Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Article
  • Published:

Legionella pneumophila proteins that regulate Rab1 membrane cycling

Abstract

Rab1 is a GTPase that regulates the transport of endoplasmic-reticulum-derived vesicles in eukaryotic cells. The intracellular pathogen Legionella pneumophila subverts Rab1 function to create a vacuole that supports bacterial replication by a mechanism that is not well understood. Here we describe L. pneumophila proteins that control Rab1 activity directly. We show that a region in the DrrA (defect in Rab1 recruitment A) protein required for recruitment of Rab1 to membranes functions as a guanine nucleotide dissociation inhibitor displacement factor. A second region of the DrrA protein stimulated Rab1 activation by functioning as a guanine nucleotide exchange factor. The LepB protein was found to inactivate Rab1 by stimulating GTP hydrolysis, indicating that LepB has GTPase-activating protein activity that regulates removal of Rab proteins from membranes. Thus, L. pneumophila encodes proteins that regulate three distinct biochemical reactions critical for Rab GTPase membrane cycling to redirect Rab1 to the pathogen-occupied vacuole and to control Rab1 function.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Figure 1: DrrA has GDF activity that is required for activation of Rab1 bound to Rab GDI.
Figure 2: LepB interacts with GTP-bound Rab1 and is detected on the early LCV.
Figure 3: LepB interacts with Rab1–GTP and disrupts secretory transport in mammalian cells.
Figure 4: LepB is a Rab1-specific GAP.

Similar content being viewed by others

References

  1. Zerial, M. & McBride, H. Rab proteins as membrane organizers. Nature Rev. Mol. Cell Biol. 2, 107–117 (2001)

    Article  CAS  Google Scholar 

  2. Rink, J., Ghigo, E., Kalaidzidis, Y. & Zerial, M. Rab conversion as a mechanism of progression from early to late endosomes. Cell 122, 735–749 (2005)

    Article  CAS  Google Scholar 

  3. Sasaki, T. et al. Purification and characterization from bovine brain cytosol of a protein that inhibits the dissociation of GDP from and the subsequent binding of GTP to smg p25A, a ras p21-like GTP-binding protein. J. Biol. Chem. 265, 2333–2337 (1990)

    Article  CAS  Google Scholar 

  4. Araki, S., Kikuchi, A., Hata, Y., Isomura, M. & Takai, Y. Regulation of reversible binding of smg p25A, a ras p21-like GTP-binding protein, to synaptic plasma membranes and vesicles by its specific regulatory protein, GDP dissociation inhibitor. J. Biol. Chem. 265, 13007–13015 (1990)

    Article  CAS  Google Scholar 

  5. Ullrich, O. et al. Rab GDP dissociation inhibitor as a general regulator for the membrane association of rab proteins. J. Biol. Chem. 268, 18143–18150 (1993)

    Article  CAS  Google Scholar 

  6. Dirac-Svejstrup, A. B., Sumizawa, T. & Pfeffer, S. R. Identification of a GDI displacement factor that releases endosomal Rab GTPases from Rab-GDI. EMBO J. 16, 465–472 (1997)

    Article  CAS  Google Scholar 

  7. Markgraf, D. F., Peplowska, K. & Ungermann, C. Rab cascades and tethering factors in the endomembrane system. FEBS Lett. 581, 2125–2130 (2007)

    Article  CAS  Google Scholar 

  8. Grosshans, B. L., Ortiz, D. & Novick, P. Rabs and their effectors: achieving specificity in membrane traffic. Proc. Natl Acad. Sci. USA 103, 11821–11827 (2006)

    Article  ADS  CAS  Google Scholar 

  9. Strom, M., Vollmer, P., Tan, T. J. & Gallwitz, D. A yeast GTPase-activating protein that interacts specifically with a member of the Ypt/Rab family. Nature 361, 736–739 (1993)

    Article  ADS  CAS  Google Scholar 

  10. Albert, S., Will, E. & Gallwitz, D. Identification of the catalytic domains and their functionally critical arginine residues of two yeast GTPase-activating proteins specific for Ypt/Rab transport GTPases. EMBO J. 18, 5216–5225 (1999)

    Article  CAS  Google Scholar 

  11. Horwitz, M. A. Formation of a novel phagosome by the Legionnaires’ disease bacterium (Legionella pneumophila) in human monocytes. J. Exp. Med. 158, 1319–1331 (1983)

    Article  CAS  Google Scholar 

  12. Swanson, M. S. & Isberg, R. R. Association of Legionella pneumophila with the macrophage endoplasmic reticulum. Infect. Immun. 63, 3609–3620 (1995)

    Article  CAS  Google Scholar 

  13. Kagan, J. C. & Roy, C. R. Legionella phagosomes intercept vesicular traffic from endoplasmic reticulum exit sites. Nature Cell Biol. 4, 945–954 (2002)

    Article  CAS  Google Scholar 

  14. Kagan, J. C., Stein, M. P., Pypaert, M. & Roy, C. R. Legionella subvert the functions of Rab1 and Sec22b to create a replicative organelle. J. Exp. Med. 199, 1201–1211 (2004)

    Article  CAS  Google Scholar 

  15. Derre, I. & Isberg, R. R. Legionella pneumophila replication vacuole formation involves rapid recruitment of proteins of the early secretory system. Infect. Immun. 72, 3048–3053 (2004)

    Article  CAS  Google Scholar 

  16. Segal, G., Purcell, M. & Shuman, H. A. Host cell killing and bacterial conjugation require overlapping sets of genes within a 22-kb region of the Legionella pneumophila genome. Proc. Natl Acad. Sci. USA 95, 1669–1674 (1998)

    Article  ADS  CAS  Google Scholar 

  17. Vogel, J. P., Andrews, H. L., Wong, S. K. & Isberg, R. R. Conjugative transfer by the virulence system of Legionella pneumophila . Science 279, 873–876 (1998)

    Article  ADS  CAS  Google Scholar 

  18. Nagai, H., Kagan, J. C., Zhu, X., Kahn, R. A. & Roy, C. R. A bacterial guanine nucleotide exchange factor activates ARF on Legionella phagosomes. Science 295, 679–682 (2002)

    Article  ADS  CAS  Google Scholar 

  19. Murata, T. et al. The Legionella pneumophila effector protein DrrA is a Rab1 guanine nucleotide-exchange factor. Nature Cell Biol. 8, 971–977 (2006)

    Article  CAS  Google Scholar 

  20. Machner, M. P. & Isberg, R. R. Targeting of host Rab GTPase function by the intravacuolar pathogen Legionella pneumophila . Dev. Cell 11, 47–56 (2006)

    Article  CAS  Google Scholar 

  21. Sivars, U., Aivazian, D. & Pfeffer, S. R. Yip3 catalyses the dissociation of endosomal Rab-GDI complexes. Nature 425, 856–859 (2003)

    Article  ADS  CAS  Google Scholar 

  22. Stroupe, C. & Brunger, A. T. Crystal structures of a Rab protein in its inactive and active conformations. J. Mol. Biol. 304, 585–598 (2000)

    Article  CAS  Google Scholar 

  23. Pylypenko, O. et al. Structure of doubly prenylated Ypt1:GDI complex and the mechanism of GDI-mediated Rab recycling. EMBO J. 25, 13–23 (2006)

    Article  CAS  Google Scholar 

  24. Chen, J. et al. Legionella effectors that promote nonlytic release from protozoa. Science 303, 1358–1361 (2004)

    Article  ADS  CAS  Google Scholar 

  25. Pan, X., Eathiraj, S., Munson, M. & Lambright, D. G. TBC-domain GAPs for Rab GTPases accelerate GTP hydrolysis by a dual-finger mechanism. Nature 442, 303–306 (2006)

    Article  ADS  CAS  Google Scholar 

  26. Geng, J., Shin, M. E., Gilbert, P. M., Collins, R. N. & Burd, C. G. Saccharomyces cerevisiae Rab-GDI displacement factor ortholog Yip3p forms distinct complexes with the Ypt1 Rab GTPase and the reticulon Rtn1p. Eukaryot. Cell 4, 1166–1174 (2005)

    Article  CAS  Google Scholar 

  27. Robinson, C. G. & Roy, C. R. Attachment and fusion of endoplasmic reticulum with vacuoles containing Legionella pneumophila . Cell. Microbiol. 8, 793–805 (2006)

    Article  CAS  Google Scholar 

  28. Satoh, A., Wang, Y., Malsam, J., Beard, M. B. & Warren, G. Golgin-84 is a rab1 binding partner involved in Golgi structure. Traffic 4, 153–161 (2003)

    Article  CAS  Google Scholar 

  29. Christoforidis, S. & Zerial, M. Purification and identification of novel Rab effectors using affinity chromatography. Methods 20, 403–410 (2000)

    Article  CAS  Google Scholar 

  30. Amor, J. C. et al. The structure of RalF, an ADP-ribosylation factor guanine nucleotide exchange factor from Legionella pneumophila, reveals the presence of a cap over the active site. J. Biol. Chem. 280, 1392–1400 (2005)

    Article  CAS  Google Scholar 

  31. Kagan, J. C., Murata, T. & Roy, C. R. Analysis of Rab1 recruitment to vacuoles containing Legionella pneumophila . Methods Enzymol. 403, 71–81 (2005)

    Article  CAS  Google Scholar 

  32. Celada, A., Gray, P. W., Rinderknecht, E. & Schreiber, R. D. Evidence for a gamma-interferon receptor that regulates macrophage tumoricidal activity. J. Exp. Med. 160, 55–74 (1984)

    Article  CAS  Google Scholar 

  33. Merriam, J. J., Mathur, R., Maxfield-Boumil, R. & Isberg, R. R. Analysis of the Legionella pneumophila fliI gene: intracellular growth of a defined mutant defective for flagellum biosynthesis. Infect. Immun. 65, 2497–2501 (1997)

    Article  CAS  Google Scholar 

  34. Campodonico, E. M., Chesnel, L. & Roy, C. R. A yeast genetic system for the identification and characterization of substrate proteins transferred into host cells by the Legionella pneumophila Dot/Icm system. Mol. Microbiol. 56, 918–933 (2005)

    Article  CAS  Google Scholar 

Download references

Acknowledgements

We thank G. Warren for his advice on the Rab1 binding studies, and M. P. Stein and L. Chesnel for technical suggestions and advice. This work was supported by the NIH (C.R.R. and D.G.L.) and an NSF Graduate Research Fellowship (A.I.).

Author Contributions C.R.R. supervised the project. A.I. conducted all of the experiments in this study with the exception of the GEF assays, which were conducted by A.D. D.G.L. assisted with the GAP assays. All authors contributed to the writing of the manuscript

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Craig R. Roy.

Ethics declarations

Competing interests

The authors declare no competing financial interests.

Supplementary information

Supplementary Information

The file contains Supplementary Figures S1-S3 with Legends. (PDF 383 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ingmundson, A., Delprato, A., Lambright, D. et al. Legionella pneumophila proteins that regulate Rab1 membrane cycling. Nature 450, 365–369 (2007). https://doi.org/10.1038/nature06336

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/nature06336

This article is cited by

Comments

By submitting a comment you agree to abide by our Terms and Community Guidelines. If you find something abusive or that does not comply with our terms or guidelines please flag it as inappropriate.

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing