Supplementary information

From the following article:

Global variation in copy number in the human genome

Richard Redon, Shumpei Ishikawa, Karen R. Fitch, Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun Kyung Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. González, Mònica Gratacòs, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer and Matthew E. Hurles

Nature 444, 444-454(23 November 2006)

doi:10.1038/nature05329

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Supplementary Figures

This file contains Supplementary Figures 1–17.

Supplementary Tables

This file contains Supplementary Tables 1–8 and 11–21

Supplementary Table 9

Sample CNVs from WGTP

Supplementary Table 10

Sample CNVs from 500K EA

Supplementary Methods

This file describes the detailed methods for array hybridizations, summaries of CNV calling algorithms used in the study, experimental validation, and statistical methods. Includes references.

Supplementary Notes 1

LTA analysis. This file describes the detailed methods used for loss of transmitted allele (LTA) analysis, which was used to identify potential cell line artifacts in the HapMap samples by looking for tracks of Mendelian inconsistent SNP genotypes. Additional data not included in the main text is also provided. Includes 5 figures, 3 tables, and references

Supplementary Notes 2

1q21 duplication/ deletion disorder. This file describes a new duplication/ deletion disorder on chromosome 1 and the implications for medical disease studies. Includes Supplementary Figure 12 and references.

Supplementary Notes 3

All references included in the Supplementary Material.

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