TABLE 1
From the following article:
Insights into social insects from the genome of the honeybee Apis mellifera
The Honeybee Genome Sequencing Consortium
Nature 443, 931-949(26 October 2006)
doi:10.1038/nature05260
Table 1. Genome assembly statistics.
| Version | Reads (million) | Bases (Mb) | N50 contigs (kb)* | N50 scaffolds (kb)* | Total contigs (Mb) | Span contigs (Mb) | Coverage by reads (%) | Genome size (Mb)† | Coverage‡ | Mapped (oriented) (Mb) | Mapped (not oriented) (Mb) | Unmapped (Mb) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. | ||||||||||||
Genome size = | ||||||||||||
Coverage = bases/genome size. | ||||||||||||
Data are available at http://www.hgsc.bcm.tmc.edu/projects/honeybee. | ||||||||||||
| 1.0 | 2.0 | 1,251 | 22 | 236 | 176 | 182 | >96 | ~212 | ~6 | 81 (38%) | 32 (15%) | 99 (47%) |
| 1.1 | 2.0 | 1,251 | 19 | 223 | 198 | 206 | >96 | 210 | 6.0 | 81 (39%) | 29 (14%) | 100 (47%) |
| 1.2 | 2.0 | 1,374 | 23 | 260 | 208 | 213 | >96 | 219 | 6.3 | 101 (47%) | 29 (14%) | 79 (39%) |
| 2.0 | 2.7 | 1,776 | 36 | 343 | 225 | 229 | >96 | 237 | 7.5 | 132 (58%) | 28 (12%) | 77 (30%) |
| 3.0 | 2.7 | 1,776 | 41 | 362 | 231 | 235 | >96 | 238 | 7.5 | 138 (59%) | 28 (12%) | 72 (29%) |
| 4.0 | 2.7 | 1,776 | 41 | 362 | 231 | 235 | >96 | 236 | 7.5 | 152 (65%) | 34 (14%) | 49 (21%) |
(contig lengths)/(completeness).