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Nature 437, 831-837 (6 October 2005) | doi:10.1038/nature04002; Received 7 April 2005; Accepted 4 July 2005

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Structure of the CED-4–CED-9 complex provides insights into programmed cell death in Caenorhabditis elegans

Nieng Yan1, Jijie Chai1, Eui Seung Lee2,3, Lichuan Gu1, Qun Liu4, Jiaqing He5, Jia-Wei Wu1, David Kokel2, Huilin Li5, Quan Hao4, Ding Xue2 & Yigong Shi1

  1. Department of Molecular Biology, Princeton University, Lewis Thomas Laboratory, Washington Road, Princeton, New Jersey 08544, USA
  2. Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado 80309, USA
  3. Department of Life Science, Gwangju Institute of Science and Technology, Gwangju 500-712, Republic of Korea
  4. Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA
  5. Biology Department, Brookhaven National Laboratory, Upton, New York 11973, USA

Correspondence to: Yigong Shi1 Correspondence and requests for materials should be addressed to Y.S. (Email: yshi@molbio.princeton.edu).

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Interplay among four genes—egl-1, ced-9, ced-4 and ced-3—controls the onset of programmed cell death in the nematode Caenorhabditis elegans. Activation of the cell-killing protease CED-3 requires CED-4. However, CED-4 is constitutively inhibited by CED-9 until its release by EGL-1. Here we report the crystal structure of the CED-4–CED-9 complex at 2.6 Å resolution, and a complete reconstitution of the CED-3 activation pathway using homogeneous proteins of CED-4, CED-9 and EGL-1. One molecule of CED-9 binds to an asymmetric dimer of CED-4, but specifically recognizes only one of the two CED-4 molecules. This specific interaction prevents CED-4 from activating CED-3. EGL-1 binding induces pronounced conformational changes in CED-9 that result in the dissociation of the CED-4 dimer from CED-9. The released CED-4 dimer further dimerizes to form a tetramer, which facilitates the autoactivation of CED-3. Together, our studies provide important insights into the regulation of cell death activation in C. elegans.

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