Supplementary information
From the following article:
Dissecting self-renewal in stem cells with RNA interference
Natalia Ivanova, Radu Dobrin, Rong Lu, Iulia Kotenko, John Levorse, Christina DeCoste, Xenia Schafer, Yi Lun and Ihor R. Lemischka
Nature 442, 533-538(3 August 2006)
doi:10.1038/nature04915
Supplementary Notes
This file contains Supplementary Materials, Supplementary Tables 1–4, Supplementary Figures 1–18 and additional references.
Supplementary Data 1
MAS5.0 normalized microarray data
Supplementary Data 2
MIAME description of microarray data
Supplementary Data 3
Description of microarray files
Supplementary Data 4
Non-redundant probes used in microarray analysis
Supplementary Data 5
Probes affected at least in one shRNA time-course
Supplementary Data 6
901 probes down-regulated in RA differentiation time-course
Supplementary Data 7
Information for genes used in the over-expression studies
Supplementary Data 8
List of genes affected by Nanog shRNA
Supplementary Data 9
List of genes affected by Oct4 shRNA
Supplementary Data 10
List of genes affected by Sox2 shRNA
Supplementary Data 11
List of genes affected by Esrrb shRNA
Supplementary Data 12
List of genes affected by Tbx3 shRNA
Supplementary Data 13
List of genes affected by Tcl1 shRNA
Supplementary Data 14
List of genes affected by Mm.343880 shRNA
Supplementary Data 15
List of genes affected by Dppa4 shRNA
Supplementary Data 16
List of genes down-regulated during the Dppa4 shRNA time-course only.
Supplementary Data 17
List of genes down-regulated during the Mm.343880 shRNA time-course only.
Supplementary Data 18
List of genes up-regulated during the Mm.343880 shRNA time-course only.
Supplementary Data 19
List of genes down-regulated during the Nanog and Oct4 shRNA time-courses only.
Supplementary Data 20
List of genes down-regulated during the Nanog shRNA time-course only.
Supplementary Data 21
List of genes up-regulated during the Nanog shRNA time-course only.
Supplementary Data 22
List of genes down-regulated during the Oct4 shRNA time-course only.
Supplementary Data 23
List of genes up-regulated during the Oct4 shRNA time-course only.
Supplementary Data 24
List of genes up-regulated during the Oct4 and Sox2 shRNA time-courses only.
Supplementary Data 25
List of genes down-regulated in Pattern1
Supplementary Data 26
List of genes up-regulated in Pattern1
Supplementary Data 27
List of genes down-regulated in Pattern2
Supplementary Data 28
List of genes up-regulated in Pattern2
Supplementary Data 29
List of genes down-regulated in Pattern3
Supplementary Data 30
List of genes up-regulated in Pattern3
Supplementary Data 31
List of genes down-regulated during the Sox2 shRNA time-course only
Supplementary Data 32
List of genes up-regulated during the Sox2 shRNA time-course only
Supplementary Data 33
List of genes down-regulated during the Tbx3 shRNA time-course only
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