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Nature 447, 655-660 (7 June 2007) | doi:10.1038/447655a; Published online 6 June 2007

Replicating genotype–phenotype associations

Stephen J. Chanock1,2, Teri Manolio3, Michael Boehnke4, Eric Boerwinkle5, David J. Hunter6, Gilles Thomas1, Joel N. Hirschhorn7, Goncalo Abecasis4, David Altshuler8, Joan E. Bailey-Wilson3, Lisa D. Brooks3, Lon R. Cardon9, Mark Daly8, Peter Donnelly10, Joseph F. Fraumeni, Jr1, Nelson B. Freimer11, Daniela S. Gerhard12, Chris Gunter13, Alan E. Guttmacher3, Mark S. Guyer3, Emily L. Harris3, Josephine Hoh14, Robert Hoover1, C. Augustine Kong15, Kathleen R. Merikangas16, Cynthia C. Morton17, Lyle J. Palmer18, Elizabeth G. Phimister19, John P. Rice20, Jerry Roberts3, Charles Rotimi21, Margaret A. Tucker1, Kyle J. Vogan22, Sholom Wacholder1, Ellen M. Wijsman23, Deborah M. Winn24 & Francis S. Collins3 for NCI-NHGRI Working Group on Replication in Association Studies

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What constitutes replication of a genotype–phenotype association, and how best can it be achieved?

The study of human genetics has recently undergone a dramatic transition with the completion of both the sequencing of the human genome and the mapping of human haplotypes of the most common form of genetic variation, the single nucleotide polymorphism (SNP)1, 2, 3. In concert with this rapid expansion of detailed genomic information, cost-effective genotyping technologies have been developed that can assay hundreds of thousands of SNPs simultaneously.

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