FIGURE 1. Phylogenetic tree and representative dot plot.
From the following article:
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
James E. Galagan, Sarah E. Calvo, Christina Cuomo, Li-Jun Ma, Jennifer R. Wortman, Serafim Batzoglou, Su-In Lee, Meray Ba
türkmen, Christina C. Spevak, John Clutterbuck, Vladimir Kapitonov, Jerzy Jurka, Claudio Scazzocchio, Mark Farman, Jonathan Butler, Seth Purcell, Steve Harris, Gerhard H. Braus, Oliver Draht, Silke Busch, Christophe D'Enfert, Christiane Bouchier, Gustavo H. Goldman, Deborah Bell-Pedersen, Sam Griffiths-Jones, John H. Doonan, Jaehyuk Yu, Kay Vienken, Arnab Pain, Michael Freitag, Eric U. Selker, David B. Archer, Miguel Á. Peñalva, Berl R. Oakley, Michelle Momany, Toshihiro Tanaka, Toshitaka Kumagai, Kiyoshi Asai, Masayuki Machida, William C. Nierman, David W. Denning, Mark Caddick, Michael Hynes, Mathieu Paoletti, Reinhard Fischer, Bruce Miller, Paul Dyer, Matthew S. Sachs, Stephen A. Osmani
and Bruce W. Birren
Nature 438, 1105-1115 (22 December 2005)
doi:10.1038/nature04341
a, Phylogenetic tree showing the relationship between three Aspergillus species compared using N. crassa and F. graminearum as an outgroup. Branch lengths correspond to substitutions per site calculated using a maximum likelihood approach. An identical topology was predicted using C. immitis as an outgroup. b, Dot plot of A. nidulans (horizontal) and A. fumigatus (vertical) genomes. Axes represent the concatenation of all chromosomes for the corresponding genome. Gridlines indicate the boundaries between chromosomes and axis labels indicate chromosome number. Elements in the dot plot represent protein homology translated to genomic coordinates.