  - J. Proteome Res.
PY  - 2007///
VL  - 6
SP  - 1822
EP  - 1832
PB  - Nature Publishing Group
ER  -

TY  - JOUR
AU  - Barrabes, S.
TI  - Glycosylation of serum ribonuclease 1 indicates a major endothelial origin and reveals an increase in core fucosylation in pancreatic cancer
JA  - Glycobiology
PY  - 2007///
VL  - 17
SP  - 388
EP  - 400
PB  - Nature Publishing Group
M3  - 10.1093/glycob/cwm002
N1  - 10.1093/glycob/cwm002
UR  - http://dx.doi.org/10.1093/glycob/cwm002
ER  -

TY  - JOUR
AU  - Zhao, J.
AU  - Qiu, W.
AU  - Simeone, D. M.
AU  - Lubman, D. M.
TI  - N-linked glycosylation profiling of pancreatic cancer serum using capillary liquid phase separation coupled with mass spectrometric analysis
JA  - J. Proteome Res.
PY  - 2007///
VL  - 6
SP  - 1126
EP  - 1138
PB  - Nature Publishing Group
M3  - 10.1021/pr0604458
N1  - 10.1021/pr0604458
UR  - http://dx.doi.org/10.1021/pr0604458
ER  -

TY  - JOUR
AU  - Syka, J. E.
AU  - Coon, J. J.
AU  - Schroeder, M. J.
AU  - Shabanowitz, J.
AU  - Hunt, D. F.
TI  - Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
JA  - Proc. Natl Acad. Sci. USA
PY  - 2004///
VL  - 101
SP  - 9528
EP  - 9533
PB  - Nature Publishing Group
M3  - 10.1073/pnas.0402700101
N1  - 10.1073/pnas.0402700101
UR  - http://dx.doi.org/10.1073/pnas.0402700101
ER  -

TY  - JOUR
AU  - Chatterjee, M.
TI  - Diagnostic markers of ovarian cancer by high-throughput antigen cloning and detection on arrays
JA  - Cancer Res.
PY  - 2006///
VL  - 66
SP  - 1181
EP  - 1190
PB  - Nature Publishing Group
M3  - 10.1158/0008-5472.CAN-04-2962
N1  - 10.1158/0008-5472.CAN-04-2962
UR  - http://dx.doi.org/10.1158/0008-5472.CAN-04-2962
ER  -

TY  - JOUR
AU  - Wang, X.
TI  - Autoantibody signatures in prostate cancer
JA  - N. Engl. J. Med.
PY  - 2005///
VL  - 353
SP  - 1224
EP  - 1135
PB  - Nature Publishing Group
M3  - 10.1056/NEJMoa051931
N1  - 10.1056/NEJMoa051931
UR  - http://dx.doi.org/10.1056/NEJMoa051931
ER  -

TY  - JOUR
AU  - Hudson, M. E.
AU  - Pozdnyakova, I.
AU  - Haines, K.
AU  - Mor, G.
AU  - Snyder, M.
TI  - Identification of differentially expressed proteins in ovarian cancer using high-density protein microarrays
JA  - Proc. Natl Acad. Sci. USA
PY  - 2007///
VL  - 104
SP  - 17494
EP  - 17499
PB  - Nature Publishing Group
M3  - 10.1073/pnas.0708572104
N1  - 10.1073/pnas.0708572104
UR  - http://dx.doi.org/10.1073/pnas.0708572104
ER  -

TY  - JOUR
AU  - Philip, R.
TI  - Shared immunoproteome for ovarian cancer diagnostics and immunotherapy: potential theranostic approach to cancer
JA  - J. Proteome Res.
PY  - 2007///
VL  - 6
SP  - 2509
EP  - 2517
PB  - Nature Publishing Group
M3  - 10.1021/pr0606777
N1  - 10.1021/pr0606777
UR  - http://dx.doi.org/10.1021/pr0606777
ER  -

TY  - JOUR
AU  - Brichory, F. M.
TI  - An immune response manifested by the common occurrence of annexins I and II autoantibodies and high circulating levels of IL-6 in lung cancer
JA  - Proc. Natl Acad. Sci. USA
PY  - 2001///
VL  - 98
SP  - 9824
EP  - 9829
PB  - Nature Publishing Group
M3  - 10.1073/pnas.171320598
N1  - 10.1073/pnas.171320598
UR  - http://dx.doi.org/10.1073/pnas.171320598
ER  -

TY  - JOUR
AU  - Pereira-Faca, S.
TI  - Identification of 14-3-3[thgr] as an antigen that induces a humoral response in lung cancer
JA  - Cancer Res.
PY  - 2007///
VL  - 67
SP  - 12000
EP  - 12006
PB  - Nature Publishing Group
M3  - 10.1158/0008-5472.CAN-07-2913
N1  - 10.1158/0008-5472.CAN-07-2913
UR  - http://dx.doi.org/10.1158/0008-5472.CAN-07-2913
ER  -

TY  - JOUR
AU  - Madoz-Gurpide, J.
AU  - Kuick, R.
AU  - Wang, H.
AU  - Misek, D. E.
AU  - Hanash, S. M.
TI  - Integral protein microarrays for the identification of lung cancer antigens in sera that induce a humoral immune response
JA  - Mol. Cell. Proteomics
PY  - 2008///
VL  - 7
SP  - 268
EP  - 281
PB  - Nature Publishing Group
ER  -

TY  - JOUR
AU  - Yasui, Y.
TI  - A data-analytic strategy for protein biomarker discovery: profiling of high-dimensional proteomic data for cancer detection
JA  - Biostatistics
PY  - 2003///
VL  - 4
SP  - 449
EP  - 463
PB  - Nature Publishing Group
M3  - 10.1093/biostatistics/4.3.449
N1  - 10.1093/biostatistics/4.3.449
UR  - http://dx.doi.org/10.1093/biostatistics/4.3.449
ER  -

TY  - JOUR
AU  - Tada, H.
AU  - Higuchi, H.
AU  - Wanatabe, T. M.
AU  - Ohuchi, N.
TI  - In vivo real-time tracking of single quantum dots conjugated with monoclonal anti-HER2 antibody in tumors of mice
JA  - Cancer Res.
PY  - 2007///
VL  - 67
SP  - 1138
EP  - 1144
PB  - Nature Publishing Group
M3  - 10.1158/0008-5472.CAN-06-1185
N1  - 10.1158/0008-5472.CAN-06-1185
UR  - http://dx.doi.org/10.1158/0008-5472.CAN-06-1185
ER  -

TY  - JOUR
AU  - Gao, X.
AU  - Cui, Y.
AU  - Levenson, R. M.
AU  - Chung, L. W.
AU  - Nie, S.
TI  - In vivo cancer targeting and imaging with semiconductor quantum dots
JA  - Nature Biotechnol.
PY  - 2004///
VL  - 22
SP  - 969
EP  - 976
PB  - Nature Publishing Group
M3  - 10.1038/nbt994
N1  - 10.1038/nbt994
UR  - http://dx.doi.org/10.1038/nbt994
ER  -

TY  - JOUR
AU  - Shafer, M. W.
AU  - Mangold, L.
AU  - Partin, A. W.
AU  - Haab, B. B.
TI  - Antibody array profiling reveals serum TSP-1 as a marker to distinguish benign from malignant prostatic disease
JA  - Prostate
PY  - 2007///
VL  - 67
SP  - 255
EP  - 267
PB  - Nature Publishing Group
M3  - 10.1002/pros.20514
N1  - 10.1002/pros.20514
UR  - http://dx.doi.org/10.1002/pros.20514
ER  -

TY  - JOUR
AU  - Fredriksson, S.
TI  - Protein detection using proximity-dependent DNA ligation assays
JA  - Nature Biotechnol.
PY  - 2002///
VL  - 20
SP  - 473
EP  - 477
PB  - Nature Publishing Group
M3  - 10.1038/nbt0502-473
N1  - 10.1038/nbt0502-473
UR  - http://dx.doi.org/10.1038/nbt0502-473
ER  -

TY  - JOUR
AU  - Kato, K.
AU  - Ishimuro, T.
AU  - Arima, Y.
AU  - Hirata, I.
AU  - Iwata, H.
TI  - High-throughput immunophenotyping by surface plasmon resonance imaging
JA  - Anal. Chem.
PY  - 2007///
VL  - 79
SP  - 8616
EP  - 8923
PB  - Nature Publishing Group
M3  - 10.1021/ac071548s
N1  - 10.1021/ac071548s
UR  - http://dx.doi.org/10.1021/ac071548s
ER  -

TY  - JOUR
AU  - Burg, T. P.
TI  - Weighing of biomolecules, single cells and single nanoparticles in fluid
JA  - Nature
PY  - 2007///
VL  - 446
SP  - 1066
EP  - 1069
PB  - Nature Publishing Group
M3  - 10.1038/nature05741
N1  - 10.1038/nature05741
UR  - http://dx.doi.org/10.1038/nature05741
ER  -

TY  - JOUR
AU  - Kuhn, E.
TI  - Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards
JA  - Proteomics
PY  - 2004///
VL  - 4
SP  - 1175
EP  - 1186
PB  - Nature Publishing Group
M3  - 10.1002/pmic.200300670
N1  - 10.1002/pmic.200300670
UR  - http://dx.doi.org/10.1002/pmic.200300670
ER  -

TY  - JOUR
AU  - Hoppe-Seyler, F.
AU  - Butz, K.
TI  - Peptide aptamers: powerful new tools for molecular medicine
JA  - J. Mol. Med.
PY  - 2000///
VL  - 78
SP  - 426
EP  - 430
PB  - Nature Publishing Group
M3  - 10.1007/s001090000140
N1  - 10.1007/s001090000140
UR  - http://dx.doi.org/10.1007/s001090000140
ER  -

TY  - JOUR
AU  - Cerchia, L.
AU  - Hamm, J.
AU  - Libri, D.
AU  - Tavitian, B.
AU  - de Franciscis, V.
TI  - Nucleic acid aptamers in cancer medicine
JA  - FEBS Lett.
PY  - 2002///
VL  - 528
SP  - 12
EP  - 16
PB  - Nature Publishing Group
M3  - 10.1016/S0014-5793(02)03275-1
N1  - 10.1016/S0014-5793(02)03275-1
UR  - http://dx.doi.org/10.1016/S0014-5793(02)03275-1
ER  -

TY  - JOUR
AU  - Maser, R. S.
TI  - Chromosomally unstable mouse tumours have genomic alterations similar to diverse human cancers
JA  - Nature
PY  - 2007///
VL  - 447
SP  - 966
EP  - 971
PB  - Nature Publishing Group
M3  - 10.1038/nature05886
N1  - 10.1038/nature05886
UR  - http://dx.doi.org/10.1038/nature05886
ER  -

TY  - JOUR
AU  - Lu, H.
AU  - Knutson, K. L.
AU  - Gad, E.
AU  - Disis, M. L.
TI  - The tumor antigen repertoire identified in tumor-bearing Neu transgenic mice predicts human tumor antigens
JA  - Cancer Res.
PY  - 2006///
VL  - 66
SP  - 9754
EP  - 9761
PB  - Nature Publishing Group
M3  - 10.1158/0008-5472.CAN-06-1083
N1  - 10.1158/0008-5472.CAN-06-1083
UR  - http://dx.doi.org/10.1158/0008-5472.CAN-06-1083
ER  -

TY  - JOUR
AU  - Chen, R.
TI  - Pancreatic cancer proteome: the proteins that underlie invasion, metastasis, and immunologic escape
JA  - Gastroenterology
PY  - 2006///
VL  - 129
SP  - 1187
EP  - 1197
PB  - Nature Publishing Group
M3  - 10.1053/j.gastro.2005.08.001
N1  - 10.1053/j.gastro.2005.08.001
UR  - http://dx.doi.org/10.1053/j.gastro.2005.08.001
ER  -

TY  - JOUR
AU  - Chen, R.
TI  - Quantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer
JA  - Mol. Cell. Proteomics
PY  - 2007///
VL  - 6
SP  - 1331
EP  - 1342
PB  - Nature Publishing Group
M3  - 10.1074/mcp.M700072-MCP200
N1  - 10.1074/mcp.M700072-MCP200
UR  - http://dx.doi.org/10.1074/mcp.M700072-MCP200
ER  -

TY  - JOUR
AU  - Chen, R.
TI  - Comparison of pancreas juice proteins from cancer versus pancreatitis using quantitative proteomic analysis
JA  - Pancreas
PY  - 2007///
VL  - 34
SP  - 70
EP  - 79
PB  - Nature Publishing Group
M3  - 10.1097/01.mpa.0000240615.20474.fd
N1  - 10.1097/01.mpa.0000240615.20474.fd
UR  - http://dx.doi.org/10.1097/01.mpa.0000240615.20474.fd
ER  -

TY  - JOUR
AU  - Lin, Y.
TI  - Proteins associated with disease and clinical course in pancreas cancer: a proteomic analysis of plasma in surgical patients
JA  - J. Proteome Res.
PY  - 2006///
VL  - 5
SP  - 2169
EP  - 2176
PB  - Nature Publishing Group
M3  - 10.1021/pr0600374
N1  - 10.1021/pr0600374
UR  - http://dx.doi.org/10.1021/pr0600374
ER  -

TY  - JOUR
AU  - Yu, K. H.
AU  - Rustgi, A. K.
AU  - Blair, I. A.
TI  - Characterization of proteins in human pancreatic cancer serum using differential gel electrophoresis and tandem mass spectrometry
JA  - J. Proteome Res.
PY  - 2005///
VL  - 4
SP  - 1742
EP  - 1751
PB  - Nature Publishing Group
M3  - 10.1021/pr050174l
N1  - 10.1021/pr050174l
UR  - http://dx.doi.org/10.1021/pr050174l
ER  -

TY  - JOUR
AU  - Wang, Y.
AU  - Wu, S. L.
AU  - Hancock, W. S.
TI  - Approaches to the study of N-linked glycoproteins in human plasma using lectin affinity chromatography and nano-HPLC coupled to electrospray linear ion trap-Fourier transform mass spectrometry (LTQ/FTMS)
JA  - Glycobiology
PY  - 2006///
VL  - 6
SP  - 514
EP  - 523
PB  - Nature Publishing Group
M3  - 10.1093/glycob/cwj091
N1  - 10.1093/glycob/cwj091
UR  - http://dx.doi.org/10.1093/glycob/cwj091
ER  -
