Supplementary information
From the following article:
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
Marc Strous, Eric Pelletier, Sophie Mangenot, Thomas Rattei, Angelika Lehner, Michael W. Taylor, Matthias Horn, Holger Daims, Delphine Bartol-Mavel, Patrick Wincker, Valérie Barbe, Nuria Fonknechten, David Vallenet, Béatrice Segurens, Chantal Schenowitz-Truong, Claudine Médigue, Astrid Collingro, Berend Snel, Bas E. Dutilh, Huub J. M. Op den Camp, Chris van der Drift, Irina Cirpus, Katinka T. van de Pas-Schoonen, Harry R. Harhangi, Laura van Niftrik, Markus Schmid, Jan Keltjens, Jack van de Vossenberg, Boran Kartal, Harald Meier, Dmitrij Frishman, Martijn A. Huynen, Hans-Werner Mewes, Jean Weissenbach, Mike S. M. Jetten, Michael Wagner and Denis Le Paslier
Nature 440, 790-794 (6 April 2006)
doi:10.1038/nature04647
Supplementary Figure legends
Supplementary Methods
Supplementary Figure 1
Maximum-likelihood tree displaying the16S rRNA gene diversity in the anammox enrichment culture from which the K. stuttgartiensis genome was reconstructed.
Supplementary Figure 2
Representation of the K. stuttgartiensis chromosome including annotated coding sequences and RNA genes.
Supplementary Figure 3
Functional redundancy in catabolism and respiration in K. stuttgartiensis compared to other bacteria.
Supplementary Figure 4
Phylogenetic consensus tree based on concatenated 5S-16S-23S rRNA sequences, showing the phylogenetic positioning of K. stuttgartiensis within the Bacteria.
Supplementary Figure 5
Distance (FITCH with the Dayhoff-PAM model), maximum parsimony (MP) and maximum likelihood (PHYML with the Dayhoff-PAM model) phylogenetic trees based on 26 concatenated ribosomal protein sequences (see Supplementary Methods), showing the phylogenetic positioning of K. stuttgartiensis within the Bacteria.
Supplementary Table 1
General features of the Kuenenia stuttgartiensis genome and comparison with Rhodopirellula baltica.
Supplementary Table 2
Genes with known homologues involved in respiration.
Supplementary Table 3
Iron and manganese respiration by the anammox bacterium Kuenenia stuttgartiensis.
Supplementary Table 4
Genes with known homologues involved in carbon metabolism.
Supplementary Table 5
CO2 fixation pathway in Kuenenia stuttgartiensis.
Supplementary Table 6
Proteins (gene names) used for phylogenetic analysis.
Supplementary Table 7
List of orthologous groups (OG) in which both Chlamydiae and Planctomycetes are heavily represented, to the exclusion of most other sequenced bacteria.
Supplementary Table 8
Genes with homologues involved in peptidoglycan biosynthesis and cell division.
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