Supplementary information
From the following article:
Natural history and evolutionary principles of gene duplication in fungi
Ilan Wapinski, Avi Pfeffer, Nir Friedman & Aviv Regev
Nature 449, 54-61(6 September 2007)
doi:10.1038/nature06107
Supplementary Information
This file contains Supplementary Figures 1-12 and Legends and Supplementary Notes 1-5. The notes contain: quality of genomic data sources; summary of bootstrap method; accuracy measures as compared to curated resources and simulated data; summary of selected essential S. cerevisiae genes not present in all species; and discussion of coherence in gene duplication and loss
Supplementary Table 1
This file contains Supplementary Table 1 which summarizes the significant enrichments of all orthogroup classes tested (different categories are on separate tabs).
Supplementary Table 2
This file contains Supplementary Table 2 which includes a list of each S. cerevisiae gene's transcription module membership.
Supplementary Table 3
This file contains Supplementary Table 3 which summarizes the enrichments of all gene classes tested for the transcription modules (different categories are on separate tabs).
Supplementary Table 4
This file contains Supplementary Table 4 which lists the extended copy number variation profile coherences in each orthogroup class tested (different categories are on separate tabs).
Supplementary Table 5
This file contains Supplementary Table 5 which summarizes the gene class migrations and protein interaction network statistics for each pair of paralogous S. cerevisiae genes.
Supplementary Table 6
This file contains Supplementary Table 6 which lists the GEO accession numbers and references for the gene expression assays included in all our analyses.
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