Provider: Nature Publishing Group Content: application/x-research-info-systems TY - JOUR AU - Bejerano, G. TI - Ultraconserved elements in the human genome JA - Science PY - 2004/// VL - 304 SP - 1321 EP - 1325 M3 - 10.1126/science.1098119 N1 - 10.1126/science.1098119 UR - http://dx.doi.org/10.1126/science.1098119 ER - TY - JOUR AU - Roeder, R. G. AU - Rutter, W. J. TI - Multiple forms of DNA-dependent RNA polymerase in eukaryotic organisms JA - Nature PY - 1969/// VL - 224 SP - 234 EP - 237 M3 - 10.1038/224234a0 N1 - 10.1038/224234a0 UR - http://dx.doi.org/10.1038/224234a0 ER - TY - GEN AU - Goldberg, M. L. TI - Sequence Analysis of Drosophila Histone Genes. Ph.D. thesis, Stanford Univ PY - 1979/// ER - TY - JOUR AU - Stathopoulos, A. AU - Levine, M. TI - Genomic regulatory networks and animal development JA - Dev. Cell PY - 2005/// VL - 9 SP - 449 EP - 462 M3 - 10.1016/j.devcel.2005.09.005 N1 - 10.1016/j.devcel.2005.09.005 UR - http://dx.doi.org/10.1016/j.devcel.2005.09.005 ER - TY - JOUR AU - Levine, M. AU - Tjian, R. TI - Transcription regulation and animal diversity JA - Nature PY - 2003/// VL - 424 SP - 147 EP - 151 M3 - 10.1038/nature01763 N1 - 10.1038/nature01763 UR - http://dx.doi.org/10.1038/nature01763 ER - TY - JOUR AU - Emison, E. S. TI - A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk JA - Nature PY - 2005/// VL - 434 SP - 857 EP - 863 M3 - 10.1038/nature03467 N1 - 10.1038/nature03467 UR - http://dx.doi.org/10.1038/nature03467 ER - TY - JOUR AU - Kleinjan, D. A. AU - van Heyningen, V. TI - Long-range control of gene expression: emerging mechanisms and disruption in disease JA - Am. J. Hum. Genet. PY - 2005/// VL - 76 SP - 8 EP - 32 M3 - 10.1086/426833 N1 - 10.1086/426833 UR - http://dx.doi.org/10.1086/426833 ER - TY - JOUR AU - Lettice, L. A. TI - A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly JA - Hum. Mol. Genet. PY - 2003/// VL - 12 SP - 1725 EP - 1735 M3 - 10.1093/hmg/ddg180 N1 - 10.1093/hmg/ddg180 UR - http://dx.doi.org/10.1093/hmg/ddg180 ER - TY - JOUR AU - Boffelli, D. TI - Phylogenetic shadowing of primate sequences to find functional regions of the human genome JA - Science PY - 2003/// VL - 299 SP - 1391 EP - 1394 M3 - 10.1126/science.1081331 N1 - 10.1126/science.1081331 UR - http://dx.doi.org/10.1126/science.1081331 ER - TY - JOUR AU - Nobrega, M. A. AU - Ovcharenko, I. AU - Afzal, V. AU - Rubin, E. M. TI - Scanning human gene deserts for long-range enhancers JA - Science PY - 2003/// VL - 302 SP - 413 M3 - 10.1126/science.1088328 N1 - 10.1126/science.1088328 UR - http://dx.doi.org/10.1126/science.1088328 ER - TY - JOUR AU - Prabhakar, S. TI - Close sequence comparisons are sufficient to identify human cis-regulatory elements JA - Genome Res. PY - 2006/// VL - 16 SP - 855 EP - 863 M3 - 10.1101/gr.4717506 N1 - 10.1101/gr.4717506 UR - http://dx.doi.org/10.1101/gr.4717506 ER - TY - JOUR AU - Woolfe, A. TI - Highly conserved non-coding sequences are associated with vertebrate development JA - PLoS Biol. PY - 2005/// VL - 3 SP - e7 M3 - 10.1371/journal.pbio.0030007 N1 - 10.1371/journal.pbio.0030007 UR - http://dx.doi.org/10.1371/journal.pbio.0030007 ER - TY - JOUR AU - Kothary, R. TI - Inducible expression of an hsp68-lacZ hybrid gene in transgenic mice JA - Development PY - 1989/// VL - 105 SP - 707 EP - 714 ER - TY - JOUR AU - Rojas, A. TI - Gata4 expression in lateral mesoderm is downstream of BMP4 and is activated directly by Forkhead and GATA transcription factors through a distal enhancer element JA - Development PY - 2005/// VL - 132 SP - 3405 EP - 3417 M3 - 10.1242/dev.01913 N1 - 10.1242/dev.01913 UR - http://dx.doi.org/10.1242/dev.01913 ER - TY - JOUR AU - Rossant, J. AU - Zirngibl, R. AU - Cado, D. AU - Shago, M. AU - Giguere, V. TI - Expression of a retinoic acid response element-hsplacZ transgene defines specific domains of transcriptional activity during mouse embryogenesis JA - Genes Dev. PY - 1991/// VL - 5 SP - 1333 EP - 1344 ER - TY - JOUR AU - Yamagishi, H. TI - Tbx1 is regulated by tissue-specific forkhead proteins through a common Sonic hedgehog-responsive enhancer JA - Genes Dev. PY - 2003/// VL - 17 SP - 269 EP - 281 M3 - 10.1101/gad.1048903 N1 - 10.1101/gad.1048903 UR - http://dx.doi.org/10.1101/gad.1048903 ER - TY - JOUR AU - Boffelli, D. AU - Nobrega, M. A. AU - Rubin, E. M. TI - Comparative genomics at the vertebrate extremes JA - Nature Rev. Genet. PY - 2004/// VL - 5 SP - 456 EP - 465 M3 - 10.1038/nrg1350 N1 - 10.1038/nrg1350 UR - http://dx.doi.org/10.1038/nrg1350 ER - TY - JOUR AU - Ahituv, N. AU - Prabhakar, S. AU - Poulin, F. AU - Rubin, E. M. AU - Couronne, O. TI - Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny JA - Hum. Mol. Genet. PY - 2005/// VL - 14 SP - 3057 EP - 3063 M3 - 10.1093/hmg/ddi338 N1 - 10.1093/hmg/ddi338 UR - http://dx.doi.org/10.1093/hmg/ddi338 ER - TY - JOUR AU - Kohlhase, J. AU - Wischermann, A. AU - Reichenbach, H. AU - Froster, U. AU - Engel, W. TI - Mutations in the SALL1 putative transcription factor gene cause Townes-Brocks syndrome JA - Nature Genet. PY - 1998/// VL - 18 SP - 81 EP - 83 M3 - 10.1038/ng0198-81 N1 - 10.1038/ng0198-81 UR - http://dx.doi.org/10.1038/ng0198-81 ER - TY - JOUR AU - Buck, A. AU - Kispert, A. AU - Kohlhase, J. TI - Embryonic expression of the murine homologue of SALL1, the gene mutated in Townes–Brocks syndrome JA - Mech. Dev. PY - 2001/// VL - 104 SP - 143 EP - 146 M3 - 10.1016/S0925-4773(01)00364-1 N1 - 10.1016/S0925-4773(01)00364-1 UR - http://dx.doi.org/10.1016/S0925-4773(01)00364-1 ER - TY - JOUR AU - Carroll, S. B. TI - Evolution at two levels: on genes and form JA - PLoS Biol. PY - 2005/// VL - 3 SP - e245 M3 - 10.1371/journal.pbio.0030245 N1 - 10.1371/journal.pbio.0030245 UR - http://dx.doi.org/10.1371/journal.pbio.0030245 ER - TY - GEN AU - Davidson, E. H. TI - Genomic Regulatory Systems: In Development and Evolution PY - 2001/// ER - TY - JOUR AU - Lee, T. I. TI - Control of developmental regulators by Polycomb in human embryonic stem cells JA - Cell PY - 2006/// VL - 125 SP - 301 EP - 313 M3 - 10.1016/j.cell.2006.02.043 N1 - 10.1016/j.cell.2006.02.043 UR - http://dx.doi.org/10.1016/j.cell.2006.02.043 ER - TY - JOUR AU - Bard, J. L. TI - An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature JA - Mech. Dev. PY - 1998/// VL - 74 SP - 111 EP - 120 M3 - 10.1016/S0925-4773(98)00069-0 N1 - 10.1016/S0925-4773(98)00069-0 UR - http://dx.doi.org/10.1016/S0925-4773(98)00069-0 ER - TY - JOUR AU - Gray, P. A. TI - Mouse brain organization revealed through direct genome-scale TF expression analysis JA - Science PY - 2004/// VL - 306 SP - 2255 EP - 2257 M3 - 10.1126/science.1104935 N1 - 10.1126/science.1104935 UR - http://dx.doi.org/10.1126/science.1104935 ER - TY - JOUR AU - Poulin, F. TI - In vivo characterization of a vertebrate ultraconserved enhancer JA - Genomics PY - 2005/// VL - 85 SP - 774 EP - 781 M3 - 10.1016/j.ygeno.2005.03.003 N1 - 10.1016/j.ygeno.2005.03.003 UR - http://dx.doi.org/10.1016/j.ygeno.2005.03.003 ER - TY - JOUR AU - van Helden, J. AU - Andre, B. AU - Collado-Vides, J. TI - Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies JA - J. Mol. Biol. PY - 1998/// VL - 281 SP - 827 EP - 842 M3 - 10.1006/jmbi.1998.1947 N1 - 10.1006/jmbi.1998.1947 UR - http://dx.doi.org/10.1006/jmbi.1998.1947 ER - TY - JOUR AU - Kurokawa, D. TI - Regulation of Otx2 expression and its functions in mouse forebrain and midbrain JA - Development PY - 2004/// VL - 131 SP - 3319 EP - 3331 M3 - 10.1242/dev.01220 N1 - 10.1242/dev.01220 UR - http://dx.doi.org/10.1242/dev.01220 ER - TY - JOUR AU - Zhou, J. AU - Zwicker, J. AU - Szymanski, P. AU - Levine, M. AU - Tjian, R. TI - TAFII mutations disrupt Dorsal activation in the Drosophila embryo JA - Proc. Natl Acad. Sci. USA PY - 1998/// VL - 95 SP - 13483 EP - 13488 M3 - 10.1073/pnas.95.23.13483 N1 - 10.1073/pnas.95.23.13483 UR - http://dx.doi.org/10.1073/pnas.95.23.13483 ER -